mRNA_Ecto-sp13_S_contig15713.4213.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15713.4213.1
Unique NamemRNA_Ecto-sp13_S_contig15713.4213.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15713.4213.1 vs. uniprot
Match: D8LFL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL5_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 1.870e-153
Identity = 296/315 (93.97%), Postives = 301/315 (95.56%), Query Frame = 1 
Query:    1 DSSFVENAAGKGGSGGGIWVEDGAKAVLARTEFVNNTAASSYTHKGAGGGIAVSASASLTMSDGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQATTXXXXXXXXXXXXXXXXXXXAFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFASPSFTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPPPTFVNCTFTSNIAGSGGVPADGNALGRGRRQGHGIGGALAAIASSPLLTGCSFWNNSAVAVFPSSGE 945
            DSSFV NAAGKGGSGGGIWVEDGAKAVLART+FVNNTAASSYTHKGAGGG+AVSASASLTMS+GCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQAT    XXXXXXXXXXXXXX  AFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFA P FTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ETPPPTFVNC FTSNIAGSGGVP DGNALGRG RQGHGIGGALAAIASSPLL+GCSFWNNSAVAVFPSS +
Sbjct:   60 DSSFVANAAGKGGSGGGIWVEDGAKAVLARTKFVNNTAASSYTHKGAGGGVAVSASASLTMSEGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQATAAVAXXXXXXXXXXXXXX--AFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFAFPRFTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ETPPPTFVNCKFTSNIAGSGGVPTDGNALGRGFRQGHGIGGALAAIASSPLLSGCSFWNNSAVAVFPSSSD 371
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BLAST of mRNA_Ecto-sp13_S_contig15713.4213.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 441 bits (1134), Expect = 4.800e-138
Identity = 295/312 (94.55%), Postives = 299/312 (95.83%), Query Frame = 1 
Query:    1 DSSFVENAAGKGGSGGGIWVEDGAKAVLARTEFVNNTAASSYTHKGAGGGIAVSASASLTMSDGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQATTXXXXXXXXXXXXXXXXXXXAFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFASPSFTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPPPTFVNCTFTSNIAGSGGVPADGNALGRGRRQGHGIGGALAAIASSPLLTGCSFWNNSAVAVFPS 936
            DSSFV NAAGKGGSGGGIWVEDGAKAVLART+FVNNTAASSYTHKGAGGG+AVSASASLTMS+GCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQAT    XXXXXXXXXXXXXX  AFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFA P FTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ETPPPTFVNC FTSNIAGSGGVP DGNALGRG RQGHGIGGALAAIASSPLL+GCSFWNNSAVAVFPS
Sbjct:  455 DSSFVANAAGKGGSGGGIWVEDGAKAVLARTKFVNNTAASSYTHKGAGGGVAVSASASLTMSEGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQATAAVAXXXXXXXXXXXXXX--AFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFAFPRFTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ETPPPTFVNCKFTSNIAGSGGVPTDGNALGRGFRQGHGIGGALAAIASSPLLSGCSFWNNSAVAVFPS 763
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BLAST of mRNA_Ecto-sp13_S_contig15713.4213.1 vs. uniprot
Match: A0A6H5K5Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q8_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.250e-82
Identity = 212/256 (82.81%), Postives = 220/256 (85.94%), Query Frame = 1 
Query:  181 MSDGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQATTXXXXXXXXXXXXXXXXXXXAFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFASPSFTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---ETPPPTFVNCTFTSN-IAGSGGVPADGNALGRGRRQGHGIGGALAAIASSPLLTGCSFWNNSAVAVFPS 936
            MS+GCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAI+LSGVS+RRNRCETGALDAGCSGGAVSLTGRGPQATT    XXXXXXXXXXX     FDDCLFE NEARGAATNNVYSGAGQGGAAAIRFA P FTGCNFTGN AEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ETPPPTFV+  F+   + G  G+P            GHGIGGALAAIASSPLL+GCSFWNNSAVAVFPS
