mRNA_Ecto-sp13_S_contig15670.4194.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A6H5KLS4_9PHAE (Cofac_haem_bdg domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLS4_9PHAE) HSP 1 Score: 213 bits (542), Expect = 2.310e-66 Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1
Query: 1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLRRAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
GAGIDAAAMNRMYEAQTLWDEYMAESASRYL+RAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI
Sbjct: 274 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLQRAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 375
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A836CAW1_9STRA (Cofac_haem_bdg domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW1_9STRA) HSP 1 Score: 154 bits (389), Expect = 2.510e-43 Identity = 68/100 (68.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query: 10 IDAAAMNRMYEAQTLWDEYMAESASRYLRRAGGRIVLLAGNGHVQARDGIPDRVERRTG-LKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
+ A+ RMY+AQTLWDEYM+ESA+ YL GGR+VLLAG+ H+++RDGIPDRV RR G +PFT+VP+SV+WT+DGLPDIDHPPG +FADWVYFTQ E+
Sbjct: 302 VSGDALARMYQAQTLWDEYMSESAANYLSSRGGRMVLLAGSRHIESRDGIPDRVHRRLGGAEPFTVVPLSVDWTQDGLPDIDHPPGPSFADWVYFTQKEL 401
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A6S9I595_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I595_HETAK) HSP 1 Score: 127 bits (318), Expect = 4.800e-33 Identity = 63/109 (57.80%), Postives = 74/109 (67.89%), Query Frame = 1
Query: 1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLRRAGG----RIVLLAGNGHVQARDGIPDRVERRTG---LKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
G + + RMYEAQTLWDEYMAES RYLR GG R+V+LAG HV+ARDGIPDRV RR G FT+VP V+W DGLP + PPG AF DWVY+T+ +I
Sbjct: 255 GRTMSEGRLARMYEAQTLWDEYMAESVDRYLRGPGGASAGRLVVLAGVNHVEARDGIPDRVTRRAGGGAAPAFTVVPQDVDWGADGLPAVAAPPGPAFGDWVYYTEKQI 363
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A7S1EUR9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUR9_9RHOD) HSP 1 Score: 110 bits (276), Expect = 9.040e-27 Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 31 RMYEAQTLWDEYMAESASRYLR-RAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
+ Y+ LWDEYMAESASRYL G + +LAG H++ R GIPDR+ +RTG+K FT++P SV WT D LP ID P G ADW+++TQ EI
Sbjct: 313 KYYQTVALWDEYMAESASRYLHSEPEGVLTVLAGAAHIEGRTGIPDRITKRTGIKSFTVLPQSVNWTVDLLPAIDQPKGRDTADWLWYTQREI 405
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A7J7IDX8_9RHOD (Cofac_haem_bdg domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IDX8_9RHOD) HSP 1 Score: 106 bits (264), Expect = 6.920e-25 Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 1
Query: 1 GAGI-DAAAMNRMYEAQTLWDEYMAESASRYLRR-AGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
GA I D +A+ RMYE+Q LWDEYM+ESA+ +L+R G + + AGNGHV+ R G+PDR+ RR+G FT+VP +V + +DG PDI HP DW+++ + +
Sbjct: 309 GAAILDESALQRMYESQVLWDEYMSESAALWLQRNPNGYLCVFAGNGHVEGRVGLPDRLTRRSGRPTFTVVPYTVPFQQDGWPDIPHPGNRDAGDWLWYLPSTL 412
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: M1USZ6_CYAM1 (Cofac_haem_bdg domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1USZ6_CYAM1) HSP 1 Score: 106 bits (264), Expect = 8.120e-25 Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 1
Query: 13 DAAAMNRMYEAQTLWDEYMAESASRYLRR-AGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYF 291
D AA+ RMYE+Q LWDEYM+ESA+ +L R G + + AGNGHV+ R GIPDR+ RR+G FT+VP +V + DG PDI HP DW+++
