mRNA_Ecto-sp13_S_contig15684.4200.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15684.4200.1
Unique NamemRNA_Ecto-sp13_S_contig15684.4200.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A226F027_FOLCA (Pre-mRNA-processing factor 19 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226F027_FOLCA)

HSP 1 Score: 124 bits (312), Expect = 4.020e-31
Identity = 60/123 (48.78%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFYG 366
            ++NVANF GH G + ++AFSENGYY+A+A ED   +LWDLRKL NF  + + D  +   +AFD +G+YLA  G    +V+  K W E+A Y  + G+ TGV+FG++ASF+A++S+DR+L+ YG
Sbjct:  374 QSNVANFPGHNGRIISIAFSENGYYLATAAEDACVKLWDLRKLKNFKTIEMADNYSITDLAFDQTGTYLAVSGSD-VRVYGCKLWNEIAVYNDHTGTATGVRFGQNASFIASTSLDRSLKIYG 495          
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A8J2HRE3_COTCN (Pre-mRNA-processing factor 19 n=1 Tax=Cotesia congregata TaxID=51543 RepID=A0A8J2HRE3_COTCN)

HSP 1 Score: 120 bits (300), Expect = 5.990e-30
Identity = 59/123 (47.97%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDGA-AHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFYG 366
            ++NVANF GH G + ++ FSENGYY+A++ ED   +LWDLRKL NF  L + DG     +AFD +G+YLA  G    +V+  K W EL  +  +  + TGV+FGK+A ++A++SMDRTL+ YG
Sbjct:  269 QSNVANFPGHVGEITSITFSENGYYLATSAEDSCVKLWDLRKLKNFKTLQLDDGYDVKDLAFDKTGTYLAVSGTD-VRVYLCKQWQELKVFNDHTAAATGVRFGKNAQYIASTSMDRTLKLYG 390          
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A0V0YGE8_TRIPS (Pre-mRNA-processing factor 19 n=2 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0YGE8_TRIPS)

HSP 1 Score: 116 bits (291), Expect = 3.250e-28
Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFY 363
            ++NVANF GH G V AL+FSENGYY+AS  +D   +LWDLRKL NF  +T+ D      V FD SGSYLA  G +  KVF  K W  L     +   VTGV+FGK+A FL +SS DR++R Y
Sbjct:  356 QSNVANFPGHAGAVRALSFSENGYYLASVADDSMIKLWDLRKLKNFKTITLDDSFQPQDVCFDQSGSYLAVAGTEI-KVFQSKQWVCLCDLTDHSDIVTGVRFGKNAEFLISSSFDRSIREY 476          
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A6P7GEK4_DIAVI (Pre-mRNA-processing factor 19 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7GEK4_DIAVI)

HSP 1 Score: 116 bits (290), Expect = 3.430e-28
Identity = 57/120 (47.50%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   10 VANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFYG 366
             ANF GH G +++++FSENGYY+A+A +D   +LWDLRKL NF  L + +G     + FD SG+YLA  G    +V+  K W EL  +  +  + TGV+FGK A F+A++SMDRTL+ YG
Sbjct:  331 AANFTGHSGAISSISFSENGYYLATAADDACVKLWDLRKLRNFKTLQLDEGYQIKDLCFDQSGAYLAVAGTD-VRVYLCKQWQELKVFNDHTATATGVRFGKHARFIASTSMDRTLKLYG 449          
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A6V7Y9J1_9BILA (Pre-mRNA-processing factor 19 n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7Y9J1_9BILA)

HSP 1 Score: 109 bits (272), Expect = 3.860e-28
Identity = 54/124 (43.55%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG--AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFYG 366
            ++NVA F GH   V A++FSENGYY+A+   DG  ++WDLRKL N   +   +   A +++ FD SG+YLA GG    ++F VK+W ++  + G+   VTG+ FG++A F+A+SS+D+T+R +G
Sbjct:   18 QSNVAQFPGHSDSVCAISFSENGYYLATGSLDGEVKIWDLRKLKNLKTICPYNAKQAVNALTFDQSGAYLAIGGAN-VQIFQVKSWNKIYQFDGHTQGVTGINFGENAKFVASSSLDKTVRIFG 140          
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A8C4X9I8_ERPCA (Pre-mRNA-processing factor 19 n=4 Tax=Polypteridae TaxID=8289 RepID=A0A8C4X9I8_ERPCA)

HSP 1 Score: 115 bits (287), Expect = 1.310e-27
Identity = 56/122 (45.90%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFY 363
            + NVANF GH G + ++AFSENGYY+A++ +D   +LWDLRKL NF  + + D     S+ FD SG+YLA  G    +++  K W E+  +  + G  TGV FG+ A FL +S MDR+L+FY
Sbjct:  369 RTNVANFPGHSGPITSIAFSENGYYLATSADDSSVKLWDLRKLKNFKTIQLDDNYEVKSLVFDQSGTYLAVAGSDI-RIYVCKQWSEVLNFTEHSGITTGVAFGQHAQFLTSSGMDRSLKFY 489          
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A851Y2P9_EOLRO (Pre-mRNA-processing factor 19 (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A851Y2P9_EOLRO)