Sbjct:    1 MSEGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAISLSGVSMRRNRCETGALDAGCSGGAVSLTGRGPQATTAVAGXXXXXXXXXXXA---TFDDCLFERNEARGAATNNVYSGAGQGGAAAIRFAFPRFTGCNFTGNVAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPPPTFVSVGFSRRAVVGRSGIP------------GHGIGGALAAIASSPLLSGCSFWNNSAVAVFPS 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15713.4213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFL5_ECTSI1.870e-15393.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTH4_ECTSI4.800e-13894.55Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K5Q8_9PHAE1.250e-8282.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15713contigEcto-sp13_S_contig15713:1437..3953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score446.8
Seed ortholog evalue8.4e-123
Seed eggNOG ortholog2880.D7FTH4
Model size955
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionPectin lyase fold
Ec32 orthologEc-04_001770.1
Cds size954
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462830.943768-CDS-Ecto-sp13_S_contig15713:1436..16611681462830.943768-CDS-Ecto-sp13_S_contig15713:1436..1661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15713 1437..1661 +
1681462830.9554431-CDS-Ecto-sp13_S_contig15713:2166..23591681462830.9554431-CDS-Ecto-sp13_S_contig15713:2166..2359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15713 2167..2359 +
1681462830.9645913-CDS-Ecto-sp13_S_contig15713:2910..32451681462830.9645913-CDS-Ecto-sp13_S_contig15713:2910..3245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15713 2911..3245 +
1681462830.9802756-CDS-Ecto-sp13_S_contig15713:3752..39531681462830.9802756-CDS-Ecto-sp13_S_contig15713:3752..3953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15713 3753..3953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15713.4213.1prot_Ecto-sp13_S_contig15713.4213.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15713 1437..3953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15713.4213.1

>prot_Ecto-sp13_S_contig15713.4213.1 ID=prot_Ecto-sp13_S_contig15713.4213.1|Name=mRNA_Ecto-sp13_S_contig15713.4213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp
DSSFVENAAGKGGSGGGIWVEDGAKAVLARTEFVNNTAASSYTHKGAGGG
IAVSASASLTMSDGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAIT
LSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQATTAAAAGDEDNNNNDN
DSGGAAFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFASPSFTGCNFT
GNAAEGGGGAAPATGGAVLLFLSRGGGSSAAAAAAAAATSDGGMETPPPT
FVNCTFTSNIAGSGGVPADGNALGRGRRQGHGIGGALAAIASSPLLTGCS
FWNNSAVAVFPSSGEDE*
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mRNA from alignment at Ecto-sp13_S_contig15713:1437..3953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15713.4213.1 ID=mRNA_Ecto-sp13_S_contig15713.4213.1|Name=mRNA_Ecto-sp13_S_contig15713.4213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2517bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15713:1437..3953+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGAGCTTTGTCGAAAACGCGGCGGGAAAGGGGGGCTCCGGCGGAGG
AATCTGGGTAGAGGACGGTGCGAAGGCGGTGCTGGCCAGGACGGAGTTCG
TCAACAACACCGCTGCATCCAGCTACACCCACAAGGGGGCCGGGGGGGGA
ATTGCGGTGTCGGCGTCGGCTAGCCTGACGATGTCCGACGGCTGCGTGCT
TGAAGGGAACGTGGCTGGGCCTGAGGTAGGGGGGGTCTGCGTCGGGAAAT
CTACCATTCCGCGTTGAACTTTCGTAGCTGCTGTTCGTTTTTTGCTCTGC
TGCTGTTCTTCGTTTCCTGATAATAGTTATCATCGAAAACTACATTTCCT
TTGTCATTGGGGGCTCAACTAGGGTCGCATGTGTCTTGGTGGTCTTATGG
