mRNA_Ecto-sp13_S_contig1572.4217.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1572.4217.1
Unique NamemRNA_Ecto-sp13_S_contig1572.4217.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1572.4217.1 vs. uniprot
Match: D7G5E6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E6_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 9.380e-76
Identity = 129/136 (94.85%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:    1 ITKGIDELTTPVASSLGEMPGYFESRASAWDKIGSKKSKESKTSSSASKDTGGKDGDSXXXXXXXXXXEKTSESSFAPDSANYLVALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 408
            + KGIDELTTPVASSLGEMPGYFESRASAWDKIG+KKSKESKTSSSASKDTGGKDGDSXXXXXXXX  EKTSESSFAPDSAN+L+ALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF
Sbjct:  109 VAKGIDELTTPVASSLGEMPGYFESRASAWDKIGNKKSKESKTSSSASKDTGGKDGDSXXXXXXXXTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 244
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BLAST of mRNA_Ecto-sp13_S_contig1572.4217.1 vs. uniprot
Match: A0A8K1CBJ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBJ1_PYTOL)

HSP 1 Score: 83.6 bits (205), Expect = 6.300e-17
Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 1 
Query:    1 ITKGIDELTTPVASSLGEMPGYFESRASAWDKIGSKKSKESKTSSSASKDTGGKDGDSXXXXXXXXXXEKTSESSFAPDSANYLVALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMY 402
            + K I + T  +  +   +P Y   RA+A +K+  K+SKE   +++ ++ TGGK+GD           E ++ ++   D    +VA+DVKWF +L  TL   RD+  +  D +EKN +K+LRP+     G GMY
Sbjct:  110 VLKEIKDATDKLQKAWDSLPDYHSQRATAIEKLNDKRSKEKTVTTTVTESTGGKEGDEKKSVVSSVDKESSTSAAPVDDWIAQVVAIDVKWFYNLARTLEIVRDAYAIVYDRVEKNKDKILRPRNQERAGYGMY 243
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BLAST of mRNA_Ecto-sp13_S_contig1572.4217.1 vs. uniprot
Match: A0A7S4HM23_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HM23_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.290e-14
Identity = 54/139 (38.85%), Postives = 73/139 (52.52%), Query Frame = 1 
Query:    1 ITKGIDELTTPVASSLGEMPGYFESRASAWDKIGSKKSK--ESKTSSSASKDTGGKDGDSXXXXXXXXXXEKTSESSFAP-DSANYLVALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 408
            +TK + E        L ++PGY+ +RA A DK+G  K+   ESKT S AS+ TGGKDGD+          EKTS         A ++VALDV+ ++ L   L   RD+     D +EKN EKL  PKG+   G  M  +
Sbjct:   82 VTKFMSETRERWTKILEKLPGYYGARADAVDKLGLPKTSASESKTES-ASRSTGGKDGDASTTETKTIKEEKTSNGCAVDVHRATHVVALDVQTYLELGDALADLRDTYATVLDNVEKNKEKLTAPKGSGGSGHSMGMY 219
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BLAST of mRNA_Ecto-sp13_S_contig1572.4217.1 vs. uniprot
Match: A0A7S4M6A7_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M6A7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.010e-14
Identity = 54/139 (38.85%), Postives = 73/139 (52.52%), Query Frame = 1 
Query:    1 ITKGIDELTTPVASSLGEMPGYFESRASAWDKIGSKKSK--ESKTSSSASKDTGGKDGDSXXXXXXXXXXEKTSESSFAP-DSANYLVALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 408
            +TK + E        L ++PGY+ +RA A DK+G  K+   ESKT S AS+ TGGKDGD+          EKTS         A ++VALDV+ ++ L   L   RD+     D +EKN EKL  PKG+   G  M  +
Sbjct:  110 VTKFMSETRERWTKILEKLPGYYGARADAVDKLGLPKTSASESKTES-ASRSTGGKDGDASTTETKTIKEEKTSNGCAVDVHRATHVVALDVQTYLELGDALADLRDTYATVLDNVEKNKEKLTAPKGSGGSGHSMGMY 247
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BLAST of mRNA_Ecto-sp13_S_contig1572.4217.1 vs. uniprot
Match: K3WA13_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA13_GLOUD)