HSP 1 Score: 113 bits (282), Expect = 1.450e-27
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFY 363
            + NVANF GH G + ++AFSENGYY+A+A +D   +LWDLRKL NF  L + +     S+ FD SG+YLA GG    +++  K W E+  +  + G  TGV FG  A F+A++ MDR+L+FY
Sbjct:  234 RTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLENNFEVKSLIFDQSGTYLALGGTD-VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFY 354          
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A0V0ZQ99_9BILA (Pre-mRNA-processing factor 19 n=28 Tax=Trichinella TaxID=6333 RepID=A0A0V0ZQ99_9BILA)

HSP 1 Score: 114 bits (286), Expect = 3.850e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFY 363
            ++NVANF GH G V AL+FSENGYY+AS  +D   +LWDLRKL NF  + + D      V FD SGSYLA  G +  KVF  K W  L     +   VTGV+FGK+A FL +SS DR++R Y
Sbjct:  751 QSNVANFPGHAGAVRALSFSENGYYLASVADDSMIKLWDLRKLKNFKTIALDDSFQPQDVCFDQSGSYLAVAGTEI-KVFQSKQWVCLCDLTDHSDIVTGVRFGKNAEFLISSSFDRSIREY 871          
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A433P8B5_9FUNG (Pre-mRNA-processing factor 19 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P8B5_9FUNG)

HSP 1 Score: 114 bits (284), Expect = 4.410e-27
Identity = 59/123 (47.97%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    7 NVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFYGTA 372
            N+A F GH G V ALAFSENGY +A+A +D   +LWDLR L N   LT+ D    H++ FD+   YLA GG    ++F  K W EL       G + GVK+G  A +L T  +DRTLRFYG A
Sbjct:  405 NIATFPGHTGKVGALAFSENGYMLATASQDNLVKLWDLRNLVNTKTLTLADDYKVHTLDFDYHAQYLAVGGTD-VRIFKAKQWTELVKLEDNSGEIMGVKWGDMAGYLVTGGLDRTLRFYGPA 526          
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Match: A0A4V3S7Q1_9HYME (Pre-mRNA-processing factor 19 n=1 Tax=Temnothorax longispinosus TaxID=300112 RepID=A0A4V3S7Q1_9HYME)

HSP 1 Score: 106 bits (265), Expect = 4.540e-27
Identity = 54/123 (43.90%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLTIGDG-AAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGVKFGKSASFLATSSMDRTLRFYG 366
            ++NVANF GH G + A+ F+ENGYY+A+  ED   +LWDLR+L NF  L + +     ++ FD S +YLA   +   +V+  K W EL     +  + TGV+FGK A ++A++SMDRTL+ YG
Sbjct:   20 QSNVANFPGHTGVITAINFAENGYYLATVAEDSCVKLWDLRQLKNFKTLQLEESYKVKNICFDQSETYLAVA-ETDVRVYLCKQWQELKVLNDHTAAATGVRFGKHAQYIASTSMDRTLKLYG 141          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15684.4200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A226F027_FOLCA4.020e-3148.78Pre-mRNA-processing factor 19 n=1 Tax=Folsomia can... [more]
A0A8J2HRE3_COTCN5.990e-3047.97Pre-mRNA-processing factor 19 n=1 Tax=Cotesia cong... [more]
A0A0V0YGE8_TRIPS3.250e-2852.46Pre-mRNA-processing factor 19 n=2 Tax=Trichinella ... [more]
A0A6P7GEK4_DIAVI3.430e-2847.50Pre-mRNA-processing factor 19 n=1 Tax=Diabrotica v... [more]
A0A6V7Y9J1_9BILA3.860e-2843.55Pre-mRNA-processing factor 19 n=1 Tax=Meloidogyne ... [more]
A0A8C4X9I8_ERPCA1.310e-2745.90Pre-mRNA-processing factor 19 n=4 Tax=Polypteridae... [more]
A0A851Y2P9_EOLRO1.450e-2746.72Pre-mRNA-processing factor 19 (Fragment) n=3 Tax=N... [more]
A0A0V0ZQ99_9BILA3.850e-2751.64Pre-mRNA-processing factor 19 n=28 Tax=Trichinella... [more]
A0A433P8B5_9FUNG4.410e-2747.97Pre-mRNA-processing factor 19 n=1 Tax=Endogone sp.... [more]
A0A4V3S7Q1_9HYME4.540e-2743.90Pre-mRNA-processing factor 19 n=1 Tax=Temnothorax ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15684contigEcto-sp13_S_contig15684:2995..3991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeNematoda
Stop1
Start0
Seed ortholog score116.7
Seed ortholog evalue7.8e-24
Seed eggNOG ortholog6334.EFV58577
Model size375
KEGG koko:K10599
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070534,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons3
EggNOG free text desc.Prp19/Pso4-like
EggNOG OGs38CRU@33154,3BF9F@33208,3CV5N@33213,40B21@6231,KOG0289@1,KOG0289@2759,KOG3544@1,KOG3544@2759
EC2.3.2.27
Cds size375
COG Functional cat.S
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.944119-CDS-Ecto-sp13_S_contig15684:2994..30421681462829.944119-CDS-Ecto-sp13_S_contig15684:2994..3042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15684 2995..3042 -
1681462829.9572687-CDS-Ecto-sp13_S_contig15684:3231..33271681462829.9572687-CDS-Ecto-sp13_S_contig15684:3231..3327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15684 3232..3327 -
1681462829.965645-CDS-Ecto-sp13_S_contig15684:3760..39911681462829.965645-CDS-Ecto-sp13_S_contig15684:3760..3991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15684 3761..3991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15684.4200.1prot_Ecto-sp13_S_contig15684.4200.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15684 2995..3991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15684.4200.1

>prot_Ecto-sp13_S_contig15684.4200.1 ID=prot_Ecto-sp13_S_contig15684.4200.1|Name=mRNA_Ecto-sp13_S_contig15684.4200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
KANVANFKGHEGGVNALAFSENGYYMASAGEDGYARLWDLRKLTNFDNLT
IGDGAAHSVAFDFSGSYLAAGGKKCTKVFAVKTWGELATYGGYGGSVTGV
KFGKSASFLATSSMDRTLRFYGTA*
back to top

mRNA from alignment at Ecto-sp13_S_contig15684:2995..3991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15684.4200.1 ID=mRNA_Ecto-sp13_S_contig15684.4200.1|Name=mRNA_Ecto-sp13_S_contig15684.4200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15684:2995..3991- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCCAACGTGGCCAACTTCAAGGGCCACGAGGGAGGGGTGAACGCTCT GGCCTTCAGCGAGAACGGTTACTACATGGCCTCGGCGGGTGAGGACGGCT ACGCGCGCCTGTGGGACCTCCGCAAGCTGACCAACTTCGACAACCTGACC ATCGGCGACGGCGCGGCGCACTCGGTGGCGTTCGATTTCTCGGGGTCCTA CCTCGCGGCGGGCGGGAAGAAGTGCACTAAGGTGGGGGAGGGGGGGGATT GTTGGCGCGCAATTGACGTCAAGGTGGTTAACCGCATGTTGACTAGGCAG GATGTGGGTGGCGTGCACGGTTAGAAACACGCTTGTTGTGGGGTGGGTGT TCTAGGAATGTGCGCGTTTTTCTTTGCGTGTTGTCCGATGGAAATGGATG GATGCCGACGTGATATGTATTTTCCCTCTCTCTTCATGTAGCTGTTTCTG TGTAAGGCATACGCCACACGACGTGTGGTCATATCTGATGCTTGGGTGGT TTTCCTCGGCGTACGCTTTGGCGAGCGACCCGCTCTGCAGCCATTTTGGC GCTCCGAAAGCCTAACACGCATCTATACCCAGCCAGTAGACAAATCGCAC ACCGAGTGTACTCTATTTCATATCCTAACCTCGGGCGCCGTCGTCGTGCC ATGGAACGTTGCAGGTGTTTGCGGTTAAGACCTGGGGAGAGCTTGCTACT TACGGCGGCTACGGCGGATCAGTGACGGGCGTCAAGTTCGGCAAGAGCGC GAGCTTCTTGGTAAGACAATCCGGACATCATCGTGACGTCAGTTTACCAC GCATCATCCATCTGCTGCCCCTCACTAATTGCCCTTGGACGTTGTTTTTT TCTTGTTCGAAAGGGTGTTACGAGGGGTGACTTGCAGAGTAGGTGCCAGT AGTAGTTCTCACTCTAATTTCGTTGCTGTTGTTTTCTCCTGCTCGACAGG CCACATCCTCGATGGACAGGACGCTGCGTTTCTACGGCACCGCGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15684:2995..3991-

>mRNA_Ecto-sp13_S_contig15684.4200.1 ID=mRNA_Ecto-sp13_S_contig15684.4200.1|Name=mRNA_Ecto-sp13_S_contig15684.4200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15684:2995..3991- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCCAACGTGGCCAACTTCAAGGGCCACGAGGGAGGGGTGAACGCTCT
GGCCTTCAGCGAGAACGGTTACTACATGGCCTCGGCGGGTGAGGACGGCT
ACGCGCGCCTGTGGGACCTCCGCAAGCTGACCAACTTCGACAACCTGACC
ATCGGCGACGGCGCGGCGCACTCGGTGGCGTTCGATTTCTCGGGGTCCTA
CCTCGCGGCGGGCGGGAAGAAGTGCACTAAGGTGTTTGCGGTTAAGACCT
GGGGAGAGCTTGCTACTTACGGCGGCTACGGCGGATCAGTGACGGGCGTC
AAGTTCGGCAAGAGCGCGAGCTTCTTGGCCACATCCTCGATGGACAGGAC
GCTGCGTTTCTACGGCACCGCGTAA
back to top