mRNA_Ecto-sp13_S_contig15677.4196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15677.4196.1
Unique NamemRNA_Ecto-sp13_S_contig15677.4196.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15677.4196.1 vs. uniprot
Match: D8LFB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB9_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 6.050e-13
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 LGTLLVKPCLAYLLIVCSIWPNPGAVSSSLQVYVRWVPSHFYCRCSMLTSHPIFFR 168
            LGTLLVKP LA LL+VCSI P PGAVSSS+ VYVRWVPSH         + P+FFR
Sbjct:    5 LGTLLVKPRLACLLVVCSILPYPGAVSSSV-VYVRWVPSHIVADVHAHNT-PVFFR 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15677.4196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFB9_ECTSI6.050e-1366.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15677contigEcto-sp13_S_contig15677:3161..3331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size171
Hectar predicted targeting categorysignal peptide
Exons1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.643452-CDS-Ecto-sp13_S_contig15677:3160..33311681462829.643452-CDS-Ecto-sp13_S_contig15677:3160..3331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15677 3161..3331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15677.4196.1prot_Ecto-sp13_S_contig15677.4196.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15677 3161..3331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15677.4196.1

>prot_Ecto-sp13_S_contig15677.4196.1 ID=prot_Ecto-sp13_S_contig15677.4196.1|Name=mRNA_Ecto-sp13_S_contig15677.4196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
LGTLLVKPCLAYLLIVCSIWPNPGAVSSSLQVYVRWVPSHFYCRCSMLTS
HPIFFR*
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mRNA from alignment at Ecto-sp13_S_contig15677:3161..3331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15677.4196.1 ID=mRNA_Ecto-sp13_S_contig15677.4196.1|Name=mRNA_Ecto-sp13_S_contig15677.4196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15677:3161..3331+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGGAACTCTGCTGGTGAAACCCTGCTTGGCCTACCTACTTATCGTTTG
CTCGATCTGGCCGAACCCTGGTGCTGTATCATCTTCACTACAAGTCTATG
TACGCTGGGTGCCATCTCATTTTTATTGCAGATGTTCCATGCTCACATCA
CACCCGATTTTTTTCCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15677:3161..3331+

>mRNA_Ecto-sp13_S_contig15677.4196.1 ID=mRNA_Ecto-sp13_S_contig15677.4196.1|Name=mRNA_Ecto-sp13_S_contig15677.4196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15677:3161..3331+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGGAACTCTGCTGGTGAAACCCTGCTTGGCCTACCTACTTATCGTTTG
CTCGATCTGGCCGAACCCTGGTGCTGTATCATCTTCACTACAAGTCTATG
TACGCTGGGTGCCATCTCATTTTTATTGCAGATGTTCCATGCTCACATCA
CACCCGATTTTTTTCCGTTGA
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