mRNA_Ecto-sp13_S_contig15656.4188.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15656.4188.1
Unique NamemRNA_Ecto-sp13_S_contig15656.4188.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: D7G973_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G973_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.140e-23
Identity = 55/67 (82.09%), Postives = 56/67 (83.58%), Query Frame = 3 
Query:  189 AASVEEREGGRPEHVEGAVCQRKLDACSTKRSPRAPLPLRHHRLDGKTKRPG---CRRHMISTEVGR 380
            AA VEE+EGGRPEHVEGAVCQRKLDACSTK SPRAPLPLRHHRLDGK K      CRR MISTE GR
Sbjct:   99 AACVEEKEGGRPEHVEGAVCQRKLDACSTKGSPRAPLPLRHHRLDGKEKAGASCMCRRDMISTEAGR 165
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: D7G963_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G963_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.130e-18
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   58 QCTWYGLSHPVQFAVLILMPALLYGVNRLFDSLEKASHARLCP 186
            +CTWYGL HPVQF VLILMPALLYGVNRLFD LEKASHARLCP
Sbjct:   17 KCTWYGLPHPVQFMVLILMPALLYGVNRLFDRLEKASHARLCP 59
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: A0A6H5J7H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.640e-15
Identity = 55/127 (43.31%), Postives = 61/127 (48.03%), Query Frame = 1 
Query:   52 GVQCTWYGLSHPVQFAVLIL---------MPALLYGVNRLFDSLEKASHARLCPPPLPWKREKAGVPNTSKAQYVNGSWTLALPREVHARLCPYVTTAWMEKLKG---RGVEGT*YQRKLGASSRKG 396
            G +CTWYGL HPVQFAVLIL         MPALLYGVNRLFD+LEKASH  LC                                       PY T A+M+  +G     VEGT  QRKL A + KG
Sbjct:   15 GFKCTWYGLPHPVQFAVLILALRSARAPQMPALLYGVNRLFDTLEKASHNYLC---------------------------------------PYTTAAYMDAREGGRPEYVEGTLCQRKLVACANKG 102
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: D7G956_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.120e-12
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   52 GVQCTWYGLSHPVQFAVLILMPALLYGVNRLFDSLEKASHARLCPPPLPWKREKAGV 222
            G +C WY LSHPVQFAVL++MPAL  GVNR+F  L+KA++ARL      W  EK  V
Sbjct:   20 GFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRAVSAWMNEKRQV 76
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: D7FU60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.080e-10
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   52 GVQCTWYGLSHPVQFAVLILMPALLYGVNRLFDSLEKASHARLCPPPLPWKREKAGV 222
            G +C WY L HPVQFAVL++MPAL +G+NR+F  L+KA++ARL      W  EK  V
Sbjct:  162 GFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQV 218
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: A0A6H5KYN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.180e-9
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   52 GVQCTWYGLSHPVQFAVLILMPALLYGVNRLFDSLEKASHARLCPPPLPWKREK 213
            G +C WY L HPVQFAVL++MPAL +G+N +F  L+K ++ARL      W  EK
Sbjct:   71 GFKCIWYDLPHPVQFAVLLMMPALFFGINWIFGKLDKVAYARLSRAVTAWMDEK 124
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: A0A6H5J6F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6F6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.250e-9
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   52 GVQCTWYGLSHPVQFAVLILMPALLYGVNRLFDSLEKASHARLCPPPLPWKREK 213
            G++C WY LSHP Q+AVLI+    LYGVNRLFD L+ A +ARL      W +++
Sbjct:   25 GLKCAWYSLSHPAQYAVLIMTLGCLYGVNRLFDKLDSAMNARLSCATRNWMQQR 78
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: D7G972_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G972_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 5.340e-9
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   52 GVQCTWYGLSHPVQFAVLILMPALLYGVNRLFDSLEKASHARLCPPPLPWKREK 213
            G++C WY LSHP Q+A L++    LYGVNRLFD L+ A +ARL      W +++
Sbjct:   21 GLKCAWYNLSHPAQYAALVMTLGCLYGVNRLFDRLDSAMYARLSCATRNWMQQR 74
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: A0A6H5JJ82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-5
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   52 GVQCTWYGLSHPVQFAVLILMPALLYGVNRLFDSLEKASHARL 180
            G +C W  L H +QFA+L+LM  +LYGVNRLFD  ++A + RL
Sbjct:   83 GFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRL 125
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BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Match: A0A6H5L1U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U9_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.750e-5
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   52 GVQCTWYGLSHPVQFAVLILMPALLYGVNRLFDSLEKASHARL 180
            G++C WY L+HP QFA+L+LM  L+  VNRLF+  +K  + RL
Sbjct:  165 GLKCAWYNLTHPAQFAILLLMVGLVSFVNRLFNEADKVMYTRL 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15656.4188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G973_ECTSI2.140e-2382.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G963_ECTSI5.130e-1890.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5J7H2_9PHAE3.640e-1543.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G956_ECTSI2.120e-1257.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU60_ECTSI1.080e-1054.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYN8_9PHAE1.180e-951.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6F6_9PHAE1.250e-951.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G972_ECTSI5.340e-948.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ82_9PHAE1.210e-553.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1U9_9PHAE3.750e-551.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15656contigEcto-sp13_S_contig15656:1901..3881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1521
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_003710.1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.1383247-UTR-Ecto-sp13_S_contig15656:1900..19321681462829.1383247-UTR-Ecto-sp13_S_contig15656:1900..1932Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15656 1901..1932 +
1681462829.148634-UTR-Ecto-sp13_S_contig15656:2133..21601681462829.148634-UTR-Ecto-sp13_S_contig15656:2133..2160Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15656 2134..2160 +
1681462829.1906717-UTR-Ecto-sp13_S_contig15656:2743..38811681462829.1906717-UTR-Ecto-sp13_S_contig15656:2743..3881Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15656 2744..3881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.1649418-CDS-Ecto-sp13_S_contig15656:2160..22121681462829.1649418-CDS-Ecto-sp13_S_contig15656:2160..2212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15656 2161..2212 +
1681462829.179866-CDS-Ecto-sp13_S_contig15656:2471..27431681462829.179866-CDS-Ecto-sp13_S_contig15656:2471..2743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15656 2472..2743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15656.4188.1prot_Ecto-sp13_S_contig15656.4188.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15656 2161..2743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15656.4188.1

