mRNA_Ecto-sp13_S_contig15679.4197.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15679.4197.1
Unique NamemRNA_Ecto-sp13_S_contig15679.4197.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15679.4197.1 vs. uniprot
Match: D7G232_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G232_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 3.470e-79
Identity = 137/146 (93.84%), Postives = 143/146 (97.95%), Query Frame = 1 
Query:    1 MDATAESQKGASSIEDAGVAVKIEEKVGGEEDSCPIAKNAALLEELDAAEGMVAELLEVAADALDELAGVESLDSSKVEASTKKFLDLVSSVHGTLSSKAELIRDYTPYPRSIYGPRKELELLHEKARFLRTTLADLSKEQPASTA 438
            MDAT ESQKGASSIEDAGVAVK+E +VGG+EDSCPIAKNAALLEELDAAEG VAELLEVAADALDELAGVESLDSSKVEASTKKFL+LVSSVHGTLSSKAELIRDYTPYPRSIYGPRKELELLHEKARFLRTTLA+LSKEQPAS+A
Sbjct:    1 MDATTESQKGASSIEDAGVAVKMEGQVGGDEDSCPIAKNAALLEELDAAEGKVAELLEVAADALDELAGVESLDSSKVEASTKKFLELVSSVHGTLSSKAELIRDYTPYPRSIYGPRKELELLHEKARFLRTTLAELSKEQPASSA 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15679.4197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G232_ECTSI3.470e-7993.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15679contigEcto-sp13_S_contig15679:2178..3205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1028
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003640.1
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.674984-CDS-Ecto-sp13_S_contig15679:2177..26841681462829.674984-CDS-Ecto-sp13_S_contig15679:2177..2684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15679 2178..2684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.6885314-UTR-Ecto-sp13_S_contig15679:2684..32051681462829.6885314-UTR-Ecto-sp13_S_contig15679:2684..3205Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15679 2685..3205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15679.4197.1prot_Ecto-sp13_S_contig15679.4197.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15679 2178..2684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15679.4197.1

>prot_Ecto-sp13_S_contig15679.4197.1 ID=prot_Ecto-sp13_S_contig15679.4197.1|Name=mRNA_Ecto-sp13_S_contig15679.4197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MDATAESQKGASSIEDAGVAVKIEEKVGGEEDSCPIAKNAALLEELDAAE
GMVAELLEVAADALDELAGVESLDSSKVEASTKKFLDLVSSVHGTLSSKA
ELIRDYTPYPRSIYGPRKELELLHEKARFLRTTLADLSKEQPASTARKEP
PELNSPPQDGGGGAGAAV*
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mRNA from alignment at Ecto-sp13_S_contig15679:2178..3205+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15679.4197.1 ID=mRNA_Ecto-sp13_S_contig15679.4197.1|Name=mRNA_Ecto-sp13_S_contig15679.4197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1028bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15679:2178..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCCACCGCTGAGAGTCAGAAGGGCGCATCATCGATCGAGGATGC
TGGAGTGGCAGTGAAGATTGAAGAGAAAGTCGGCGGTGAAGAAGACTCTT
GCCCAATCGCGAAGAACGCGGCCCTTCTCGAGGAGCTGGACGCAGCCGAG
GGCATGGTTGCGGAGCTGTTGGAGGTTGCCGCCGACGCGCTGGACGAGCT
CGCCGGGGTGGAGTCGTTGGATAGCTCCAAGGTCGAGGCTTCAACCAAGA
AATTCTTAGATTTGGTGTCGTCCGTGCACGGCACGCTGTCATCCAAGGCG
GAGTTGATTCGAGATTACACGCCGTATCCTCGGAGTATATACGGGCCGCG
AAAGGAGCTCGAGCTTCTCCACGAAAAGGCCCGTTTCCTACGGACGACTC
TGGCCGATTTGTCGAAAGAACAGCCCGCTTCTACTGCCAGAAAAGAACCG
CCAGAGTTGAATTCCCCGCCACAGGACGGTGGGGGTGGTGCTGGTGCTGC
GGTGTGAAACATTGTGTACGTGTGTCCCATGTAATATTCGGTGCGGTGAG
CGAAGGTAGTGGGTGTTGTTGGCGGCGGTGCGGCTCGCCCCCCCCCTCCC
CTGGTAGTCCCACGGTAGTGGTGGGGCCCGACTTGGGTACGTTGCCCCGT
TGCTTGTAAACTGTTTCAGCAGGTATTAACCGCTTGCCTTGACCCTCGCT
GACAGTATTTTCTACATGACGTTTTGTTCGTTGACGTAACGTAGTCTTTT
AAGTGGATGGTGTACTCTGTACGTGGAACACCTTGACTGTTGTTGGCTTG
CGGAAGCTTCGTCTAGTTGCATGTTTTGGCTTGTGTTGCCGTTTTCGTGG
TTGGTGAACATATTGTAGTTTTCTGTCCGTGAAGATGTTTCGGTTATGTT
TAAGGAAAATTTACCATGTACCGCTGTAACCGATGGTTCATGAAGTCTTT
CTTGAAGTCCGAAGCCTCTTTTAGGCGCATGCACTCTCCCTCTCTCTCTC
TGCACCCTCGCCGATCGGCGATCACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15679:2178..3205+

>mRNA_Ecto-sp13_S_contig15679.4197.1 ID=mRNA_Ecto-sp13_S_contig15679.4197.1|Name=mRNA_Ecto-sp13_S_contig15679.4197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15679:2178..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCCACCGCTGAGAGTCAGAAGGGCGCATCATCGATCGAGGATGC
TGGAGTGGCAGTGAAGATTGAAGAGAAAGTCGGCGGTGAAGAAGACTCTT
GCCCAATCGCGAAGAACGCGGCCCTTCTCGAGGAGCTGGACGCAGCCGAG
GGCATGGTTGCGGAGCTGTTGGAGGTTGCCGCCGACGCGCTGGACGAGCT
CGCCGGGGTGGAGTCGTTGGATAGCTCCAAGGTCGAGGCTTCAACCAAGA
AATTCTTAGATTTGGTGTCGTCCGTGCACGGCACGCTGTCATCCAAGGCG
GAGTTGATTCGAGATTACACGCCGTATCCTCGGAGTATATACGGGCCGCG
AAAGGAGCTCGAGCTTCTCCACGAAAAGGCCCGTTTCCTACGGACGACTC
TGGCCGATTTGTCGAAAGAACAGCCCGCTTCTACTGCCAGAAAAGAACCG
CCAGAGTTGAATTCCCCGCCACAGGACGGTGGGGGTGGTGCTGGTGCTGC
GGTGTGA
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