mRNA_Ecto-sp13_S_contig15720.4220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15720.4220.1
Unique NamemRNA_Ecto-sp13_S_contig15720.4220.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: D8LHH2_ECTSI (CPLD51 protein required for cyt b6 assembly n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH2_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 5.670e-33
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1
Query:    7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE
Sbjct:  244 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 303          
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A835YMB8_9STRA (CPLD51 protein required for cyt b6 assembly n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.320e-22
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            GVYYW N  R DKAQVRLET+DDDT  EI IT   EELDR++KTMGY +KGMIRVKG+LE
Sbjct:  217 GVYYWNNAQRKDKAQVRLETTDDDTTVEIRITAGEEELDRMAKTMGYQQKGMIRVKGILE 276          
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A7R9UFF5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFF5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.190e-15
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            GVYYWQN S  + AQVRLETSDD   T+I +    EELDR   T+GY +KGM+ VK + +
Sbjct:   62 GVYYWQNASIENSAQVRLETSDDGMTTDIVVRAEKEELDRFQDTLGYSQKGMVYVKSIFD 121          
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A7S1VVB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVB4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.150e-14
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            GVYYW+ G R D  +V+L  +DDDT  EI + G+ EEL+R+ +T+G+ EKGMI+V+G+L+
Sbjct:  199 GVYYWKAGDRVDDCEVKLTANDDDTENEIAVQGSEEELERMWRTLGWQEKGMIKVEGVLD 258          
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: B7GC58_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC58_PHATC)

HSP 1 Score: 72.4 bits (176), Expect = 6.470e-14
Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            G+YYWQ+G R D   V+L T++++T  EI + G+ EEL+R+ +T+G+ EKGM+RV GLL+
Sbjct:  170 GIYYWQSGDRVDDCSVKLVTNEEETENEITVQGSEEELERMWRTLGWQEKGMVRVDGLLD 229          
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A7S3CSG8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CSG8_9SPIT)

HSP 1 Score: 68.6 bits (166), Expect = 1.960e-13
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            G YY + G R ++ +V++ TSDDD+  +I + G  EELDRLSK +G MEKG + VKGLLE
Sbjct:   52 GAYYLERGERVEQVKVKMVTSDDDSEVDITVQGDPEELDRLSKELGLMEKGKVYVKGLLE 111          
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A0D2MFH2_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MFH2_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 4.800e-13
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   10 VYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            VYY+Q G R ++ +V++ TSDDD  T+I + G  EE+ RLSK +G +EKGM+ VKG+LE
Sbjct:  115 VYYFQRGERAEEVRVKMVTSDDDLTTDIIVEGDQEEIARLSKELGLVEKGMVYVKGILE 173          
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: D8RQ05_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RQ05_SELML)

HSP 1 Score: 69.3 bits (168), Expect = 5.080e-13
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            G YYW N SR ++ QV+L  +DD++ T++ + G  E++++L K +G+MEKGM+ VKG+L+
Sbjct:  137 GAYYWTNASRKEEIQVKLVVADDESSTDVLVQGDDEQIEQLRKELGFMEKGMVYVKGILQ 196          
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A7S1GP37_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GP37_CYCTE)