HSP 1 Score: 74.7 bits (182), Expect = 1.400e-13
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:   64 YFESRASAWDKIGSKKSKESKTSSSASKDTGGKDGDSXXXXXXXXXXEKTSESSFAPDSANYLVALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTN 381
            Y+  RA+A +K+  K +KES  S++ +  TGGKDGD           E  +  +   D  +Y+VA+D+KW+ +L  TL   RD   + AD+IEKN +K++ P+G +
Sbjct:  130 YYNQRATAVEKVNDKIAKESSKSTTVTATTGGKDGDENKSVTTSLDKETATSGTVVDDWVSYIVAVDLKWYFNLARTLEAIRDQYAVTADIIEKNKDKIVLPRGNS 235
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BLAST of mRNA_Ecto-sp13_S_contig1572.4217.1 vs. uniprot
Match: A0A2D4BJC1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJC1_PYTIN)

HSP 1 Score: 74.3 bits (181), Expect = 1.980e-13
Identity = 42/134 (31.34%), Postives = 67/134 (50.00%), Query Frame = 1 
Query:    1 ITKGIDELTTPVASSLGEMPGYFESRASAWDKIGSKKSKESKTSSSASKDTGGKDGDSXXXXXXXXXXEKTSESSFAPDSANYLVALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMY 402
            + K + E +  +  +   +P Y   RA+  +K+    SKE+ T+++ +  TG K+GD           E  +      D    +VA+DVKW+  L   L   RD+  +A D IEKN +K+L+P+G    G GMY
Sbjct:  111 VMKELKETSDKLQKAWDALPDYHSQRATVLEKLNEXLSKETSTTNTVTATTGXKEGDEKKTVVATVGKETATAQPVVEDWIANVVAIDVKWYFHLARVLELVRDAYAIAFDRIEKNKDKILKPRGQERSGYGMY 244
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BLAST of mRNA_Ecto-sp13_S_contig1572.4217.1 vs. uniprot
Match: A0A5D6XIL9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIL9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.030e-11
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:   64 YFESRASAWDKIGSKKSKESKTSSSASKDTGGKDGDSXXXXXXXXXXEKTSESSFAPDSANYLVALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTN 381
            Y   RA+A +K+  K +KE  TS++ +  TGGKD D           E  + ++   D A ++VA+DVKW+ +L  TL   RD   +  D++EKN +K+L P+G++
Sbjct:  130 YHSQRAAAAEKLNDKVAKEKATSATTTATTGGKDADETKTVTMTSEKETATTAAPVEDWAAFVVAVDVKWYFNLARTLEAVRDQYAVTFDIVEKNRDKILLPRGSS 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1572.4217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G5E6_ECTSI9.380e-7694.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1CBJ1_PYTOL6.300e-1733.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4HM23_9STRA1.290e-1438.85Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4M6A7_9STRA2.010e-1438.85Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
K3WA13_GLOUD1.400e-1336.79Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BJC1_PYTIN1.980e-1331.34Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6XIL9_9STRA2.030e-1135.85Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1572contigEcto-sp13_S_contig1572:3289..4074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score234.2
Seed ortholog evalue3.7e-59
Seed eggNOG ortholog2880.D7G5E6
Preferred namePSME3
Model size411
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K06698
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,ko03050,ko04612,ko05160,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110,map03050,map04612,map05160
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0002039,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010564,GO:0010604,GO:0010646,GO:0010648,GO:0010941,GO:0010950,GO:0010952,GO:0016504,GO:0016579,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0036211,GO:0042176,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0061133,GO:0061134,GO:0061135,GO:0061136,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0097371,GO:0098772,GO:1901564,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903050,GO:1903362,GO:1905368,GO:1905369,GO:2000045,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons2
EggNOG free text desc.endopeptidase activator activity
EggNOG OGsKOG4470@1,KOG4470@2759
EC1.4.3.21
Cds size411
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03051,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462831.2713535-CDS-Ecto-sp13_S_contig1572:3288..34501681462831.2713535-CDS-Ecto-sp13_S_contig1572:3288..3450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1572 3289..3450 +
1681462831.2824295-CDS-Ecto-sp13_S_contig1572:3825..40741681462831.2824295-CDS-Ecto-sp13_S_contig1572:3825..4074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1572 3826..4074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1572.4217.1prot_Ecto-sp13_S_contig1572.4217.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1572 3289..4074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1572.4217.1

