mRNA_Ecto-sp13_S_contig15713.4212.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15713.4212.1
Unique NamemRNA_Ecto-sp13_S_contig15713.4212.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15713.4212.1 vs. uniprot
Match: D8LFL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL5_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.260e-23
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 AGIGGGAYLDDSDASVSGCRFEHNVAEGIDLFGQLASFGAGMATRGPTHGLAMRHDFSF 177
            AGIGGGAYLDDSDA+VSGCRFE+NVAEGIDLFGQLASFGAG+ATRGPTH L M  D SF
Sbjct:    6 AGIGGGAYLDDSDATVSGCRFENNVAEGIDLFGQLASFGAGLATRGPTHVLDMS-DSSF 63
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BLAST of mRNA_Ecto-sp13_S_contig15713.4212.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.410e-21
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 AGIGGGAYLDDSDASVSGCRFEHNVAEGIDLFGQLASFGAGMATRGPTHGLAMRHDFSF 177
            AGIGGGAYLDDSDA+VSGCRFE+NVAEGIDLFGQLASFGAG+AT GPT  L M  D SF
Sbjct:  401 AGIGGGAYLDDSDATVSGCRFENNVAEGIDLFGQLASFGAGLATGGPTQVLDMS-DSSF 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15713.4212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFL5_ECTSI1.260e-2386.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTH4_ECTSI4.410e-2183.05Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15713contigEcto-sp13_S_contig15713:605..791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score94.4
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D7FTH4
Model size187
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Cds size186
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462830.905898-CDS-Ecto-sp13_S_contig15713:604..7901681462830.905898-CDS-Ecto-sp13_S_contig15713:604..790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15713 605..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15713.4212.1prot_Ecto-sp13_S_contig15713.4212.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15713 605..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15713.4212.1

>prot_Ecto-sp13_S_contig15713.4212.1 ID=prot_Ecto-sp13_S_contig15713.4212.1|Name=mRNA_Ecto-sp13_S_contig15713.4212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
AGIGGGAYLDDSDASVSGCRFEHNVAEGIDLFGQLASFGAGMATRGPTHG
LAMRHDFSFARL
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mRNA from alignment at Ecto-sp13_S_contig15713:605..791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15713.4212.1 ID=mRNA_Ecto-sp13_S_contig15713.4212.1|Name=mRNA_Ecto-sp13_S_contig15713.4212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15713:605..791+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGCATCGGTGGCGGGGCATACCTGGACGACTCCGACGCGTCCGTGAG
TGGCTGCCGTTTCGAGCACAACGTGGCGGAGGGAATCGATCTGTTTGGTC
AGCTGGCGTCCTTCGGGGCTGGGATGGCGACTCGCGGACCCACGCACGGC
TTAGCCATGAGGCACGACTTTTCCTTCGCACGGCTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15713:605..791+

>mRNA_Ecto-sp13_S_contig15713.4212.1 ID=mRNA_Ecto-sp13_S_contig15713.4212.1|Name=mRNA_Ecto-sp13_S_contig15713.4212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15713:605..791+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGCATCGGTGGCGGGGCATACCTGGACGACTCCGACGCGTCCGTGAG
TGGCTGCCGTTTCGAGCACAACGTGGCGGAGGGAATCGATCTGTTTGGTC
AGCTGGCGTCCTTCGGGGCTGGGATGGCGACTCGCGGACCCACGCACGGC
TTAGCCATGAGGCACGACTTTTCCTTCGCACGGCTT
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