mRNA_Ecto-sp13_S_contig1566.4189.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1566.4189.1
Unique NamemRNA_Ecto-sp13_S_contig1566.4189.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1566.4189.1 vs. uniprot
Match: A0A6H5KJZ9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ9_9PHAE)

HSP 1 Score: 365 bits (938), Expect = 1.050e-120
Identity = 255/295 (86.44%), Postives = 260/295 (88.14%), Query Frame = 1 
Query:    1 MVGLGRPADGLRLTNNSSGTGGGPGYNSFGAPXXXXXXXXXXLFSADKSDSDIGVAERSNDGDGVDGGRRDRGSASGGGGRQAIVTAGLFVWAAVASLAAALLATSRAGDLDASGDKGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--GPKVNGNSDNGKSNSWCLPNAAHQSFSGVVLKEDDGVMPQGEWEGEHWWYHDEITNGFHMAVTIGGDTYGFWDLGIIGAAGNTEYVAAYKGDRCLFYEEKVQPGSTPFDEDVTCRGSAWAGNVTLK 879
            MVGLGRPADGLRLTN+SSGT            XXXXXXX   LF ADKSDSDI V ERS+DGD +DGGRRDRGSASGG  RQAIVTAGLFVWAA ASLAAALLATSR GD+DASGDKGTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G  VNGNSD     SWCLPNAAHQSF GVVLKEDDGVMPQGEWEGEHWWYHDEITNGFHMAVTIGGDTYGFWDLGIIGAAGNTEYVAAYKGDRCLFYEEKVQPGSTPFDEDVTCRGSAWAG+VTLK
Sbjct:    1 MVGLGRPADGLRLTNSSSGTXXXXXXXXXXXXXXXXXXXGEGLFPADKSDSDISVVERSSDGDCIDGGRRDRGSASGGRERQAIVTAGLFVWAAAASLAAALLATSR-GDIDASGDKGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSNVNGNSD-----SWCLPNAAHQSFLGVVLKEDDGVMPQGEWEGEHWWYHDEITNGFHMAVTIGGDTYGFWDLGIIGAAGNTEYVAAYKGDRCLFYEEKVQPGSTPFDEDVTCRGSAWAGSVTLK 289
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1566.4189.1 vs. uniprot
Match: D8LI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI79_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 9.590e-59
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:  613 MPQGEWEGEHWWYHDEITNGFHMAVTIGGDTYGFWDLGIIGAAGNTEYVAAYKGDRCLFYEEKVQPGSTPFDEDVTCRGSAWAGNVTLK 879
            MPQGEWEGEHWWYHDEITNGFHMAVTIGGDTYGFWDLGIIGAAGNTEYVAAYKGDRCLFYEEKVQPGSTPFDEDVTCRGSAWAGNVTLK
Sbjct:    1 MPQGEWEGEHWWYHDEITNGFHMAVTIGGDTYGFWDLGIIGAAGNTEYVAAYKGDRCLFYEEKVQPGSTPFDEDVTCRGSAWAGNVTLK 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1566.4189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJZ9_9PHAE1.050e-12086.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LI79_ECTSI9.590e-59100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1566contigEcto-sp13_S_contig1566:109..2400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size879
Hectar predicted targeting categoryother localisation
Exons4
Cds size879
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.2199066-CDS-Ecto-sp13_S_contig1566:108..2451681462829.2199066-CDS-Ecto-sp13_S_contig1566:108..245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1566 109..245 -
1681462829.2309916-CDS-Ecto-sp13_S_contig1566:597..6951681462829.2309916-CDS-Ecto-sp13_S_contig1566:597..695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1566 598..695 -
1681462829.240597-CDS-Ecto-sp13_S_contig1566:971..12931681462829.240597-CDS-Ecto-sp13_S_contig1566:971..1293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1566 972..1293 -
1681462829.2499526-CDS-Ecto-sp13_S_contig1566:2078..24001681462829.2499526-CDS-Ecto-sp13_S_contig1566:2078..2400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1566 2079..2400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1566.4189.1prot_Ecto-sp13_S_contig1566.4189.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1566 109..2400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1566.4189.1

>prot_Ecto-sp13_S_contig1566.4189.1 ID=prot_Ecto-sp13_S_contig1566.4189.1|Name=mRNA_Ecto-sp13_S_contig1566.4189.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MVGLGRPADGLRLTNNSSGTGGGPGYNSFGAPPPPPAPEGEGLFSADKSD
SDIGVAERSNDGDGVDGGRRDRGSASGGGGRQAIVTAGLFVWAAVASLAA
ALLATSRAGDLDASGDKGTAAAAAATTTTQPTTRTSSPGSFATRTTASNT
ASAAGGGGGGGGGGGSSGPKVNGNSDNGKSNSWCLPNAAHQSFSGVVLKE
DDGVMPQGEWEGEHWWYHDEITNGFHMAVTIGGDTYGFWDLGIIGAAGNT
EYVAAYKGDRCLFYEEKVQPGSTPFDEDVTCRGSAWAGNVTLK
back to top

mRNA from alignment at Ecto-sp13_S_contig1566:109..2400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1566.4189.1 ID=mRNA_Ecto-sp13_S_contig1566.4189.1|Name=mRNA_Ecto-sp13_S_contig1566.4189.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2292bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1566:109..2400- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGGCTAGGCCGGCCAGCGGACGGTCTCCGCCTGACTAACAACAG
CAGCGGCACGGGCGGGGGCCCCGGGTACAACTCTTTTGGCGCCCCTCCCC
CCCCGCCAGCACCGGAGGGGGAGGGACTCTTCTCAGCAGACAAGAGCGAT
AGCGATATAGGCGTCGCCGAAAGAAGCAACGATGGGGATGGCGTTGATGG
CGGTAGGAGGGATCGTGGGAGCGCTAGCGGGGGAGGAGGGCGGCAAGCGA
TCGTCACGGCGGGCTTATTTGTGTGGGCGGCAGTGGCGTCCTTGGCGGCG
GCATTGCTGGCGACCAGCCGAGGTACAGCAGTGGGCTTTGCAGGTTTTCG
TCGTGCCTTGGTTGGTCGTTGTTGTGGGGTGGAATGGTGCGGGGCTGCGA
GGGGGCACAGATGTAGTGTTGGGGGAGGAGGGGTCTAAGGCGTGGTACGG
GGCCCCTAGACCGCAGCAGCACCATTTTCTGTGCAGAGGTTGGGGAACGG
AGACGTTCTGCACGCCCCATCCCCTTTGTCCTTGCCAAACTGTGCATTGT
ATCCGCTGCCTGTTAGTAGTTTGTTCCTGGTGCTGTGGTGTTTTGCGCAA
CGGAATGCGTTTCGCTCAACACGACCGTCTATTGACACGGCGACGGTGGT
GAAATATCTTCCCTTTTCTTGTGGTGTCGCTGATGACGAACACGCGCACA
GCAGTTGTATACGACAGAATGGGTGCTTTGGCGTGGGCAAAAGCTTGAGG
CATCTTCGACAAGGGAGTCGCGCCCGGTCCACACACGGAAGAACTCTCCC
GTTCCCCGGCCGTTTCTTTTTTTTTGAATATGGGGCGGCAATATTGTGGG
TCCCGTTGTTGTGTACTGCAGCATCCTTCACGTCTTGCTATGTAGCCATG
CGGAGAGACGTACTTAGTACACGTCATGCGTAAATGTGTGATGAAGGTAC
