prot_Ecto-sp13_S_contig15719.4216.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15719.4216.1
Unique Nameprot_Ecto-sp13_S_contig15719.4216.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length101
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.080e-23
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 
Query:   49 DYIDGVGRSRGRQSIPMEERFWHRVGRQMPSRNFMTLFRCMKSTFAALVSEL 100
            DYIDGVGRSRGRQSIPMEERFWHRVGR+MPSRNFM LFRCM+ TFAALV EL
Sbjct:    5 DYIDGVGRSRGRQSIPMEERFWHRVGREMPSRNFMILFRCMRPTFAALVKEL 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15719.4216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRZ1_ECTSI1.080e-2390.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..100
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15719contigEcto-sp13_S_contig15719:422..1712 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15719.4216.1mRNA_Ecto-sp13_S_contig15719.4216.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15719 367..3907 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15719.4216.1 ID=prot_Ecto-sp13_S_contig15719.4216.1|Name=mRNA_Ecto-sp13_S_contig15719.4216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MDHGEMLAVLMSAVLAGMEQIHLILLLESAREQDLLAYLGLFDRHDVQDY
IDGVGRSRGRQSIPMEERFWHRVGRQMPSRNFMTLFRCMKSTFAALVSEL
*
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