>prot_Ecto-sp13_S_contig15656.4188.1 ID=prot_Ecto-sp13_S_contig15656.4188.1|Name=mRNA_Ecto-sp13_S_contig15656.4188.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MHVVRAVAPCPVRGVDSDAGAPLRGKPALRQPRKGFARSPLPPAASVEER
EGGRPEHVEGAVCQRKLDACSTKRSPRAPLPLRHHRLDGKTKRPGCRRHM
ISTEVGR*
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mRNA from alignment at Ecto-sp13_S_contig15656:1901..3881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15656.4188.1 ID=mRNA_Ecto-sp13_S_contig15656.4188.1|Name=mRNA_Ecto-sp13_S_contig15656.4188.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1981bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15656:1901..3881+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGCTGAACATGGTCCTAGTGGAAAGCAACGGTGAGTGTGACGTACCTG
TCACGATACCTGTTGGGGTATCGTACCACAAGTAGCACGCCTTCTACGGC
GAGTACAAGCCCCTGGTGGGTGTCTTGTGTCTCGTATCTGGGCCGCCGTA
CATGGATGAATGTTGCCTGTCCACCCCACAGACGGCGTTGTTTGCTGTTG
GCGGCGTTTGCCATGTTATTGTGTGCCTTCCAGGGCTCCTTGAGTTACCG
TCGGGGTTCAATGCACGTGGTACGGGCTGTCGCACCCTGTCCAGTTCGCG
GTGTTGATTCTGGTGAGTACGCTCTGAGCTGTCTCCATGCTCTTCGCCAT
GCTTTGTGTTGCAGCTCTGTTTCCGTTGAGAACAACACTTCGTTGTTGTT
AGCGATATCGTCGTCTTCCGTGCTTGTTTCTGCCTCTGCGGGTACTTGGT
AGAAGACCTAGCGGCGAAAGGGCTGTTCTTGTTGGAGTCGAACGCGATCA
AACTGTGTGTGAAGAAGAATCGAGCCGTTTTTGAAGCCAGCGGGCCTTGC
GCTTCGTCTGGTGCCGCACAGATGCCGGCGCTCCTTTACGGGGTAAACCG
GCTCTTCGACAGCCTCGAAAAGGCTTCGCACGCTCGCCTCTGCCCCCCGC
CGCTTCCGTGGAAGAGAGAGAAGGCGGGCGTCCCGAACACGTCGAAGGCG
CAGTATGTCAACGGAAGCTGGACGCTTGCTCTACCAAGAGAAGTCCACGC
GCGCCTCTGCCCCTACGTCACCACCGCCTGGATGGAAAAACTAAAAGGCC
GGGGTGTCGAAGGCACATGATATCAACGGAAGTTGGGCGCTAGCTCCAGG
AAGGGGCTCCAAGAGTTCTCATCGACAGCAGTTGTGCACTGCTGTGTTGG
GGGTGAAGCATTCCCTGTCATTCGTCCACGGGATGGGCTAGAACGTGCAC
GATGGTCAATGTCTCGGGTTCGCGGAGCATGTCGATGGCACATCAATGCA
GCAGCTGCGTACATAGAGAGGTTGTAGCGCGGTGTTCTTCGTTAACGGCT
CCAAGGGAGAGCTTTCGTGCGAGTCTCGGTGTCCATTTTACGCCATACCC
GATCCGTTTCAGGGTGTCAAAAGGGAGGTTGAAACGCACAATCAAATCAC
ATGTATAGACTAGAGTAGATTAGACTACGTAGAGTACAGTAATTCCAACA
TTTTCCGGTGTCACAACGTTCTTTCATTCCATTGTCCAAAGGGGTGTTTT
TTTAAGGAAAATTTGCCAACATAGCCAGGTCAGGCGCTCGCGTTAATTTG
GGTTTGCTGGAAGGACCTACCATTTTTCCATCAGGTAATTCGGTGTGGAA
CTAAATTTGAATAGTTCTAGATTCTGATTTAAGTAACAACCATCAAGTGA
TCCGGGCGCCCGTCCCTCTTGTGCACACAGTTCTGCTTGGCGTCAAAAAA
CATGTCATCTTGTGCTCACCTATAAGACACGTTCGCTCCAGCACATAGAA
GATGCTTACCCTCGTCGTTTTTTGCAATCAGATTAGGGTCATGCTTGCCG
TTTGTGGCGCGCGTGAACGCTTTGGTGGTGATGCAAGGCACGCGCTTGGG
ATCGTTGTCGTCGTAGCGATTGTCGTTACACTCCTGCAGTATCGACACGT
GGGAACGGGGACGTGTTGTTGAGATCAGCGACTTGGGATCCGAGCGAATG
CACACGTCAAGGTGTTGATTCGTAAGTCCCCTACTTGCGGCATATATCGT
TTCGTTTTCTTTGTTTTGGTTTGGGGGGCAATATTCCATTAGAAGCACGA
TTAGAGGGAATGTATACAAGTAGCGCGTATAGATGTATCGATGCATACGT
GATTTGTTGAGGTTGATGTTAGAGGAGATTTGTGATGTGGAAAATACCTG
TTGACCTGTGTGTTTTTCGCGCTTTTCGCGTCGACGAAAAACGGTTGGTT
GGTTGTTTCAGGGAAAGGAAAAAAAGCACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15656:1901..3881+

>mRNA_Ecto-sp13_S_contig15656.4188.1 ID=mRNA_Ecto-sp13_S_contig15656.4188.1|Name=mRNA_Ecto-sp13_S_contig15656.4188.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15656:1901..3881+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGTGGTACGGGCTGTCGCACCCTGTCCAGTTCGCGGTGTTGATTC
TGATGCCGGCGCTCCTTTACGGGGTAAACCGGCTCTTCGACAGCCTCGAA
AAGGCTTCGCACGCTCGCCTCTGCCCCCCGCCGCTTCCGTGGAAGAGAGA
GAAGGCGGGCGTCCCGAACACGTCGAAGGCGCAGTATGTCAACGGAAGCT
GGACGCTTGCTCTACCAAGAGAAGTCCACGCGCGCCTCTGCCCCTACGTC
ACCACCGCCTGGATGGAAAAACTAAAAGGCCGGGGTGTCGAAGGCACATG
ATATCAACGGAAGTTGGGCGCTAG
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