HSP 1 Score: 68.9 bits (167), Expect = 5.280e-13
Identity = 26/60 (43.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    7 GVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            G+YYW++G R D  +V+L T++++T  EI + G+ EE++R+ +T+G+ EKGM++V G+ E
Sbjct:  120 GIYYWKSGDRVDDCEVKLSTNEEETENEILVQGSDEEIERMWRTLGWAEKGMVKVAGIFE 179          
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Match: A0A2V0P2I6_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P2I6_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 6.430e-12
Identity = 28/59 (47.46%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   10 VYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 186
            VYY+Q G R ++ +V++ T+DDD  T+I + G  EE+ R++K +G +EKGM+ VKG+LE
Sbjct:  126 VYYYQKGERAEEVRVKMVTADDDMTTDIVVEGDQEEIARMAKELGLVEKGMVYVKGILE 184          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15720.4220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LHH2_ECTSI5.670e-33100.00CPLD51 protein required for cyt b6 assembly n=2 Ta... [more]
A0A835YMB8_9STRA1.320e-2273.33CPLD51 protein required for cyt b6 assembly n=1 Ta... [more]
A0A7R9UFF5_9STRA5.190e-1555.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1VVB4_9STRA6.150e-1451.67Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B7GC58_PHATC6.470e-1450.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3CSG8_9SPIT1.960e-1353.33Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
A0A0D2MFH2_9CHLO4.800e-1352.54Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
D8RQ05_SELML5.080e-1345.00Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
A0A7S1GP37_CYCTE5.280e-1343.33Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A2V0P2I6_9CHLO6.430e-1247.46Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15720contigEcto-sp13_S_contig15720:2241..2920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score123.2
Seed ortholog evalue4.1e-26
Seed eggNOG ortholog2880.D8LHH2
Preferred nameCCB1
Model size186
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0010190,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071840
Exons2
EggNOG free text desc.Cofactor assembly of complex C subunit B
EggNOG OGs2AZTV@1,2QR1Q@2759
Cds size186
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.4862888-CDS-Ecto-sp13_S_contig15720:2240..23211681462831.4862888-CDS-Ecto-sp13_S_contig15720:2240..2321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15720 2241..2321 -
1681462831.5045989-CDS-Ecto-sp13_S_contig15720:2815..29201681462831.5045989-CDS-Ecto-sp13_S_contig15720:2815..2920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15720 2816..2920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15720.4220.1prot_Ecto-sp13_S_contig15720.4220.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15720 2241..2920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15720.4220.1

>prot_Ecto-sp13_S_contig15720.4220.1 ID=prot_Ecto-sp13_S_contig15720.4220.1|Name=mRNA_Ecto-sp13_S_contig15720.4220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
CRGVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYM
EKGMIRVKGLLE
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mRNA from alignment at Ecto-sp13_S_contig15720:2241..2920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15720.4220.1 ID=mRNA_Ecto-sp13_S_contig15720.4220.1|Name=mRNA_Ecto-sp13_S_contig15720.4220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=680bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15720:2241..2920- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTAGAGGCGTTTACTACTGGCAAAACGGCTCGCGGAACGATAAGGCGCA GGTGCGGCTGGAGACCTCAGACGACGACACTTTGACGGAGATTTACATTA CGGGGGTGAGAGCGAGAAAGGTTTTCTGCTGAGTGCGTTGCTGTGGTCCT TGGCCTATTTTTTTTTACATCACTTCCATTTTTGTTTAGGAAAACGAGAA TGGCTGTCCATGGTGGAATAGCAGGAGGTGCACGTGTGATATCAGTAGTG GAGGTACTGATGGACCCCGCGAGAAAAGTAGCAGCGGAGGGCGTCGGTGG TACTCACCGGATGAATTTCGCAGGGTCGAGCTCGAAGACAGGATGCAGCT ATCTGGTTTTGTTTGCGACTCCCTTCCATCTTCGTTGGATGCAGAACGTA CACGTTTTGCTGAGCGAACTACGAATGCCAGTCAGCGCGAGAGAGGCTTA CAGTGCGGAGCCGACAGGAAACTGCCGAGGTGTAACCCTCTTTTCGTCAA CGTTTAAATTCGTCCCACTCAAACTTGTGGAAATTCTACGGTACCGACCC AATCCTCCCCCAACTCCCGATCGTTTTCGTGAAAATCCCTTGAACGAAGG CGGCGGAGGAGTTGGACCGCTTGTCCAAGACCATGGGGTACATGGAGAAG GGCATGATCAGAGTCAAGGGGTTGCTCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15720:2241..2920-

>mRNA_Ecto-sp13_S_contig15720.4220.1 ID=mRNA_Ecto-sp13_S_contig15720.4220.1|Name=mRNA_Ecto-sp13_S_contig15720.4220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15720:2241..2920- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTAGAGGCGTTTACTACTGGCAAAACGGCTCGCGGAACGATAAGGCGCA
GGTGCGGCTGGAGACCTCAGACGACGACACTTTGACGGAGATTTACATTA
CGGGGGCGGCGGAGGAGTTGGACCGCTTGTCCAAGACCATGGGGTACATG
GAGAAGGGCATGATCAGAGTCAAGGGGTTGCTCGAG
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