mRNA_Ecto-sp13_S_contig15670.4194.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15670.4194.1
Unique NamemRNA_Ecto-sp13_S_contig15670.4194.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A6H5KLS4_9PHAE (Cofac_haem_bdg domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLS4_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 2.310e-66
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1
Query:    1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLRRAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
            GAGIDAAAMNRMYEAQTLWDEYMAESASRYL+RAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI
Sbjct:  274 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLQRAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 375          
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A836CAW1_9STRA (Cofac_haem_bdg domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW1_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.510e-43
Identity = 68/100 (68.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query:   10 IDAAAMNRMYEAQTLWDEYMAESASRYLRRAGGRIVLLAGNGHVQARDGIPDRVERRTG-LKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
            +   A+ RMY+AQTLWDEYM+ESA+ YL   GGR+VLLAG+ H+++RDGIPDRV RR G  +PFT+VP+SV+WT+DGLPDIDHPPG +FADWVYFTQ E+
Sbjct:  302 VSGDALARMYQAQTLWDEYMSESAANYLSSRGGRMVLLAGSRHIESRDGIPDRVHRRLGGAEPFTVVPLSVDWTQDGLPDIDHPPGPSFADWVYFTQKEL 401          
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A6S9I595_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I595_HETAK)

HSP 1 Score: 127 bits (318), Expect = 4.800e-33
Identity = 63/109 (57.80%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLRRAGG----RIVLLAGNGHVQARDGIPDRVERRTG---LKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
            G  +    + RMYEAQTLWDEYMAES  RYLR  GG    R+V+LAG  HV+ARDGIPDRV RR G      FT+VP  V+W  DGLP +  PPG AF DWVY+T+ +I
Sbjct:  255 GRTMSEGRLARMYEAQTLWDEYMAESVDRYLRGPGGASAGRLVVLAGVNHVEARDGIPDRVTRRAGGGAAPAFTVVPQDVDWGADGLPAVAAPPGPAFGDWVYYTEKQI 363          
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A7S1EUR9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUR9_9RHOD)

HSP 1 Score: 110 bits (276), Expect = 9.040e-27
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   31 RMYEAQTLWDEYMAESASRYLR-RAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
            + Y+   LWDEYMAESASRYL     G + +LAG  H++ R GIPDR+ +RTG+K FT++P SV WT D LP ID P G   ADW+++TQ EI
Sbjct:  313 KYYQTVALWDEYMAESASRYLHSEPEGVLTVLAGAAHIEGRTGIPDRITKRTGIKSFTVLPQSVNWTVDLLPAIDQPKGRDTADWLWYTQREI 405          
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A7J7IDX8_9RHOD (Cofac_haem_bdg domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IDX8_9RHOD)

HSP 1 Score: 106 bits (264), Expect = 6.920e-25
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 GAGI-DAAAMNRMYEAQTLWDEYMAESASRYLRR-AGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
            GA I D +A+ RMYE+Q LWDEYM+ESA+ +L+R   G + + AGNGHV+ R G+PDR+ RR+G   FT+VP +V + +DG PDI HP      DW+++  + +
Sbjct:  309 GAAILDESALQRMYESQVLWDEYMSESAALWLQRNPNGYLCVFAGNGHVEGRVGLPDRLTRRSGRPTFTVVPYTVPFQQDGWPDIPHPGNRDAGDWLWYLPSTL 412          
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: M1USZ6_CYAM1 (Cofac_haem_bdg domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1USZ6_CYAM1)

HSP 1 Score: 106 bits (264), Expect = 8.120e-25
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   13 DAAAMNRMYEAQTLWDEYMAESASRYLRR-AGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYF 291
            D AA+ RMYE+Q LWDEYM+ESA+ +L R   G + + AGNGHV+ R GIPDR+ RR+G   FT+VP +V +  DG PDI HP      DW+++
Sbjct:  313 DEAALQRMYESQVLWDEYMSESAALWLERNPRGHLCIFAGNGHVEGRVGIPDRLTRRSGRPTFTVVPYTVPFQSDGWPDIPHPGNRDVGDWLWY 406          
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A1X6PAT6_PORUM (Cofac_haem_bdg domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAT6_PORUM)

