mRNA_Ecto-sp13_S_contig15655.4187.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15655.4187.1
Unique NamemRNA_Ecto-sp13_S_contig15655.4187.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.690e-47
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    1 VVTEALAGTRGRGDTTTEDERLGKELIDSEK---------------DMRENAITADYVSAALRKAGAVKLDCSEPSLKRLTHVQHICRRITATLAPGTDNDCSDGGVRRDDA 291
            VVTEALAGTRGRGDTTTEDERLG+EL+DSEK               D+RENAITADYVSAALRKAGAVKL+CSEPSLKRLTHVQHICRRITATLAPGTDNDCS+GG  RDDA
Sbjct:  612 VVTEALAGTRGRGDTTTEDERLGEELMDSEKFRGGGGGLRVVLALVDVRENAITADYVSAALRKAGAVKLNCSEPSLKRLTHVQHICRRITATLAPGTDNDCSEGGFCRDDA 723          
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: A0A6H5JV35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.150e-16
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1
Query:   97 MRENAITADYVSAALRKAGAVKLDCSEPSLKRLTHVQHICR 219
            MRENAITADYVSAALRKAGAV LDCSEPSLKRLTHVQHICR
Sbjct:    1 MRENAITADYVSAALRKAGAVTLDCSEPSLKRLTHVQHICR 41          
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: A0A2A5E5E4_9BACT (Isochorismate synthase MenF n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5E5E4_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.350e-13
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   10 EALAGTRGRGDTTTEDERLGKELIDSEKDMRENAITADYVSAALRKAGAVKLDCSEPSLKRLTHVQHICRRITATLAPGTDN 255
            EALAGTR RG T+ ED+ LG+EL+ SEKD+RE+    D ++A  R+  +     S P L +L  +QH+  RIT  L  GTD+
Sbjct:  281 EALAGTRPRGTTSEEDDSLGRELLQSEKDLREHRFVVDRIAAQFREQCSSCHHTSHPELLKLRRIQHLLTRITGDLNAGTDD 362          
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: A0A2R6HNT3_9EURY (Isochorismate synthase n=1 Tax=Halobacteriales archaeon QS_4_62_28 TaxID=1919173 RepID=A0A2R6HNT3_9EURY)

HSP 1 Score: 73.2 bits (178), Expect = 4.680e-13
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 VVTEALAGTRGRGDTTTEDERLGKELIDSEKDMRENAITADYVSAALRKAGAVKLDCSEPSLKRLTHVQHICRRITATLAPGT 249
            V TEALAGT  RG+T TED  L  E++  EK   EN+I AD ++ ALR   A  +  ++P++KR+T++QH+ R ITAT+  GT
Sbjct:  266 VETEALAGTTDRGETITEDTNLADEMLGDEKYQVENSIVADTIADALRPV-AEDVTVADPTIKRITNLQHLHRPITATVDDGT 347          
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: A0A5Q0UPW0_9EURY (Menaquinone-specific isochorismate synthase n=7 Tax=Halomicrobium TaxID=203135 RepID=A0A5Q0UPW0_9EURY)

HSP 1 Score: 66.6 bits (161), Expect = 9.510e-11
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 VVTEALAGTRGRGDTTTEDERLGKELIDSEKDMRENAITADYVSAALRKAGAVKLDCSEPSLKRLTHVQHICRRITATL 237
            V TEALAGT  RG+T  ED  L   ++  EK   EN I AD ++ ALR   A  +  +EPS+KR+T++QH+ R ITAT+
Sbjct:  267 VQTEALAGTTDRGETAAEDTDLADAMLGDEKYQVENRIVADTIADALRPV-ADDVTVAEPSIKRITNLQHLHRPITATV 344          
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.930e-10
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 VVTEALAGTRGRGDTTTEDERLGKELIDSEKDMRENAITADYVSAALRK-AGAVKLDCSEPSLKRLTHVQHICRRITATL 237
            + TEALAGTR RG T  EDE L  EL+ S KD  EN +TA+ +  ALR      +++     + RL HVQHIC +IT  L
Sbjct:  324 ISTEALAGTRPRGQTPEEDEALAAELMASHKDRFENRVTAESIEDALRPLVQGGRVERFPAFVLRLQHVQHICHKITGRL 403          
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: A0A524QTE3_9BACT (Isochorismate synthase MenF n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A524QTE3_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.160e-9
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   10 EALAGTRGRGDTTTEDERLGKELIDSEKDMRENAITADYVSAALRKAGAVKLDCSE--PSLKRLTHVQHICRRITATL 237
            +A+AGTR RGD+  ED+R+G+EL+ SEKD RE+    D ++ AL     V +  ++  P+L +L  VQH+  RI  TL
Sbjct:  285 DAIAGTRPRGDSEHEDQRMGEELLSSEKDRREHRFVVDSITEALSAKCDVTIHPADDPPTLLKLERVQHLYTRIECTL 362          
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: UPI001912A790 (isochorismate synthase n=1 Tax=Thiorhodovibrio winogradskyi TaxID=77007 RepID=UPI001912A790)