GTTTGGCTTCCCGCGGTTTTATCTTCTATTTTGCGATTCTCGGTGCTGGG
AAGGAACGGTTTGGATGATGTTGTTTGCGTTTGCGCTCGCGGTCACGCCG
ACCACCGCAAGGCCACTCAACGTGCTGAGCTGTCGATTTCCCCACCGCAA
GGTTTCGACGCATGGTCTGCTTGCGTCTTCTCGCCAAACCTTGTCAGGCT
GTGAATACAGCGTCCTCTTTCACAACCCCCCCCACAACAATGGGTCAACG
TTTTTCTTATAATCCTCCCGCCACGCATCCTGTCCATGTCCATACATGGC
ACCTCCCCCTCCAATCCGCGCTGCCGCCAGGACGTCGGGGCGTCGGACCC
TTCTTGCTTGTCCGGTCAAGGCGGCGGGATCCACGTCTCCGGGTCGGCCA
TCACCCTGTCAGGCGTTTCTCTGAGGCGAAACCGCTGCGAGACGGGGGCT
CTCGACGCCGGCTGCTCGGGAGGCGCGGTCAGCCTCACCGGGCGGGGGCC
TCAGGCGACGACTGCCGCGGCAGGTGAGTGGTTGTGGCGTTTTTGTCGAA
GAAAGGAGGGCTGGTGGTATAGCGGGGTCGTGATCGGGAGACGCTGAGGC
GGGGGGCGGGGCTGTAAGGTTGTCGTCTTTTTCTGATGGCGTCGATTAGG
TGGGGGAGGATGAGTTTTGCGAAAGAAGCCACGTTCGGTTGGTTGCCGTT
GGAGGCGCCTGTCAGCTTAGCTTTCGTGGGAAGGGGCAGAGCGGGCGGCG
GTCGGCCAATCAGAGTCGCGGAAACCTCTGCCGGAGATCCCTTCTGCTGT
GTCATGCCTAAAATGCCTACAACTCGGCACGCATAACGCTCATACGATTT
GGAGGGGGGGGGGGGGCATTGAAATTGCGGAAGGCTCTACCGATGATCTC
TAATACCGTGCTATGCTCGACGCCAAACAGCGTTCATCTCCGTTGGTTCC
CGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCTGGTGCCTCTCGCTGGT
GCTGCATGCATTCCACACGGATGCTTCTGCCCCCCTCAAAAACAAACGTT
CGGTTGGATGCTCTCCTCCCCCAGCAGGCGACGAGGACAACAACAACAAC
GACAACGACAGCGGAGGGGCGGCCTTCGACGACTGCCTGTTCGAGGGCAA
CGAGGCCAGGGGAGCGGCCACGAACAACGTCTACAGCGGGGCCGGCCAGG
GCGGCGCCGCGGCGATCCGCTTCGCCTCTCCCAGTTTTACCGGGTGCAAC
TTCACCGGGAACGCGGCCGAAGGTGGAGGTGGCGCGGCCCCGGCTACCGG
CGGAGCGGTGCTGCTGTTCCTTTCCCGGGGAGGAGGAAGCTCCGCCGCCG
CCGCCGCGGCCGCTGCCGCCACCTCAGACGGCGGAATGGAAACCCCGCCC
CCGACGTTTGTGAGTGTTGGCTTCAGCCGGAGGGCTGTGGTCGGTCGGTC
GGGCATCCCCGCATGTTCTTGAGAAGGGGGGTGTTGCATGTGAATTGCTG
GCTCTAAATGGGTACGAGTTGCCGGTCGTGCTGCTCGCTCGTAGCCGCTG
CGAGCTCGCGCGATTCACTGTTTTTGCCGCAGTGTTTGTGGTGTTGAGAC
CGCTCTTTGTGGACACGTTTTCAGAGGGACGTCGATCATCTGCCGGGTGA
GGCAGCTTTTTTTGTTTTTGTCTCACAACTTTTGTACGGCTTTTTCTGCT
GTGGAGGTTGTATTTTGTCGCCGAAGCGTACCGCGTTTGTGGACTTTCGT
TGGTGTTCTCCAGATACCTCAAACACCTTTCCTCTCTCTCCATAAGACCA
TTGAAGTCCCTGAGAAAAAATCAAACCTGAATCTTGCCGAGCCGGGCACT
GAACGGGAACCAAAATTTGGTTGCGTTACGCGTGACGTTTGTTTTCTCGA
CGGGGTTTCCCCCAAGGTTAACTGCACTTTTACCTCAAACATCGCCGGAT
CCGGGGGCGTCCCCGCAGACGGAAATGCCTTGGGGAGGGGTAGGAGGCAG
GGGCACGGGATCGGAGGGGCTCTGGCTGCGATTGCCTCTTCGCCTCTGCT
CACGGGCTGCTCGTTCTGGAACAACTCTGCCGTGGCGGTGTTCCCGTCTT
CTGGTGAGGATGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15713:1437..3953+

>mRNA_Ecto-sp13_S_contig15713.4213.1 ID=mRNA_Ecto-sp13_S_contig15713.4213.1|Name=mRNA_Ecto-sp13_S_contig15713.4213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15713:1437..3953+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGAGCTTTGTCGAAAACGCGGCGGGAAAGGGGGGCTCCGGCGGAGG
AATCTGGGTAGAGGACGGTGCGAAGGCGGTGCTGGCCAGGACGGAGTTCG
TCAACAACACCGCTGCATCCAGCTACACCCACAAGGGGGCCGGGGGGGGA
ATTGCGGTGTCGGCGTCGGCTAGCCTGACGATGTCCGACGGCTGCGTGCT
TGAAGGGAACGTGGCTGGGCCTGAGGACGTCGGGGCGTCGGACCCTTCTT
GCTTGTCCGGTCAAGGCGGCGGGATCCACGTCTCCGGGTCGGCCATCACC
CTGTCAGGCGTTTCTCTGAGGCGAAACCGCTGCGAGACGGGGGCTCTCGA
CGCCGGCTGCTCGGGAGGCGCGGTCAGCCTCACCGGGCGGGGGCCTCAGG
CGACGACTGCCGCGGCAGCAGGCGACGAGGACAACAACAACAACGACAAC
GACAGCGGAGGGGCGGCCTTCGACGACTGCCTGTTCGAGGGCAACGAGGC
CAGGGGAGCGGCCACGAACAACGTCTACAGCGGGGCCGGCCAGGGCGGCG
CCGCGGCGATCCGCTTCGCCTCTCCCAGTTTTACCGGGTGCAACTTCACC
GGGAACGCGGCCGAAGGTGGAGGTGGCGCGGCCCCGGCTACCGGCGGAGC
GGTGCTGCTGTTCCTTTCCCGGGGAGGAGGAAGCTCCGCCGCCGCCGCCG
CGGCCGCTGCCGCCACCTCAGACGGCGGAATGGAAACCCCGCCCCCGACG
TTTGTTAACTGCACTTTTACCTCAAACATCGCCGGATCCGGGGGCGTCCC
CGCAGACGGAAATGCCTTGGGGAGGGGTAGGAGGCAGGGGCACGGGATCG
GAGGGGCTCTGGCTGCGATTGCCTCTTCGCCTCTGCTCACGGGCTGCTCG
TTCTGGAACAACTCTGCCGTGGCGGTGTTCCCGTCTTCTGGTGAGGATGA
GTGA
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