HSP 1 Score: 103 bits (257), Expect = 3.290e-24
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLRRAGG-RIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTE---DGLPDIDHP-PGTAFADWVYFTQNEI 306
            G   D   +   YEA+TLWDEYMAESA+  L      R+V+LAG  HV+ARDG+P+RVERR G + FT++P SV W       +PDID P  G   ADW++++  EI
Sbjct:  265 GGRFDLQVLRHYYEAETLWDEYMAESAAEVLAADPAVRLVVLAGTAHVEARDGLPERVERRVGGRAFTVLPTSVRWASAAGTSVPDIDAPLGGGGLADWIWYSPREI 371          
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A7S2WE22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WE22_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.580e-24
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   34 MYEAQTLWDEYMAESASRYLRRAGG--RIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
            MY+ Q LW+EY+AES S YL   G   R+V L G  H+  RDG+PDRV RR    PFT+VP+SV+WT +G P ID P    F+DW++ T +E+
Sbjct:  341 MYQCQVLWEEYLAESVSMYLSSKGAADRLVCLTGLNHIIDRDGVPDRVMRRLRTNPFTVVPLSVDWTRNGTPLIDQPLEPKFSDWIWLTPSEL 433          
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: W7U433_9STRA (Cofac_haem_bdg domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U433_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.000e-19
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLRR-AGGRIVLLAGNGHVQARDGIPDRVERRTGLKP-FTIVPVSVEWTE-DGLPDIDHPPG--TAFADWVYFTQ 297
            G GI   A+ R+YEAQTLWDEYMAESA+  L      R+++LAG  H+Q R G+PDR+ RR G +P FTI+PVSV++     LP I       T   DWVYF +
Sbjct:  282 GGGIPEEALERLYEAQTLWDEYMAESAAHILEADPRSRMIVLAGTNHIQNRYGVPDRIMRRLGGQPVFTILPVSVKFDAVTSLPMIGDGESYDTRLGDWVYFIE 385          
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: R7QEG1_CHOCR (Cofac_haem_bdg domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEG1_CHOCR)

HSP 1 Score: 90.9 bits (224), Expect = 1.460e-19
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLR-RAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTED---GLPDIDHPPGTAFADWVYFTQNEI 306
            GA  D A ++R YEAQ LW+E+M++S +  L+ R G R+V L G+GHV+ R G P+R+ERR+  +P+T+VP  V WT +    +P+I  P     AD V++T+ +I
Sbjct:  249 GANPDQALLDRYYEAQVLWEEWMSQSVAMSLKDRPGTRMVALIGSGHVEGRYGFPNRIERRSAERPYTVVPRPVAWTSNEGHSMPNISRPE-VDIADLVWYTRRKI 353          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLS4_9PHAE2.310e-6699.02Cofac_haem_bdg domain-containing protein n=2 Tax=E... [more]
A0A836CAW1_9STRA2.510e-4368.00Cofac_haem_bdg domain-containing protein n=1 Tax=T... [more]
A0A6S9I595_HETAK4.800e-3357.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1EUR9_9RHOD9.040e-2754.84Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7J7IDX8_9RHOD6.920e-2548.08Cofac_haem_bdg domain-containing protein n=1 Tax=C... [more]
M1USZ6_CYAM18.120e-2552.13Cofac_haem_bdg domain-containing protein n=2 Tax=c... [more]
A0A1X6PAT6_PORUM3.290e-2448.60Cofac_haem_bdg domain-containing protein n=1 Tax=P... [more]
A0A7S2WE22_9STRA4.580e-2450.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U433_9STRA1.000e-1950.00Cofac_haem_bdg domain-containing protein n=2 Tax=M... [more]
R7QEG1_CHOCR1.460e-1943.40Cofac_haem_bdg domain-containing protein n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15670contigEcto-sp13_S_contig15670:3520..4100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score64.7
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog522772.Dacet_2256
Preferred namephuW
Model size306
KEGG rclassRC00096,RC00141
KEGG koko:K01256,ko:K04771
KEGG ReactionR00899,R04951
KEGG Pathwayko00480,ko01100,ko01503,ko02020,map00480,map01100,map01503,map02020
KEGG ModuleM00728
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Peptidase family M1 domain
EggNOG OGs2GFIT@200930,COG0265@1,COG0265@2,COG0308@1,COG0308@2,COG3016@1,COG3016@2
EC3.4.11.2,3.4.21.107
Cds size282
COG Functional cat.EO
BiGG ReactioniAF987.Gmet_0348
Best tax levelDeferribacteres
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.5313866-CDS-Ecto-sp13_S_contig15670:3519..37391681462829.5313866-CDS-Ecto-sp13_S_contig15670:3519..3739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15670 3520..3739 -
1681462829.5423026-CDS-Ecto-sp13_S_contig15670:4014..40761681462829.5423026-CDS-Ecto-sp13_S_contig15670:4014..4076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15670 4015..4076 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.5506847-UTR-Ecto-sp13_S_contig15670:4076..41001681462829.5506847-UTR-Ecto-sp13_S_contig15670:4076..4100Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15670 4077..4100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15670.4194.1prot_Ecto-sp13_S_contig15670.4194.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15670 3520..4076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15670.4194.1

>prot_Ecto-sp13_S_contig15670.4194.1 ID=prot_Ecto-sp13_S_contig15670.4194.1|Name=mRNA_Ecto-sp13_S_contig15670.4194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
MNRMYEAQTLWDEYMAESASRYLRRAGGRIVLLAGNGHVQARDGIPDRVE
RRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI
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mRNA from alignment at Ecto-sp13_S_contig15670:3520..4100-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15670.4194.1 ID=mRNA_Ecto-sp13_S_contig15670.4194.1|Name=mRNA_Ecto-sp13_S_contig15670.4194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=581bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15670:3520..4100- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCAGGGATTGACGCAGCTGCCATGAACCGCATGTACGAAGCCCAGAC GCTGTGGGACGAGTACATGGCGGAATCGGCCAGCCGGTGAGAGAAGAGAT ACGGTGTTTCGGGAAGGAGAGCCTTAAACACAAAGTCGATGAAGGGAATG AGATCACGTTCAGGGTATAAAGCTCGAACTGCTTTTTCTCCTTTGTTCGA CCCCCTCAGGAAACATTGAAGATTAACCTCCTCCGAACACGAATACGGTG TGCTCCGGTTGTCGTAACATGAGCGTGCACAACAGTACCCAAGCAATGCC AAATGTTGTACCCGTACCACCCCCCTCCCCCCCCTGGTTTACACGCCACC CGATTTCGAAGGTACCTGCGGCGAGCGGGGGGGCGGATAGTACTCTTGGC CGGAAACGGGCACGTTCAAGCGCGCGACGGTATCCCGGACCGAGTAGAAC GCCGCACCGGATTGAAACCCTTCACCATCGTGCCCGTCTCCGTCGAATGG ACGGAGGATGGGCTGCCGGACATCGACCACCCCCCGGGAACCGCCTTCGC CGACTGGGTGTACTTCACGCAGAACGAAATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15670:3520..4100-

>mRNA_Ecto-sp13_S_contig15670.4194.1 ID=mRNA_Ecto-sp13_S_contig15670.4194.1|Name=mRNA_Ecto-sp13_S_contig15670.4194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15670:3520..4100- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGCATGTACGAAGCCCAGACGCTGTGGGACGAGTACATGGCGGA
ATCGGCCAGCCGGTACCTGCGGCGAGCGGGGGGGCGGATAGTACTCTTGG
CCGGAAACGGGCACGTTCAAGCGCGCGACGGTATCCCGGACCGAGTAGAA
CGCCGCACCGGATTGAAACCCTTCACCATCGTGCCCGTCTCCGTCGAATG
GACGGAGGATGGGCTGCCGGACATCGACCACCCCCCGGGAACCGCCTTCG
CCGACTGGGTGTACTTCACGCAGAACGAAATC
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