>prot_Ecto-sp13_S_contig1572.4217.1 ID=prot_Ecto-sp13_S_contig1572.4217.1|Name=mRNA_Ecto-sp13_S_contig1572.4217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
ITKGIDELTTPVASSLGEMPGYFESRASAWDKIGSKKSKESKTSSSASKD
TGGKDGDSSKTSDSTSTEEKTSESSFAPDSANYLVALDVKWFVSLHHTLL
RARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF*
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mRNA from alignment at Ecto-sp13_S_contig1572:3289..4074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1572.4217.1 ID=mRNA_Ecto-sp13_S_contig1572.4217.1|Name=mRNA_Ecto-sp13_S_contig1572.4217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1572:3289..4074+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCACGAAGGGGATCGACGAGCTCACGACTCCGGTGGCGAGCAGCCTCGG
AGAGATGCCGGGTTACTTCGAGAGCCGGGCTTCGGCGTGGGACAAGATCG
GGAGCAAGAAGTCCAAAGAGAGCAAGACCTCATCGTCTGCTTCCAAGGAC
ACCGGGGGAAAGGTCCGTGCGTGTGATGAAATTTGAGTAAAACTGCTGTC
GTCCGTGTTGGGTGCGTGTCCATTCATGAAACGCGGGGTGGTTTTTGCTT
GGGATTGGAAAACCAACGTGGCATGCATACTTCCTTCGTATTTTTCCTCG
GTCGCCCGTTCGGGTTCTACCAACTCTACCGATGCACGTGACGAAAATGC
CACTGTTGCTCCTGCTGTACTCGATACCTTTCGATACTTCGTGGACATGA
ACCAGACTTGACGTAGAAATAACATCCCATCCAGGCCAGACAGTGTTGGT
TTGGGCTGGTTTTACGCCTCCCATTTCTCTCTCTCCCTCTTCATGCCGCG
AATATTGCACCAACCGCTGTGTTGTTTCTTTCTCCAGGACGGGGACTCTT
CTAAGACCTCCGACTCCACCAGCACCGAAGAAAAGACCTCCGAATCTTCC
TTCGCGCCTGACTCGGCCAACTACCTCGTCGCCCTCGACGTGAAGTGGTT
CGTTTCCCTGCACCACACCCTGCTAAGAGCCAGGGATTCCTTGGTCCTCG
CAGCGGACATGATCGAGAAGAACATGGAGAAGCTCTTGCGTCCCAAGGGC
ACCAACACGCAGGGTGGTGGCATGTACTCGTTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1572:3289..4074+

>mRNA_Ecto-sp13_S_contig1572.4217.1 ID=mRNA_Ecto-sp13_S_contig1572.4217.1|Name=mRNA_Ecto-sp13_S_contig1572.4217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1572:3289..4074+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCACGAAGGGGATCGACGAGCTCACGACTCCGGTGGCGAGCAGCCTCGG
AGAGATGCCGGGTTACTTCGAGAGCCGGGCTTCGGCGTGGGACAAGATCG
GGAGCAAGAAGTCCAAAGAGAGCAAGACCTCATCGTCTGCTTCCAAGGAC
ACCGGGGGAAAGGACGGGGACTCTTCTAAGACCTCCGACTCCACCAGCAC
CGAAGAAAAGACCTCCGAATCTTCCTTCGCGCCTGACTCGGCCAACTACC
TCGTCGCCCTCGACGTGAAGTGGTTCGTTTCCCTGCACCACACCCTGCTA
AGAGCCAGGGATTCCTTGGTCCTCGCAGCGGACATGATCGAGAAGAACAT
GGAGAAGCTCTTGCGTCCCAAGGGCACCAACACGCAGGGTGGTGGCATGT
ACTCGTTCTAA
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