mRNA_Ecto-sp13_S_contig15705.4210.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: D7FJG4_ECTSI (Prefoldin subunit, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG4_ECTSI) HSP 1 Score: 266 bits (680), Expect = 1.180e-88 Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 1
Query: 205 MEESKAPGGAEGGVGGQQLNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQEAQAMSQAQGVPTPQALQA 639
MEESKAPGGAEGGVGGQ+LNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQEAQAMSQAQG+PTPQALQA
Sbjct: 1 MEESKAPGGAEGGVGGQELNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQEAQAMSQAQGIPTPQALQA 145
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: A0A835YP58_9STRA (Putative prefoldin subunit (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP58_9STRA) HSP 1 Score: 124 bits (310), Expect = 7.200e-33 Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 259 LNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGT--RRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQEAQAMSQAQ 609
L EQQ+I Y+ +LGD + +RRKI+ELEQE +EH++V++TLE +E RRA+RLVGGVLVERTV +VLP+V+AN GIKQ+L LAT KE+ AA WKIKY IR+Q E QA + AQ
Sbjct: 1 LTEQQVISHYKQLLGDCSAIRRKIAELEQESTEHELVMETLEKVEEKTKRRAFRLVGGVLVERTVADVLPSVQANHAGIKQVLGHLATDLRAKEEAAAAWKIKYSIRTQDELQAGAAAQ 119
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: A0A7S0CI05_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI05_9STRA) HSP 1 Score: 119 bits (299), Expect = 9.320e-31 Identity = 63/119 (52.94%), Postives = 87/119 (73.11%), Query Frame = 1
Query: 253 QQLNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQEAQAMSQAQ 609
Q ++E+ ++ Y+ + NQ+ KI+ELE + +EH++V DTL+PLE TRRAYRLVGGVLVERTVGE+LP V N+E I+ +L L K+KE ++WK KY I++QQEAQAM +AQ
Sbjct: 35 QPIDEKTVLAKYKELQSSCNQLINKITELEFDRNEHRLVEDTLKPLETTRRAYRLVGGVLVERTVGEILPAVTTNKENIQMVLDNLQKNMEAKQKETSDWKAKYNIKTQQEAQAMQRAQ 153
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: A0A485LL89_9STRA (Aste57867_22558 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LL89_9STRA) HSP 1 Score: 115 bits (289), Expect = 8.480e-30 Identity = 59/108 (54.63%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 256 QLNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQ 579
Q+NEQQ+I TY+GM +V Q+ K++E+E E++EHQ V +TL +G+RRA+R+VGGVLVERTVGEVLP V +N EGI++L+ Q++ KE A W+ KY IRSQ
Sbjct: 5 QINEQQVIATYKGMKNEVRQLAEKLAEMELELNEHQRVAETLNGYDGSRRAFRMVGGVLVERTVGEVLPAVVSNAEGIQKLMVQVSDLLKQKESAANAWQTKYNIRSQ 112
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: A0A5D6XZ09_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ09_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.230e-29 Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 1
Query: 244 VGGQQLNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQ 582
+ G+ + EQQ++ TY+ + +V Q+ KI+ELE E++EH+ V+ TL+ L G R+AYR+VGGVLVERTV EVLP V AN++GI Q+L QL + KEK A +W+ KY I++QQ
Sbjct: 1 MAGEAITEQQVVATYKALRSEVRQLAEKIAELEVEIAEHERVLQTLQGLPGARKAYRMVGGVLVERTVAEVLPAVSANRDGIAQVLAQLGESLKQKEKSADDWQRKYNIQTQQ 113
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: A0A024TL10_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL10_9STRA) HSP 1 Score: 114 bits (284), Expect = 4.790e-29 Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 1
Query: 256 QLNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQ 579
QLNEQQ+I TY+GM +V Q+ K +ELE E+ EHQ V DTL+ +G+RRA+R+VGGVLVERTV EVLP V +N EGI++L+ Q+A KE A W+ +Y IRSQ
