mRNA_Ecto-sp13_S_contig15721.4221.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15721.4221.1
Unique NamemRNA_Ecto-sp13_S_contig15721.4221.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15721.4221.1 vs. uniprot
Match: D7G0X0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X0_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 9.170e-37
Identity = 112/139 (80.58%), Postives = 114/139 (82.01%), Query Frame = -1 
Query:  638 STGLGNALQHDVPSPPRHNSERSSPSFDALSGTPAAGEVNGPSGSGPSSAAHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFAPTAXXXGEVSKTSLAPHENGAGGDMVRGEGREDRDAADGEEGEGRKRLRLGELN 1054
            STGLGNALQHDVPSPPRHN ERSSPSFDALSGTPAAGEV+GPSGS        XXXXXXXXXXXX          XXXXXXXEFAPT XXX EVSKTSLAPHENGAGGDMVRGEGREDR+AA GE  E RKRLRLGELN
Sbjct:  792 STGLGNALQHDVPSPPRHNPERSSPSFDALSGTPAAGEVDGPSGS-----XXXXXXXXXXXXXXXSIGGRQPPQQXXXXXXXEFAPTXXXXXEVSKTSLAPHENGAGGDMVRGEGREDRNAAGGEGEEARKRLRLGELN 925
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BLAST of mRNA_Ecto-sp13_S_contig15721.4221.1 vs. uniprot
Match: A0A6H5KHX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX5_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.450e-34
Identity = 105/145 (72.41%), Postives = 107/145 (73.79%), Query Frame = -1 
Query:  638 STGLGNALQHDVPSPPRHNSERSSPSFDALSGTPAAGEVNGPSGSGPSSAAHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------EFAPTAXXXGEVSKTSLAPHENGAGGDMVRGEGREDRDAADGEEGEGRKRLRLGELN 1054
            STGLGNALQHDVPSP +HN ERSSPSFDALSGTPAAGEV+GPSGS        XXXXXXXXXXX                XX      EFAPTAXXX EVSKTSLAPHE GAGGDMVRGEGREDRDAA GE  E RKRLRLGELN
Sbjct: 1091 STGLGNALQHDVPSPSQHNPERSSPSFDALSGTPAAGEVDGPSGSXXXXXXXXXXXXXXXXXXXMNSRGSGSIGGRQPPQXXXXXXXXEFAPTAXXXXEVSKTSLAPHEIGAGGDMVRGEGREDRDAAGGEAEEARKRLRLGELN 1235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15721.4221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0X0_ECTSI9.170e-3780.58EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KHX5_9PHAE2.450e-3472.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15721contigEcto-sp13_S_contig15721:987..2040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1054
Hectar predicted targeting categoryother localisation
Exons1
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.5309796-UTR-Ecto-sp13_S_contig15721:986..15121681462831.5309796-UTR-Ecto-sp13_S_contig15721:986..1512Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15721 987..1512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.5395625-CDS-Ecto-sp13_S_contig15721:1512..20401681462831.5395625-CDS-Ecto-sp13_S_contig15721:1512..2040Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15721 1513..2040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15721.4221.1prot_Ecto-sp13_S_contig15721.4221.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15721 1513..2040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15721.4221.1

>prot_Ecto-sp13_S_contig15721.4221.1 ID=prot_Ecto-sp13_S_contig15721.4221.1|Name=mRNA_Ecto-sp13_S_contig15721.4221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
MCIVAKTTSDETKRQNKAEPGSAPRPKEELSHHGSNLVQLSEPQPFPPLP
LLSVSGVPVFPSLAPHHVPAGAVLVGRQRGLADLSAAAGGRSELSAPASA
PLLGWLAAADAAAPTRVHAAAAAFVRGRAGAGAGGPVDFARRRGPRQGVK
RRRRSLRVVSGGGRHVVLKRVAETG*
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mRNA from alignment at Ecto-sp13_S_contig15721:987..2040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15721.4221.1 ID=mRNA_Ecto-sp13_S_contig15721.4221.1|Name=mRNA_Ecto-sp13_S_contig15721.4221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1054bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15721:987..2040+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGATAACGGTGGCAACAGCAGCATTTTTTCCGCCGTCGAAGGAAGCAT
GGTACAAGCACGATGGGGGGGGCAAAAATCGGAGGCGGTTCAACGACGGA
AAACACTCCGTGCCTCGTCACAGCAGCGGAGGGTAAAAGGACCAGAACAT
CAGGCCATCTGACAAAAGAACGGAGGCTCTCAAAATAATACACAACTGTC
TGCTTCTCAAATCTCCACCCCCGACCAGCCGGCCGGACCCTACCGCTCGC
CTCCAGAAATAGAGTTGTTACGACGGACATGTCAGCCCTCTCTCCACGTC
GACACGGGAGGGGGATGGGCGGGCTCGGCTTCAGGCACGCTCGAGTAGTC
CCGCCAACAAACCCTTGTGGGCAAGGTGGCGGTGCTCGAAACGGTAGGAC
AAGGGCTCTCTCTCGCTCGTTCGCTCCTCCCACCCACGCCCACGCACGTG
CGCGCGGGCGAGTCAACACACGTGGCCCAAAAAACCCATCCGTGCGAGAG
CGAGCGAGAGGGCCTCTCACGCCTCCATGTGCATCGTTGCGAAGACGACT
TCCGATGAAACAAAGCGGCAAAACAAGGCTGAACCCGGGTCCGCGCCCCG
ACCCAAGGAAGAGCTATCCCACCACGGTAGCAACTTAGTTCAGCTCTCCG
AGCCTCAGCCGTTTCCTCCCCTCCCCCTCCTCTCCGTCAGCGGCGTCCCG
GTCTTCCCGTCCCTCGCCCCGCACCATGTCCCCGCCGGCGCCGTTCTCGT
GGGGCGCCAGCGAGGTCTTGCTGACCTCTCCGCCGCCGCCGGCGGTCGGA
GCGAACTCTCCGCCCCCGCCTCCGCTCCCCTGCTGGGGTGGCTGGCGGCC
GCCGATGCTGCCGCTCCCACGCGAGTTCATGCCGCCGCCGCCGCCTTCGT
GCGCGGCAGAGCTGGGGCCGGAGCCGGAGGGCCCGTTGACTTCGCCCGCC
GCAGGGGTCCCCGACAGGGCGTCAAACGACGGAGACGATCGCTCCGAGTT
GTGTCGGGGGGGGGAAGGCACGTCGTGCTGAAGCGCGTTGCCGAGACCGG
TTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15721:987..2040+

>mRNA_Ecto-sp13_S_contig15721.4221.1 ID=mRNA_Ecto-sp13_S_contig15721.4221.1|Name=mRNA_Ecto-sp13_S_contig15721.4221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15721:987..2040+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCATCGTTGCGAAGACGACTTCCGATGAAACAAAGCGGCAAAACAA
GGCTGAACCCGGGTCCGCGCCCCGACCCAAGGAAGAGCTATCCCACCACG
GTAGCAACTTAGTTCAGCTCTCCGAGCCTCAGCCGTTTCCTCCCCTCCCC
CTCCTCTCCGTCAGCGGCGTCCCGGTCTTCCCGTCCCTCGCCCCGCACCA
TGTCCCCGCCGGCGCCGTTCTCGTGGGGCGCCAGCGAGGTCTTGCTGACC
TCTCCGCCGCCGCCGGCGGTCGGAGCGAACTCTCCGCCCCCGCCTCCGCT
CCCCTGCTGGGGTGGCTGGCGGCCGCCGATGCTGCCGCTCCCACGCGAGT
TCATGCCGCCGCCGCCGCCTTCGTGCGCGGCAGAGCTGGGGCCGGAGCCG
GAGGGCCCGTTGACTTCGCCCGCCGCAGGGGTCCCCGACAGGGCGTCAAA
CGACGGAGACGATCGCTCCGAGTTGTGTCGGGGGGGGGAAGGCACGTCGT
GCTGAAGCGCGTTGCCGAGACCGGTTGA
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