mRNA_Ecto-sp13_S_contig15685.4201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15685.4201.1
Unique NamemRNA_Ecto-sp13_S_contig15685.4201.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15685.4201.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 2.240e-65
Identity = 173/200 (86.50%), Postives = 176/200 (88.00%), Query Frame = 1 
Query:    1 FLSESGNVYSCGSNEFGQQGRGEAGSAAQRSSASRNNADGSSRETSRSTHPVADGXXXXXXXXXXXSTNLCMLAPTIVTVTG-----GGVSGLRVQRVAAGDDHCTVLTSSEPNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQGSSSRRVFTWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL 585
            FLSESGNVYSCGSNEFGQQGRG AGSAAQRSSAS++NADGSSRETSRSTHP  DG XXXXXXX   ST+LCMLAPTIVT        GGVSGLRVQRVAAGDDHCTVLTSSEPNT    XXXXXXXXXXXXXXXXXXXXXXXX  S  SS RRVFTWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL
Sbjct: 1342 FLSESGNVYSCGSNEFGQQGRGGAGSAAQRSSASQSNADGSSRETSRSTHPAVDGGXXXXXXXV--STSLCMLAPTIVTXXXXXXXXGGVSGLRVQRVAAGDDHCTVLTSSEPNTVTATXXXXXXXXXXXXXXXXXXXXXXXXQGS--SSGRRVFTWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL 1537
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15685.4201.1 vs. uniprot
Match: A0A6H5JWJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 5.170e-43
Identity = 153/200 (76.50%), Postives = 154/200 (77.00%), Query Frame = 1 
Query:    1 FLSESGNVYSCGSNEFGQQGRGEAGSAAQRSSASRNNADGSSRETSRSTHPVADGXXXXXXXXXXXSTNLCMLAPTIVTVTGG-----GVSGLRVQRVAAGDDHCTVLTSSEPNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQGSSSRRVFTWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL 585
            FLSESGNVYSCGSNEFGQQGRG AGSAA+RSS                       XXXXXXXXXXX       APTI           GVSGLRVQRVAAGDDHCTVLTSSEPNTAXXXXXXXXXXXXXXXXXXXXXXXXXXX  SQGSSSRRVFTWGLNAAGQCAHGR  EVVGAPQEAELLSGARAVGCGAGHTMVVL
Sbjct: 1015 FLSESGNVYSCGSNEFGQQGRGGAGSAARRSSXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTIXXXXXXXXXXXGVSGLRVQRVAAGDDHCTVLTSSEPNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXN-SQGSSSRRVFTWGLNAAGQCAHGRVVEVVGAPQEAELLSGARAVGCGAGHTMVVL 1211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15685.4201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTN1_ECTSI2.240e-6586.50Similar to hect domain and RLD 4 n=1 Tax=Ectocarpu... [more]
A0A6H5JWJ8_9PHAE5.170e-4376.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15685contigEcto-sp13_S_contig15685:172..1565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score241.5
Seed ortholog evalue3.3e-61
Seed eggNOG ortholog2880.D7FTN1
Model size1395
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Cds size588
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.9919496-CDS-Ecto-sp13_S_contig15685:171..7591681462829.9919496-CDS-Ecto-sp13_S_contig15685:171..759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15685 172..759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462830.010376-UTR-Ecto-sp13_S_contig15685:759..15651681462830.010376-UTR-Ecto-sp13_S_contig15685:759..1565Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15685 760..1565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15685.4201.1prot_Ecto-sp13_S_contig15685.4201.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15685 172..759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15685.4201.1

>prot_Ecto-sp13_S_contig15685.4201.1 ID=prot_Ecto-sp13_S_contig15685.4201.1|Name=mRNA_Ecto-sp13_S_contig15685.4201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
FLSESGNVYSCGSNEFGQQGRGEAGSAAQRSSASRNNADGSSRETSRSTH
PVADGGGGGGGGGGGASTNLCMLAPTIVTVTGGGVSGLRVQRVAAGDDHC
TVLTSSEPNTATATASAAAAAAAAVVSVSSSGRGGGGAGSSQGSSSRRVF
TWGLNAAGQCAHGRAAEVVGAPQEAELLSGARAVGCGAGHTMVVL*
back to top