Sbjct: 5 QLNEQQVIATYKGMRNEVRQLAEKHAELELELHEHQRVADTLKGYDGSRRAFRMVGGVLVERTVAEVLPAVASNAEGIQKLIVQVADLLKQKEAAANAWQAQYNIRSQ 112
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: A0A484DY98_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DY98_BRELC) HSP 1 Score: 112 bits (280), Expect = 1.910e-28 Identity = 62/108 (57.41%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 259 LNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQ 582
+ EQQ++ TY+G+ +V QM KISELE EV EH V+ TL L R+AYR+VGGVLVERTV EVLP V AN++GI Q+L QL KEK A EW+ KYKI+ QQ
Sbjct: 5 ITEQQVVATYKGLRAEVRQMAEKISELEVEVLEHDRVIQTLNDLPKDRKAYRMVGGVLVERTVQEVLPAVTANRDGIAQVLAQLNGNIGQKEKAADEWQRKYKIQVQQ 112
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: A0A067BH75_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BH75_SAPPC) HSP 1 Score: 111 bits (277), Expect = 5.390e-28 Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 1
Query: 256 QLNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQ 579
QLNEQQ+I Y+GM ++ Q+ K++E+E E +EHQ V +TL+ L+G RRA+R+VGGVLVERTVGEVLP V +N EGI +++ Q+ KE A W+ KY IRSQ
Sbjct: 5 QLNEQQVIAQYKGMRTEIRQLAEKLAEMELEFTEHQRVAETLQALDGQRRAFRMVGGVLVERTVGEVLPAVVSNGEGIAKVMVQVEDLLKQKEAAANAWQAKYNIRSQ 112
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: K3WSV0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSV0_GLOUD) HSP 1 Score: 111 bits (277), Expect = 5.390e-28 Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 1
Query: 259 LNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQQ 582
+ EQQ+I TY+ M +V Q+ KI+ELE E +EH+ V+ TL+ L TR+AYR+VGGVLVERTV EVLP V +N++GI Q+L QL + KE+ A EW+ KY I++QQ
Sbjct: 5 ITEQQVIATYKAMRAEVRQLAEKIAELEVETTEHERVIQTLKDLPATRKAYRMVGGVLVERTVAEVLPAVTSNRDGIAQVLTQLNESIKQKEESANEWQRKYNIQTQQ 112
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Match: A0A6G0XHR2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHR2_9STRA) HSP 1 Score: 110 bits (276), Expect = 7.840e-28 Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1
Query: 256 QLNEQQIIGTYRGMLGDVNQMRRKISELEQEVSEHQMVVDTLEPLEGTRRAYRLVGGVLVERTVGEVLPTVKANQEGIKQLLQQLATTRANKEKEAAEWKIKYKIRSQ 579
QLNEQQ+I TY+GM +V Q+ K++ELE E +EHQ V +TL +G RRA+R+VGGVLVERTV EVLP V +N +GI++++ Q++ KE A W+ KY IR+Q
Sbjct: 5 QLNEQQVIATYKGMRNEVRQLAEKLAELELEFNEHQRVAETLNSYDGQRRAFRMVGGVLVERTVAEVLPAVVSNAQGIEKVMSQVSDLLKQKEAAANAWQAKYNIRAQ 112 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15705.4210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15705.4210.1 >prot_Ecto-sp13_S_contig15705.4210.1 ID=prot_Ecto-sp13_S_contig15705.4210.1|Name=mRNA_Ecto-sp13_S_contig15705.4210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp MHSRGAGFQHRRQQTRRKSAMEESKAPGGAEGGVGGQQLNEQQIIGTYRGback to top mRNA from alignment at Ecto-sp13_S_contig15705:1873..3942+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15705.4210.1 ID=mRNA_Ecto-sp13_S_contig15705.4210.1|Name=mRNA_Ecto-sp13_S_contig15705.4210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2070bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15705:1873..3942+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15705:1873..3942+ >mRNA_Ecto-sp13_S_contig15705.4210.1 ID=mRNA_Ecto-sp13_S_contig15705.4210.1|Name=mRNA_Ecto-sp13_S_contig15705.4210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15705:1873..3942+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |