mRNA_Ecto-sp13_S_contig15680.4199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15680.4199.1
Unique NamemRNA_Ecto-sp13_S_contig15680.4199.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15680.4199.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.410e-19
Identity = 103/129 (79.84%), Postives = 103/129 (79.84%), Query Frame = 1 
Query:    1 SPSGVPPSRAXXXXXXXXXXXXXXXXX------------------HRMEGAGGALGASWGEDSSGPVNDMANPMVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXA----PEAGIVEVMGQEDEGAGVFG 321
            SPSGVPPSRAXXXXXXXXXXXXXXXXX                   RMEGAGGALGASWGEDSSGPVNDM NPMVGAG XXXXXXXXXXXXXXXXXXXXXXXXX     PEAGIVEVMGQEDEGAGVFG
Sbjct: 1313 SPSGVPPSRAXXXXXXXXXXXXXXXXXXXATNGFVPNXXXXXXXXRRMEGAGGALGASWGEDSSGPVNDMVNPMVGAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEAGIVEVMGQEDEGAGVFG 1441
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BLAST of mRNA_Ecto-sp13_S_contig15680.4199.1 vs. uniprot
Match: D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 9.160e-7
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:  136 SGPVNDMANPMVGAGXXXXXXXXXXXXXXXXXXXXXXXXXX---APEAGIVEVMGQEDEGAGVFG 321
            SGPVNDMANPM GA XXXXXXXXXXXXXXXXXXXXXXXXXX   APEAGIVEVMGQEDEGAGVFG
Sbjct: 1089 SGPVNDMANPMAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEAGIVEVMGQEDEGAGVFG 1153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15680.4199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL55_9PHAE3.410e-1979.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF91_ECTSI9.160e-792.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15680contigEcto-sp13_S_contig15680:2898..3220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size325
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.9055197-CDS-Ecto-sp13_S_contig15680:2897..32181681462829.9055197-CDS-Ecto-sp13_S_contig15680:2897..3218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15680 2898..3218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15680.4199.1prot_Ecto-sp13_S_contig15680.4199.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15680 2898..3218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15680.4199.1

>prot_Ecto-sp13_S_contig15680.4199.1 ID=prot_Ecto-sp13_S_contig15680.4199.1|Name=mRNA_Ecto-sp13_S_contig15680.4199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
SPSGVPPSRAAAEPPSGGGGGGGGGGGHRMEGAGGALGASWGEDSSGPVN
DMANPMVGAGKGNGRGRKTAAVGGGGSGGGVEVDVPAPEAGIVEVMGQED
EGAGVFG
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mRNA from alignment at Ecto-sp13_S_contig15680:2898..3220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15680.4199.1 ID=mRNA_Ecto-sp13_S_contig15680.4199.1|Name=mRNA_Ecto-sp13_S_contig15680.4199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=323bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15680:2898..3220+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCCGTCCGGGGTACCTCCGTCGCGCGCCGCCGCGGAACCCCCGTCCGG
CGGCGGCGGCGGCGGCGGTGGTGGCGGTGGGCATCGCATGGAAGGCGCCG
GAGGAGCTCTCGGAGCCTCGTGGGGGGAGGACAGCAGCGGCCCCGTTAAC
GACATGGCGAACCCGATGGTCGGGGCTGGGAAGGGCAACGGTAGGGGCAG
GAAGACGGCGGCGGTCGGCGGCGGCGGCAGCGGCGGCGGGGTTGAGGTTG
ACGTGCCGGCCCCAGAGGCGGGGATAGTGGAGGTGATGGGGCAGGAGGAC
GAGGGCGCGGGGGTGTTTGGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15680:2898..3220+

>mRNA_Ecto-sp13_S_contig15680.4199.1 ID=mRNA_Ecto-sp13_S_contig15680.4199.1|Name=mRNA_Ecto-sp13_S_contig15680.4199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15680:2898..3220+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCCGTCCGGGGTACCTCCGTCGCGCGCCGCCGCGGAACCCCCGTCCGG
CGGCGGCGGCGGCGGCGGTGGTGGCGGTGGGCATCGCATGGAAGGCGCCG
GAGGAGCTCTCGGAGCCTCGTGGGGGGAGGACAGCAGCGGCCCCGTTAAC
GACATGGCGAACCCGATGGTCGGGGCTGGGAAGGGCAACGGTAGGGGCAG
GAAGACGGCGGCGGTCGGCGGCGGCGGCAGCGGCGGCGGGGTTGAGGTTG
ACGTGCCGGCCCCAGAGGCGGGGATAGTGGAGGTGATGGGGCAGGAGGAC
GAGGGCGCGGGGGTGTTTGGA
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