HSP 1 Score: 63.5 bits (153), Expect = 1.160e-9
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   10 EALAGTRGRGDTTTEDERLGKELIDSEKDMRENAITADYVSAALRKAGAVKLDCSEPSLKRLTHVQHICRRITATLAPGTD 252
            +A+AGT GR D   +D  LGKEL+ SEK++RE+    D +S AL  +       ++P L RL + QH+   ITA + P TD
Sbjct:  286 DAIAGTIGRSDCADQDLALGKELLRSEKNLREHGFVVDAISQALEPSCRAIHVPAQPDLMRLRNAQHLWSPITAEIDPDTD 366          
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: A0A6P0U8D1_9CYAN (Isochorismate synthase (Fragment) n=1 Tax=Okeania sp. SIO3C4 TaxID=2607786 RepID=A0A6P0U8D1_9CYAN)

HSP 1 Score: 62.4 bits (150), Expect = 2.270e-9
Identity = 31/80 (38.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 VVTEALAGTRGRGDTTTEDERLGKELIDSEKDMRENAITADYVSAALRKAGAVKLDCSEPSLKRLTHVQHICRRITATLA 240
            ++T+ALAG+  RG T+T+D +L K L+ SEKD+RE+    D++   L+  G      S+P L +L+++QH+   ITA ++
Sbjct:  119 LITDALAGSAPRGKTSTQDIKLAKNLLSSEKDLREHQFVIDFIIKHLQDLGLNPHYPSQPHLLQLSNIQHLWTPITAEIS 198          
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Match: A0A7J9ZXE5_9ACTN (Isochorismate synthase n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A7J9ZXE5_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 5.410e-9
Identity = 37/83 (44.58%), Postives = 45/83 (54.22%), Query Frame = 1
Query:    1 VVTEALAGTRGRGDTTTEDERLGKELIDSEKDMRENAITADYVSAALRKAGAVKLDCSEPSLKRLTHVQHICRRITATLAPGT 249
            V +  LAG+R RG T  EDE+LG EL+ S KD  E+   AD V  AL    A      EP L  L +VQH+   +   LAPGT
Sbjct:  233 VTSLVLAGSRARGATCAEDEKLGGELLGSAKDQEEHRYAADSVRDALAPLCASIDVQDEPELLALANVQHLATPVRGELAPGT 315          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15655.4187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF2_ECTSI2.690e-4780.36Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A6H5JV35_9PHAE1.150e-1697.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2A5E5E4_9BACT1.350e-1346.34Isochorismate synthase MenF n=1 Tax=Candidatus Hyd... [more]
A0A2R6HNT3_9EURY4.680e-1348.19Isochorismate synthase n=1 Tax=Halobacteriales arc... [more]
A0A5Q0UPW0_9EURY9.510e-1148.10Menaquinone-specific isochorismate synthase n=7 Ta... [more]
A0A4D9D2W1_9STRA1.930e-1047.50MR_MLE domain-containing protein n=6 Tax=Monodopsi... [more]
A0A524QTE3_9BACT1.160e-943.59Isochorismate synthase MenF n=1 Tax=candidate divi... [more]
UPI001912A7901.160e-941.98isochorismate synthase n=1 Tax=Thiorhodovibrio win... [more]
A0A6P0U8D1_9CYAN2.270e-938.75Isochorismate synthase (Fragment) n=1 Tax=Okeania ... [more]
A0A7J9ZXE5_9ACTN5.410e-944.58Isochorismate synthase n=1 Tax=Streptosporangiales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15655contigEcto-sp13_S_contig15655:2423..3621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score171.4
Seed ortholog evalue2.1e-40
Seed eggNOG ortholog2880.D8LMF2
Model size292
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
Cds size291
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462829.0796454-CDS-Ecto-sp13_S_contig15655:2423..24961681462829.0796454-CDS-Ecto-sp13_S_contig15655:2423..2496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15655 2424..2496 -
1681462829.0931864-CDS-Ecto-sp13_S_contig15655:2768..28931681462829.0931864-CDS-Ecto-sp13_S_contig15655:2768..2893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15655 2769..2893 -
1681462829.1052537-CDS-Ecto-sp13_S_contig15655:3528..36211681462829.1052537-CDS-Ecto-sp13_S_contig15655:3528..3621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15655 3529..3621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15655.4187.1prot_Ecto-sp13_S_contig15655.4187.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15655 2424..3621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15655.4187.1

