mRNA_Ecto-sp13_S_contig15720.4220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: D8LHH2_ECTSI (CPLD51 protein required for cyt b6 assembly n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH2_ECTSI) HSP 1 Score: 124 bits (310), Expect = 5.670e-33 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1
Query: 7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE
Sbjct: 244 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 303
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A835YMB8_9STRA (CPLD51 protein required for cyt b6 assembly n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.320e-22 Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1
Query: 7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
GVYYW N R DKAQVRLET+DDDT EI IT EELDR++KTMGY +KGMIRVKG+LE
Sbjct: 217 GVYYWNNAQRKDKAQVRLETTDDDTTVEIRITAGEEELDRMAKTMGYQQKGMIRVKGILE 276
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A7R9UFF5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFF5_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 5.190e-15 Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
GVYYWQN S + AQVRLETSDD T+I + EELDR T+GY +KGM+ VK + +
Sbjct: 62 GVYYWQNASIENSAQVRLETSDDGMTTDIVVRAEKEELDRFQDTLGYSQKGMVYVKSIFD 121
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A7S1VVB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVB4_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 6.150e-14 Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
GVYYW+ G R D +V+L +DDDT EI + G+ EEL+R+ +T+G+ EKGMI+V+G+L+
Sbjct: 199 GVYYWKAGDRVDDCEVKLTANDDDTENEIAVQGSEEELERMWRTLGWQEKGMIKVEGVLD 258
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: B7GC58_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC58_PHATC) HSP 1 Score: 72.4 bits (176), Expect = 6.470e-14 Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
G+YYWQ+G R D V+L T++++T EI + G+ EEL+R+ +T+G+ EKGM+RV GLL+
Sbjct: 170 GIYYWQSGDRVDDCSVKLVTNEEETENEITVQGSEEELERMWRTLGWQEKGMVRVDGLLD 229
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A7S3CSG8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CSG8_9SPIT) HSP 1 Score: 68.6 bits (166), Expect = 1.960e-13 Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
G YY + G R ++ +V++ TSDDD+ +I + G EELDRLSK +G MEKG + VKGLLE
Sbjct: 52 GAYYLERGERVEQVKVKMVTSDDDSEVDITVQGDPEELDRLSKELGLMEKGKVYVKGLLE 111
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A0D2MFH2_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MFH2_9CHLO) HSP 1 Score: 68.9 bits (167), Expect = 4.800e-13 Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 10 VYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
VYY+Q G R ++ +V++ TSDDD T+I + G EE+ RLSK +G +EKGM+ VKG+LE
Sbjct: 115 VYYFQRGERAEEVRVKMVTSDDDLTTDIIVEGDQEEIARLSKELGLVEKGMVYVKGILE 173
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: D8RQ05_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RQ05_SELML) HSP 1 Score: 69.3 bits (168), Expect = 5.080e-13 Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
G YYW N SR ++ QV+L +DD++ T++ + G E++++L K +G+MEKGM+ VKG+L+
Sbjct: 137 GAYYWTNASRKEEIQVKLVVADDESSTDVLVQGDDEQIEQLRKELGFMEKGMVYVKGILQ 196
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A7S1GP37_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GP37_CYCTE) HSP 1 Score: 68.9 bits (167), Expect = 5.280e-13 Identity = 26/60 (43.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
G+YYW++G R D +V+L T++++T EI + G+ EE++R+ +T+G+ EKGM++V G+ E
Sbjct: 120 GIYYWKSGDRVDDCEVKLSTNEEETENEILVQGSDEEIERMWRTLGWAEKGMVKVAGIFE 179
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A2V0P2I6_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P2I6_9CHLO) HSP 1 Score: 66.2 bits (160), Expect = 6.430e-12 Identity = 28/59 (47.46%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 10 VYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
VYY+Q G R ++ +V++ T+DDD T+I + G EE+ R++K +G +EKGM+ VKG+LE
Sbjct: 126 VYYYQKGERAEEVRVKMVTADDDMTTDIVVEGDQEEIARMAKELGLVEKGMVYVKGILE 184 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15720.4220.1 >prot_Ecto-sp13_S_contig15720.4220.1 ID=prot_Ecto-sp13_S_contig15720.4220.1|Name=mRNA_Ecto-sp13_S_contig15720.4220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp CRGVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMback to top mRNA from alignment at Ecto-sp13_S_contig15720:2241..2920- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15720.4220.1 ID=mRNA_Ecto-sp13_S_contig15720.4220.1|Name=mRNA_Ecto-sp13_S_contig15720.4220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=680bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15720:2241..2920- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15720:2241..2920- >mRNA_Ecto-sp13_S_contig15720.4220.1 ID=mRNA_Ecto-sp13_S_contig15720.4220.1|Name=mRNA_Ecto-sp13_S_contig15720.4220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15720:2241..2920- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |