prot_Ecto-sp13_S_contig15685.4201.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15685.4201.1
Unique Nameprot_Ecto-sp13_S_contig15685.4201.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length196
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15685.4201.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.340e-68
Identity = 173/200 (86.50%), Postives = 176/200 (88.00%), Query Frame = 0 
Query:    1 FLSESGNVYSCGSNEFGQQGRGEAGSAAQRSSASRNNADGSSRETSRSTHPVADGXXXXXXXXXXXSTNLCMLAPTIVTVTG-----GGVSGLRVQRVAAGDDHCTVLTSSEPNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQGSSSRRVFTWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL 195
            FLSESGNVYSCGSNEFGQQGRG AGSAAQRSSAS++NADGSSRETSRSTHP  DG XXXXXXX   ST+LCMLAPTIVT        GGVSGLRVQRVAAGDDHCTVLTSSEPNT    XXXXXXXXXXXXXXXXXXXXXXXX  S  SS RRVFTWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL
Sbjct: 1342 FLSESGNVYSCGSNEFGQQGRGGAGSAAQRSSASQSNADGSSRETSRSTHPAVDGGXXXXXXXV--STSLCMLAPTIVTXXXXXXXXGGVSGLRVQRVAAGDDHCTVLTSSEPNTVTATXXXXXXXXXXXXXXXXXXXXXXXXQGS--SSGRRVFTWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL 1537
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BLAST of mRNA_Ecto-sp13_S_contig15685.4201.1 vs. uniprot
Match: A0A6H5JWJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ8_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 9.190e-46
Identity = 153/200 (76.50%), Postives = 154/200 (77.00%), Query Frame = 0 
Query:    1 FLSESGNVYSCGSNEFGQQGRGEAGSAAQRSSASRNNADGSSRETSRSTHPVADGXXXXXXXXXXXSTNLCMLAPTIVTVTGG-----GVSGLRVQRVAAGDDHCTVLTSSEPNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQGSSSRRVFTWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL 195
            FLSESGNVYSCGSNEFGQQGRG AGSAA+RSS                       XXXXXXXXXXX       APTI           GVSGLRVQRVAAGDDHCTVLTSSEPNTAXXXXXXXXXXXXXXXXXXXXXXXXXXX  SQGSSSRRVFTWGLNAAGQCAHGR  EVVGAPQEAELLSGARAVGCGAGHTMVVL
Sbjct: 1015 FLSESGNVYSCGSNEFGQQGRGGAGSAARRSSXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTIXXXXXXXXXXXGVSGLRVQRVAAGDDHCTVLTSSEPNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXN-SQGSSSRRVFTWGLNAAGQCAHGRVVEVVGAPQEAELLSGARAVGCGAGHTMVVL 1211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15685.4201.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTN1_ECTSI1.340e-6886.50Similar to hect domain and RLD 4 n=1 Tax=Ectocarpu... [more]
A0A6H5JWJ8_9PHAE9.190e-4676.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 1..108
e-value: 7.9E-7
score: 29.9
coord: 110..195
e-value: 1.7E-7
score: 32.1
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 2..194
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 148..194
e-value: 1.3E-7
score: 32.1
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 147..195
score: 10.122
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 6..106
score: 9.057

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15685contigEcto-sp13_S_contig15685:172..759 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15685.4201.1mRNA_Ecto-sp13_S_contig15685.4201.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15685 172..1565 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15685.4201.1 ID=prot_Ecto-sp13_S_contig15685.4201.1|Name=mRNA_Ecto-sp13_S_contig15685.4201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
FLSESGNVYSCGSNEFGQQGRGEAGSAAQRSSASRNNADGSSRETSRSTH
PVADGGGGGGGGGGGASTNLCMLAPTIVTVTGGGVSGLRVQRVAAGDDHC
TVLTSSEPNTATATASAAAAAAAAVVSVSSSGRGGGGAGSSQGSSSRRVF
TWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
IPR000408Reg_chr_condens