>prot_Ecto-sp13_S_contig15655.4187.1 ID=prot_Ecto-sp13_S_contig15655.4187.1|Name=mRNA_Ecto-sp13_S_contig15655.4187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
VVTEALAGTRGRGDTTTEDERLGKELIDSEKDMRENAITADYVSAALRKA
GAVKLDCSEPSLKRLTHVQHICRRITATLAPGTDNDCSDGGVRRDDA
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mRNA from alignment at Ecto-sp13_S_contig15655:2423..3621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15655.4187.1 ID=mRNA_Ecto-sp13_S_contig15655.4187.1|Name=mRNA_Ecto-sp13_S_contig15655.4187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1199bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15655:2423..3621- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGTGACGGAGGCGTTGGCGGGTACGAGGGGGAGGGGGGACACGACAAC CGAGGACGAGCGCCTGGGCAAGGAACTCATAGACAGCGAGAAGGTTCGTG AAGGGGGGGGGGGAGGGATGTGTGGTGTTGGAGTTGGTTGTGAGCGGTTG AGCGAGAGAGAGGGAGGGGTCGAATGCAGGGAGTGGTGCGAGCGGCGGTG GCGGTGTTTGTGATCGATTAAGACAGACAGACAGACAGACAGGCAGACAG ACAGGCAGGCAGACAGACAGAGACAGAGGTCCAGTGCAGAGAGTGGCATG AGTGGCGGTGGAGGTGCATGTGAGTGGTTGGGAGAGAGAGAAAGAGAGAG AGGCACAGAGAGACAGAGGGAGAGAGCGAGGGAGAGAGAGGGAGAGAGAG GGAGGCAAAGCTCCAGTGCAGAGAAAGCGCTGCGCTACACGTTGTTGCAC AAATATGAGTATTCGGAATCGGTTGCTTCAAATAAGCAAGCGGGACGATG CATCGAGCGGGGGAGGGCGACGCTGTCTCGACTACTGCTGCTGTTCCTCT TGGAGTTATTCTCCGGAGTGCATGTTCTTTTGGGCTGCTGCAGACGCTCT TGTTGTGTACATCGGGTCTGAGAATCCTTCGTGGATGCATGCCATTGCGA TACGTCCCCCTCTCGACCAATGGCAACGGTCTTCACGTTCGTGGTTGCAA TGCCTCGGCCTGCCTTGCTATTTGCTAGGACATGCGCGAGAACGCAATCA CGGCAGACTACGTGTCCGCGGCGCTGCGGAAGGCGGGGGCGGTAAAGCTT GACTGTTCGGAGCCGTCGTTGAAGCGCCTGACTCACGTCCAGCACATCTG CAGGTAGGCAAACAGCGAAAGAACCATGACTGCGGTGTTTGTTGTCGCCA TCGTGTGCAGCCGTACGGGGATCGGAGTCGCACGCATAGGTACAAAATAC GTTGTTTGACGGCCATCCCGTTGTGCGTCTGCTTCTAAAGGATGTGAGGG ATCTATCCTGCTCTGCCATGCGTGGTTTTTGCGTACCCCCCCCCGCCCCC CCCTTCTGACGACATTGTGTGCGCTGCCACTGCCGCTGTCATGTTGAAAC CCCTTCGAAACAAATTCCTACTTAGGCGCATCACGGCAACGTTGGCCCCC GGCACCGACAACGACTGCAGCGACGGGGGGGTACGTAGAGACGACGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15655:2423..3621-

>mRNA_Ecto-sp13_S_contig15655.4187.1 ID=mRNA_Ecto-sp13_S_contig15655.4187.1|Name=mRNA_Ecto-sp13_S_contig15655.4187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15655:2423..3621- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGTGACGGAGGCGTTGGCGGGTACGAGGGGGAGGGGGGACACGACAAC
CGAGGACGAGCGCCTGGGCAAGGAACTCATAGACAGCGAGAAGGACATGC
GCGAGAACGCAATCACGGCAGACTACGTGTCCGCGGCGCTGCGGAAGGCG
GGGGCGGTAAAGCTTGACTGTTCGGAGCCGTCGTTGAAGCGCCTGACTCA
CGTCCAGCACATCTGCAGGCGCATCACGGCAACGTTGGCCCCCGGCACCG
ACAACGACTGCAGCGACGGGGGGGTACGTAGAGACGACGCG
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