GCTCCAGCATGTCGTTCTTCGCGACGGACGCTCTCTTTGACTCTTTTTGG
CACAAAGATCAGACGCGCCGAAAGCCGGTCGAACGGCTGCTGCTGTTTCG
GAAGAAACCAGAAGCGGGATGTAAACACACCAATCGCAAAACAACGCGCT
TGCCAAGCAGGGGATCTCGATGCCAGCGGCGACAAGGGGACAGCAGCAGC
GGCAGCAGCAACGACAACTACGCAACCAACAACGCGAACGTCGTCCCCGG
GTTCATTTGCCACCAGGACGACGGCTAGCAACACCGCCTCCGCCGCCGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGATCCTCGGGGCCTAAGGTGAA
CGGCAACAGCGACAACGGCAAGAGCAACAGCTGGTGCCTCCCGAACGCGG
CGCACCAAAGTTTCTCGGGCGTGGTTCTCAAGGAGGACGACGGCGTCATG
CCGCAGGGGGAATGGGAGGGGGAGCACTGGTGAGGGAAGGAAGCACGGAG
CAAATCATTTTTCGTTTTGAAGGGCGGGAGAGGGTCTAGTCGTGGGGGGG
CTCAGCAGATTCAAGGATGGTAGGCGCTCGTTCTTGTTGCTCTCGTCAGC
AAACATGTTTGAGTTTCGTTTCGAAGGCGGGGGGGGAGGCGGGGGAGCTC
AGCAGATTCATGGCTGGCCATCTCTCGATCTTATTTTGCCCTCTATGACT
GCTATCTTGTCTCGTTGGGTACGTCTTGCTTTTTTTTTCTTTTTTTTTTG
TCCAGGTGGTACCACGACGAGATCACAAACGGGTTCCACATGGCGGTCAC
CATCGGAGGGGACACGTACGGCTTCTGGGACCTCGGCATCATCGGCGCGG
CGGGTGAGACGCTTTTTATTTATTTATTTTCTTCCTTTCTTTGTTGCTCT
TGTTCTTGTTCCTGTCTTTTCTTTGTTGTACCCTTGTGAGTGAAAAGAGG
GCTCGACGTGTGACTCCGAGAGATGAATGGACACCCCACTTTATCCTTTA
TCCTGGCTTTGTGAGGCACGATGGTCCGTCCATGACCTGAGAACTGGTGT
GACCCTGACACGAAACCCTTGTTCCATATCATTGAAAACCCCCCTCCCCC
GCTCCCCCCAGAGTTTCCTCCCCACACTCACCCCTGCGCCCAACTCCCTG
TTTTGCCGCACCGCACTATCCATTCCACCGGGCCGCTCTATTCTCCTTTA
CGCAGGCAACACGGAGTACGTGGCGGCGTACAAGGGGGACAGGTGCCTGT
TCTACGAGGAGAAGGTGCAGCCCGGATCGACGCCGTTCGACGAGGACGTC
ACCTGCCGAGGGTCGGCGTGGGCCGGCAACGTGACCCTCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1566:109..2400-

>mRNA_Ecto-sp13_S_contig1566.4189.1 ID=mRNA_Ecto-sp13_S_contig1566.4189.1|Name=mRNA_Ecto-sp13_S_contig1566.4189.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1566:109..2400- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGGCTAGGCCGGCCAGCGGACGGTCTCCGCCTGACTAACAACAG
CAGCGGCACGGGCGGGGGCCCCGGGTACAACTCTTTTGGCGCCCCTCCCC
CCCCGCCAGCACCGGAGGGGGAGGGACTCTTCTCAGCAGACAAGAGCGAT
AGCGATATAGGCGTCGCCGAAAGAAGCAACGATGGGGATGGCGTTGATGG
CGGTAGGAGGGATCGTGGGAGCGCTAGCGGGGGAGGAGGGCGGCAAGCGA
TCGTCACGGCGGGCTTATTTGTGTGGGCGGCAGTGGCGTCCTTGGCGGCG
GCATTGCTGGCGACCAGCCGAGCAGGGGATCTCGATGCCAGCGGCGACAA
GGGGACAGCAGCAGCGGCAGCAGCAACGACAACTACGCAACCAACAACGC
GAACGTCGTCCCCGGGTTCATTTGCCACCAGGACGACGGCTAGCAACACC
GCCTCCGCCGCCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATCCTC
GGGGCCTAAGGTGAACGGCAACAGCGACAACGGCAAGAGCAACAGCTGGT
GCCTCCCGAACGCGGCGCACCAAAGTTTCTCGGGCGTGGTTCTCAAGGAG
GACGACGGCGTCATGCCGCAGGGGGAATGGGAGGGGGAGCACTGGTGGTA
CCACGACGAGATCACAAACGGGTTCCACATGGCGGTCACCATCGGAGGGG
ACACGTACGGCTTCTGGGACCTCGGCATCATCGGCGCGGCGGGCAACACG
GAGTACGTGGCGGCGTACAAGGGGGACAGGTGCCTGTTCTACGAGGAGAA
GGTGCAGCCCGGATCGACGCCGTTCGACGAGGACGTCACCTGCCGAGGGT
CGGCGTGGGCCGGCAACGTGACCCTCAAG
back to top