mRNA from alignment at Ecto-sp13_S_contig15685:172..1565+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15685.4201.1 ID=mRNA_Ecto-sp13_S_contig15685.4201.1|Name=mRNA_Ecto-sp13_S_contig15685.4201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15685:172..1565+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCTCTCGGAGTCCGGCAACGTATACTCCTGCGGCTCCAACGAGTTCGG
CCAGCAAGGGCGAGGCGAAGCTGGTTCCGCCGCTCAACGCTCCAGCGCCT
CCCGTAATAACGCCGATGGCTCGAGCAGGGAGACGTCAAGATCGACTCAT
CCAGTTGCGGACGGTGGCGGGGGCGGGGGCGGAGGCGGAGGCGGGGCATC
CACTAACCTATGTATGTTGGCCCCGACGATCGTCACCGTTACCGGCGGTG
GCGTATCTGGTCTCCGCGTCCAGAGGGTGGCGGCGGGGGACGACCACTGC
ACTGTGCTCACCTCCTCGGAGCCAAACACTGCCACCGCCACCGCTTCGGC
GGCGGCGGCGGCGGCGGCGGCGGTTGTCTCCGTCTCCTCCTCCGGCCGTG
GAGGCGGGGGAGCGGGGAGCTCCCAAGGCAGCAGCAGCAGGCGAGTCTTC
ACGTGGGGGCTGAACGCTGCCGGACAGTGCGCTCACGGGCGGGCGGCGGA
GGTCGTGGGGGCCCCGCAGGAAGCCGAGCTGTTGAGCGGTGCCAGGGCAG
TTGGCTGCGGGGCGGGGCATACAATGGTCGTTCTCTAGTGGGGTCGCCAA
AGAACGGGGGGGGGAGGGGAGCTTGGAAGTACTCACGAAACGACCATTAT
TCTATGACTACATATACATTGTATAGTCTTCCCGTCGGCGAACAACGGTA
ACGTGCGGTTTGGTGCGTTGGGACGCACTTGGTGGGTGGAGGTTCCCTGC
TCTGAGAGCCTCCACGGCTCTGTATTAGTAAATCCTCCGCCACTTGTGCC
CGTCAGCAAGTTGCTTTAATTGGCTGCTCGAAACGTTTGGGCTCTGATTG
TGTTCTTGAGGAGAGATCGGCCTGTGTATGCATACGACTACGCACCTCAT
TGCACACTTATTTCGGTATCATCACCTTGTGTTTTTTGGATTCCGTGTCT
ACCACCCGAGAGTTGTTGATCGCCCTCTGATGATGGTTGTGCGCGCGAGA
ACTCCCTCGACGGCATTCAGAGACGGATGCATCGAGGCTCAGCTGGTGTG
ATGCCATTGCATTCCACGATGCTGAGCCGCAGTGTGTGTAGGGGGGGCGG
TACGCAAGTGCGCAAGGTTTTTATGGTGGGCGTATATGCATTAGAGCGTG
CACACATGACCAGTCTTCCGTGAGAAACTCGCGCCGTGCGAAAAAGGCGA
CTCCGTGGGAACTCCGTGGCTCTATTGCTGTTCCAGCCGCAGATTTTTCG
GTTTCTATCGTGGGATAGATATAATGGAGTGAGATGGTCGAACCGCTCTA
TATCAAACCCGCTAGTACGGTCATGACGGCAGCTTTAATGTTTCTCACTT
TTTACCAGAAATGTTTGGCCAGACTGCCAACGGTTTAATTTGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15685:172..1565+

>mRNA_Ecto-sp13_S_contig15685.4201.1 ID=mRNA_Ecto-sp13_S_contig15685.4201.1|Name=mRNA_Ecto-sp13_S_contig15685.4201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15685:172..1565+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCTCTCGGAGTCCGGCAACGTATACTCCTGCGGCTCCAACGAGTTCGG
CCAGCAAGGGCGAGGCGAAGCTGGTTCCGCCGCTCAACGCTCCAGCGCCT
CCCGTAATAACGCCGATGGCTCGAGCAGGGAGACGTCAAGATCGACTCAT
CCAGTTGCGGACGGTGGCGGGGGCGGGGGCGGAGGCGGAGGCGGGGCATC
CACTAACCTATGTATGTTGGCCCCGACGATCGTCACCGTTACCGGCGGTG
GCGTATCTGGTCTCCGCGTCCAGAGGGTGGCGGCGGGGGACGACCACTGC
ACTGTGCTCACCTCCTCGGAGCCAAACACTGCCACCGCCACCGCTTCGGC
GGCGGCGGCGGCGGCGGCGGCGGTTGTCTCCGTCTCCTCCTCCGGCCGTG
GAGGCGGGGGAGCGGGGAGCTCCCAAGGCAGCAGCAGCAGGCGAGTCTTC
ACGTGGGGGCTGAACGCTGCCGGACAGTGCGCTCACGGGCGGGCGGCGGA
GGTCGTGGGGGCCCCGCAGGAAGCCGAGCTGTTGAGCGGTGCCAGGGCAG
TTGGCTGCGGGGCGGGGCATACAATGGTCGTTCTCTAG
back to top