prot_Ecto-sp13_S_contig15668.4192.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig15668.4192.1
Unique Nameprot_Ecto-sp13_S_contig15668.4192.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length172
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15668.4192.1 vs. uniprot
Match: D7FMF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF2_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.100e-59
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0 
Query:    1 WNLLVVDVRGAVCGLFGAALFQAFKLALKTTSWVWVKDSNEMMRKRVVKYFGSSTRMVRDVVTYALPLVAFFHTFLEWAFRGVVTVGLAETTSLSTAAVALVSAVVLG 108
            WNLLVVDVRGAVCGLFGAAL QAFKLAL+TTSW WVK SNEMMRK+VVKYFGSSTR VRDVVTYALPLVAFFHTFLEW FRGVVTVGLAETTSLSTAA+ALVSAVV G
Sbjct:  127 WNLLVVDVRGAVCGLFGAALLQAFKLALRTTSWGWVKGSNEMMRKQVVKYFGSSTRTVRDVVTYALPLVAFFHTFLEWGFRGVVTVGLAETTSLSTAAIALVSAVVFG 234
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15668.4192.1 vs. uniprot
Match: D8LIG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 8.440e-17
Identity = 59/159 (37.11%), Postives = 83/159 (52.20%), Query Frame = 0 
Query:    4 LVVDVRGAVCGLFGAALFQAFKLALKTT-SWVWVKDSNEMMRKRVVKYFGSSTRMVRDVVTYALPLVAFFHTFLEWAFRGVVTVGLAETTSLSTAAVALVSAVVLGAFLCFSPTSFICFTWVSVFMQSLLLLTGNIFVPIVAHTVQNVVEIVQIHVKAT 161
            L V + GA  G+ G+    A+ L L+T   W WV+ +     + V+K FGS  R V  V   ++PL        E  FRG++ + LA  TSL TAA+ ++S +  G     S   F+  T   +F   LLL TGNIFVP+VAH V N   +V  H+K +
Sbjct:  168 LSVTLHGACVGILGSLPLFAYGLFLETRRDWGWVRKAQATTERAVLKLFGSK-RQVTKVAAVSIPLSMLVSASEECGFRGLLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNIFVPMVAHAVHNAFALVHCHIKTS 325
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15668.4192.1 vs. uniprot
Match: A0A6H5JG43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG43_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.580e-5
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 0 
Query:   77 EWAFRGVVTVGLAETTSLSTAAVALVSAVVLGAFLCFSPTSFICFTWVSVFMQSLLLLTGNIFVPIVAHTVQNVVEIVQIHVKAT 161
            E  FRG + + LA  TSL TAA+ ++S +  G     S   F+  T   +F   LLL TGNI VP+VAH V N   +V  H+K +
Sbjct:    8 ECGFRGFLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNILVPMVAHAVHNAFALVHCHLKTS 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15668.4192.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF2_ECTSI1.100e-5991.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIG3_ECTSI8.440e-1737.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG43_9PHAE2.580e-541.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 37..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 81..91
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 114..119
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 120..144
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 145..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..113
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..80
NoneNo IPR availableTMHMMTMhelixcoord: 121..143
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 95..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15668contigEcto-sp13_S_contig15668:6..2353 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15668.4192.1mRNA_Ecto-sp13_S_contig15668.4192.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig15668 6..2353 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig15668.4192.1 ID=prot_Ecto-sp13_S_contig15668.4192.1|Name=mRNA_Ecto-sp13_S_contig15668.4192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
WNLLVVDVRGAVCGLFGAALFQAFKLALKTTSWVWVKDSNEMMRKRVVKY
FGSSTRMVRDVVTYALPLVAFFHTFLEWAFRGVVTVGLAETTSLSTAAVA
LVSAVVLGAFLCFSPTSFICFTWVSVFMQSLLLLTGNIFVPIVAHTVQNV
VEIVQIHVKATRPPQRVVLDD*
back to top