Sbjct: 313 DEAALQRMYESQVLWDEYMSESAALWLERNPRGHLCIFAGNGHVEGRVGIPDRLTRRSGRPTFTVVPYTVPFQSDGWPDIPHPGNRDVGDWLWY 406
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A1X6PAT6_PORUM (Cofac_haem_bdg domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAT6_PORUM) HSP 1 Score: 103 bits (257), Expect = 3.290e-24 Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLRRAGG-RIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTE---DGLPDIDHP-PGTAFADWVYFTQNEI 306
G D + YEA+TLWDEYMAESA+ L R+V+LAG HV+ARDG+P+RVERR G + FT++P SV W +PDID P G ADW++++ EI
Sbjct: 265 GGRFDLQVLRHYYEAETLWDEYMAESAAEVLAADPAVRLVVLAGTAHVEARDGLPERVERRVGGRAFTVLPTSVRWASAAGTSVPDIDAPLGGGGLADWIWYSPREI 371
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: A0A7S2WE22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WE22_9STRA) HSP 1 Score: 103 bits (258), Expect = 4.580e-24 Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 34 MYEAQTLWDEYMAESASRYLRRAGG--RIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTEDGLPDIDHPPGTAFADWVYFTQNEI 306
MY+ Q LW+EY+AES S YL G R+V L G H+ RDG+PDRV RR PFT+VP+SV+WT +G P ID P F+DW++ T +E+
Sbjct: 341 MYQCQVLWEEYLAESVSMYLSSKGAADRLVCLTGLNHIIDRDGVPDRVMRRLRTNPFTVVPLSVDWTRNGTPLIDQPLEPKFSDWIWLTPSEL 433
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: W7U433_9STRA (Cofac_haem_bdg domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U433_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.000e-19 Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLRR-AGGRIVLLAGNGHVQARDGIPDRVERRTGLKP-FTIVPVSVEWTE-DGLPDIDHPPG--TAFADWVYFTQ 297
G GI A+ R+YEAQTLWDEYMAESA+ L R+++LAG H+Q R G+PDR+ RR G +P FTI+PVSV++ LP I T DWVYF +
Sbjct: 282 GGGIPEEALERLYEAQTLWDEYMAESAAHILEADPRSRMIVLAGTNHIQNRYGVPDRIMRRLGGQPVFTILPVSVKFDAVTSLPMIGDGESYDTRLGDWVYFIE 385
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Match: R7QEG1_CHOCR (Cofac_haem_bdg domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEG1_CHOCR) HSP 1 Score: 90.9 bits (224), Expect = 1.460e-19 Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 1 GAGIDAAAMNRMYEAQTLWDEYMAESASRYLR-RAGGRIVLLAGNGHVQARDGIPDRVERRTGLKPFTIVPVSVEWTED---GLPDIDHPPGTAFADWVYFTQNEI 306
GA D A ++R YEAQ LW+E+M++S + L+ R G R+V L G+GHV+ R G P+R+ERR+ +P+T+VP V WT + +P+I P AD V++T+ +I
Sbjct: 249 GANPDQALLDRYYEAQVLWEEWMSQSVAMSLKDRPGTRMVALIGSGHVEGRYGFPNRIERRSAERPYTVVPRPVAWTSNEGHSMPNISRPE-VDIADLVWYTRRKI 353 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15670.4194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15670.4194.1 >prot_Ecto-sp13_S_contig15670.4194.1 ID=prot_Ecto-sp13_S_contig15670.4194.1|Name=mRNA_Ecto-sp13_S_contig15670.4194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp MNRMYEAQTLWDEYMAESASRYLRRAGGRIVLLAGNGHVQARDGIPDRVEback to top mRNA from alignment at Ecto-sp13_S_contig15670:3520..4100- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15670.4194.1 ID=mRNA_Ecto-sp13_S_contig15670.4194.1|Name=mRNA_Ecto-sp13_S_contig15670.4194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=581bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15670:3520..4100- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15670:3520..4100- >mRNA_Ecto-sp13_S_contig15670.4194.1 ID=mRNA_Ecto-sp13_S_contig15670.4194.1|Name=mRNA_Ecto-sp13_S_contig15670.4194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15670:3520..4100- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |