mRNA_Ecto-sp13_S_contig15668.4192.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15668.4192.1
Unique NamemRNA_Ecto-sp13_S_contig15668.4192.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15668.4192.1 vs. uniprot
Match: D7FMF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF2_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.100e-59
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    1 WNLLVVDVRGAVCGLFGAALFQAFKLALKTTSWVWVKDSNEMMRKRVVKYFGSSTRMVRDVVTYALPLVAFFHTFLEWAFRGVVTVGLAETTSLSTAAVALVSAVVLG 324
            WNLLVVDVRGAVCGLFGAAL QAFKLAL+TTSW WVK SNEMMRK+VVKYFGSSTR VRDVVTYALPLVAFFHTFLEW FRGVVTVGLAETTSLSTAA+ALVSAVV G
Sbjct:  127 WNLLVVDVRGAVCGLFGAALLQAFKLALRTTSWGWVKGSNEMMRKQVVKYFGSSTRTVRDVVTYALPLVAFFHTFLEWGFRGVVTVGLAETTSLSTAAIALVSAVVFG 234
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BLAST of mRNA_Ecto-sp13_S_contig15668.4192.1 vs. uniprot
Match: D8LIG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 8.440e-17
Identity = 59/159 (37.11%), Postives = 83/159 (52.20%), Query Frame = 1 
Query:   10 LVVDVRGAVCGLFGAALFQAFKLALKTT-SWVWVKDSNEMMRKRVVKYFGSSTRMVRDVVTYALPLVAFFHTFLEWAFRGVVTVGLAETTSLSTAAVALVSAVVLGAFLCFSPTSFICFTWVSVFMQSLLLLTGNIFVPIVAHTVQNVVEIVQIHVKAT 483
            L V + GA  G+ G+    A+ L L+T   W WV+ +     + V+K FGS  R V  V   ++PL        E  FRG++ + LA  TSL TAA+ ++S +  G     S   F+  T   +F   LLL TGNIFVP+VAH V N   +V  H+K +
Sbjct:  168 LSVTLHGACVGILGSLPLFAYGLFLETRRDWGWVRKAQATTERAVLKLFGSK-RQVTKVAAVSIPLSMLVSASEECGFRGLLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNIFVPMVAHAVHNAFALVHCHIKTS 325
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BLAST of mRNA_Ecto-sp13_S_contig15668.4192.1 vs. uniprot
Match: A0A6H5JG43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG43_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.580e-5
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:  229 EWAFRGVVTVGLAETTSLSTAAVALVSAVVLGAFLCFSPTSFICFTWVSVFMQSLLLLTGNIFVPIVAHTVQNVVEIVQIHVKAT 483
            E  FRG + + LA  TSL TAA+ ++S +  G     S   F+  T   +F   LLL TGNI VP+VAH V N   +V  H+K +
Sbjct:    8 ECGFRGFLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNILVPMVAHAVHNAFALVHCHLKTS 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15668.4192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF2_ECTSI1.100e-5991.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIG3_ECTSI8.440e-1737.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG43_9PHAE2.580e-541.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15668contigEcto-sp13_S_contig15668:6..2353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size516
Hectar predicted targeting categorysignal peptide
Exons4
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.4163616-CDS-Ecto-sp13_S_contig15668:5..1761681462829.4163616-CDS-Ecto-sp13_S_contig15668:5..176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15668 6..176 +
1681462829.4259543-CDS-Ecto-sp13_S_contig15668:1034..11871681462829.4259543-CDS-Ecto-sp13_S_contig15668:1034..1187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15668 1035..1187 +
1681462829.4354672-CDS-Ecto-sp13_S_contig15668:1940..20931681462829.4354672-CDS-Ecto-sp13_S_contig15668:1940..2093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15668 1941..2093 +
1681462829.4436405-CDS-Ecto-sp13_S_contig15668:2314..23531681462829.4436405-CDS-Ecto-sp13_S_contig15668:2314..2353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15668 2315..2353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15668.4192.1prot_Ecto-sp13_S_contig15668.4192.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15668 6..2353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15668.4192.1

>prot_Ecto-sp13_S_contig15668.4192.1 ID=prot_Ecto-sp13_S_contig15668.4192.1|Name=mRNA_Ecto-sp13_S_contig15668.4192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
WNLLVVDVRGAVCGLFGAALFQAFKLALKTTSWVWVKDSNEMMRKRVVKY
FGSSTRMVRDVVTYALPLVAFFHTFLEWAFRGVVTVGLAETTSLSTAAVA
LVSAVVLGAFLCFSPTSFICFTWVSVFMQSLLLLTGNIFVPIVAHTVQNV
VEIVQIHVKATRPPQRVVLDD*
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mRNA from alignment at Ecto-sp13_S_contig15668:6..2353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15668.4192.1 ID=mRNA_Ecto-sp13_S_contig15668.4192.1|Name=mRNA_Ecto-sp13_S_contig15668.4192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15668:6..2353+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAATTTGCTCGTGGTGGATGTCCGGGGAGCTGTTTGCGGGCTCTTTGG
GGCGGCATTGTTCCAGGCGTTTAAGCTTGCCCTCAAAACAACAAGCTGGG
TGTGGGTGAAGGACTCCAACGAGATGATGAGGAAACGGGTCGTTAAGTAC
TTCGGCAGCTCGACCAGAATGGTGGGTACGAAGCACGAACACGCGCAGCA
GCCTTGCGCAACCAGCAACCGGAAACAAGGAACCGAAAGCTTGGCGGAGT
TTCTATTCTGTTGTGTCGACGGAAGTTCTTGCCCAGCCTATCAGCACCTT
ATGGCAAGACCCCGAAAAGACGTCAGGGTGGATTTTTGTTTTCCCACACT
CTCTCCTCTTCGATCGATTTCGAGTTGACCACATGAAATGCGCAGGACGC
TCCGAGATATTCGGGGCTCGCACGAACGCAGCGGGCAGCATTGACGTCAC
CGTCAAGTCTCGCCGGCCGCGGCTGTGTGCGTTGAACGATGCCGTTCCGA
AGACAGCGCAATCGTGCGGTCGCCTAGCAGAGATATGTCGGTAGGTTGCG
GCGTGTTTGCCCATTTGGCGGCTTGCGCTCGTACGGGTGGGCGATCCATG
TTTTGGTAGGGAACCTCAAGCGGGTGTGTGCCAGAGACAACATGTTGCTG
ATTGCGGAATCTGTTCGTCTTGGCTAGCAGTATCGGTGGTTGCTGCTTGC
TTGCCTATGTGCCTCATGCTCAAGTAATCTATCGCCTAGAAGCACCCGTC
ATGATCAGCGTCCCGTGTCGGGCTCAATGCATACGTGCGGGACAGTTGCT
GTTGTTTGACATGACACTGCTTGCATCTCGCATTTACGACGATGTGTTCA
TCCAATCTGTGGCCGAGACGTTGGAAAGCAGCCAAAACAGAGAAATCCGA
CACATGGACGCCAGTACGTACTGCGAAGAGCCATCCGTTAGACAGGTTGA
CCATCGCGCGTGCTGTTTCCGATTCGTGTACCATGCACACTCCCGCCGAC
TGTTGATCGAAAATGACTTCTTGCGGCAGGTACGCGACGTGGTCACTTAC
GCTCTTCCCTTGGTAGCGTTCTTCCACACCTTCCTTGAGTGGGCGTTTCG
AGGAGTGGTCACCGTCGGACTGGCTGAGACGACTAGCTTGTCCACGGCCG
CCGTTGCCCTTGTATCGGCAGTCGTGCTCGGGGTGAGACGTTTTGAAGTT
CATCTTGACGATGTCACTGCTACGTGGATGGTTGAGGCTTGTACGTTCTC
TTCGCCTTCCCGCTTTTCCGGTGGAGGTGCAAGTACTGGTGTTGGACGTG
TACACCCTTTCGGATCGCGAGTGAAGTCTGGAAGTTGTGCCGTTGAGTGG
TGCTTCACTATCCTCCGCTACCGGGTGTATACATGTTGTGGGTCGTGTAA
AACTAACATGTATTGGCAGAATTTCTGTATGTTCCGCTTTCGTTTGTTGA
GAAGAATGCAGCAAGTAGATTTGAGTGTGCCATGGACACCACGGGTGGTC
ACGTTCGTCTCTGTTTGGGAAGCTCTTCTTGGTGTTTCCTCTTCGAAAAG
CGGGTCTTGGCTCTTATGGTGGTGGAAGGCGAGGCAGGGGAAACGGCATG
ATGGGTCCTCTTCGGTAATGCTCCGCCTGGAAAGTGCTTCCGGCACGAAA
ATCTCTTGTGCGTTTAAAAGTGTCGACTGGTGTCAGGATCATTCGAATGG
CTTCAGGATATTTACTCTTTGACCGAAGTCTCCTTGAGGCAGGTGGTGGT
AAGCTCGGCTAGCGGCATGCGTGTGTTCCAATGAAAGCTCAGAACAAGGA
AAACATCCTCGTCGTATTCAAGCCCCCTACCCTTGCCCGTTTCGTTCTGC
CTCGTTGTGGTGCTTGTTGGCCGACCTCAATCGCGGGAAAACGTGTTGCG
GTACACAAACACGCTCCGATGCGGCGAGGGTACAGGCGTTCCTGTGTTTC
TCACCGACCTCCTTCATCTGTTTCACCTGGGTCAGCGTTTTCATGCAATC
CCTGCTGCTGCTCACTGGCAACATCTTCGTTCCTATCGTGGCGCACACAG
TCCAAAATGTGGTCGAGATCGTCCAAATTCATGTCAAGGTACGTCAAACT
CCCCTCGTTATTGCATATTACAGTCTCTGGTGTGCATATGATACAAGTAG
GGCTTGCGGGCTACAACTCGCTCTCAGCATTGTTCGCGCTCGCGCCTTCG
AACAATGTCCATCCTCGCTCACCCCTCTTGCTGTCCGTTCGATCTGTGCC
CTTTCACGTGCGCAACGCCCCGCCTCCTCCTACGTGCGCTTCGTGTCTTG
TCGTTGCAGGCAACTCGGCCACCGCAGCGCGTGGTGCTCGACGACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15668:6..2353+

>mRNA_Ecto-sp13_S_contig15668.4192.1 ID=mRNA_Ecto-sp13_S_contig15668.4192.1|Name=mRNA_Ecto-sp13_S_contig15668.4192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15668:6..2353+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGAATTTGCTCGTGGTGGATGTCCGGGGAGCTGTTTGCGGGCTCTTTGG
GGCGGCATTGTTCCAGGCGTTTAAGCTTGCCCTCAAAACAACAAGCTGGG
TGTGGGTGAAGGACTCCAACGAGATGATGAGGAAACGGGTCGTTAAGTAC
TTCGGCAGCTCGACCAGAATGGTACGCGACGTGGTCACTTACGCTCTTCC
CTTGGTAGCGTTCTTCCACACCTTCCTTGAGTGGGCGTTTCGAGGAGTGG
TCACCGTCGGACTGGCTGAGACGACTAGCTTGTCCACGGCCGCCGTTGCC
CTTGTATCGGCAGTCGTGCTCGGGGCGTTCCTGTGTTTCTCACCGACCTC
CTTCATCTGTTTCACCTGGGTCAGCGTTTTCATGCAATCCCTGCTGCTGC
TCACTGGCAACATCTTCGTTCCTATCGTGGCGCACACAGTCCAAAATGTG
GTCGAGATCGTCCAAATTCATGTCAAGGCAACTCGGCCACCGCAGCGCGT
GGTGCTCGACGACTAG
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