mRNA_Ecto-sp13_S_contig15651.4185.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15651.4185.1
Unique NamemRNA_Ecto-sp13_S_contig15651.4185.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15651.4185.1 vs. uniprot
Match: D7FJW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW1_ECTSI)

HSP 1 Score: 588 bits (1517), Expect = 7.380e-206
Identity = 334/382 (87.43%), Postives = 343/382 (89.79%), Query Frame = 1 
Query:    1 KATGKGDGRRENVVGRGDRRSNHSVGPDMDDSIMRGTAANVNAVEAEGGGCDAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGGAGAGGNGLV-AYGNGNGPAAGLLGSPGTRLGVTNPPGXXXXG-RSTFAPRRFNESEASPEGAPQIPSGRGSDNVGGGTQADGRVAGGGEPPRKGNTIGRGADAADRVQGPGSGADRPSAGAGGAWGDKSAGEGGGGEGRPALLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEDRDKASASMAIRQESEAIREEMKRFQLKYHERFTLLKKTLDEVTRSYPQLATPGTASAAGGASTPDPAKTAEEV 1140
            KATGKGDGRRENVV       +HSVGPDMDDSIMRGT AN NAVEA+GGGCDAAAELA+KFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGG GAGGNG   AYGNGNGPAAG+LGSPGTRLGVTNPPG    G RST APRRFNES+ SPEGAPQIPSGRGSDNVG GT+ADGRVAGGGE PR GNT+GRGAD A RVQGPGSGADRPSAGAGG W  +SAGEGGGGEGRPALLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEDRDK      +RQESEAIREEMKRFQLKYHERFTLLKKTLDEV RSYPQLA PGTASA GGAST DPAKT EEV
Sbjct:  114 KATGKGDGRRENVVXXXXXXXSHSVGPDMDDSIMRGTVANGNAVEAKGGGCDAAAELAQKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGGGGAGGNGPANAYGNGNGPAAGVLGSPGTRLGVTNPPGGGGGGWRSTSAPRRFNESDTSPEGAPQIPSGRGSDNVGDGTRADGRVAGGGETPRVGNTVGRGADTARRVQGPGSGADRPSAGAGGVWAGESAGEGGGGEGRPALLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEDRDK------VRQESEAIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTASATGGASTSDPAKTTEEV 489
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BLAST of mRNA_Ecto-sp13_S_contig15651.4185.1 vs. uniprot
Match: A0A6H5KVB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB2_9PHAE)

HSP 1 Score: 566 bits (1458), Expect = 1.340e-197
Identity = 320/359 (89.14%), Postives = 328/359 (91.36%), Query Frame = 1 
Query:   85 MDDSIMRGTAANVNAVEAEGGGCDAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGGAGAGGNGLVA-------YGNGNGPAAGLLGSPGTRLGVTNPPGXXXXGRSTFAPRRFNESEASPEGAPQIPSGRGSDNVGGGTQADGRVAGGGEPPRKGNTIGRGADAADRVQGPGSGADRPSAGAGGAWGDKSAGEGGGGEGRPALLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEDRDKASASMAIRQESEAIREEMKRFQLKYHERFTLLKKTLDEVTRSYPQLATPGTASAAGGASTPDPAKTAEEV 1140
            MDDSIMRGTAAN NAVEA GGGCDAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGGAGAGGNGLVA       YGNGNGPAAG+LGSPGTR GVTNPPG    GRST APRRFNE +ASPEGAPQIPSGRGSDNVG GT+ADGRVAGGGE PR GNT+GRGAD A RVQGPG GADRPSAGAGGAW  +SA EGGGGEGRP+LLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECE+RDKASAS A+RQESEAIREEMKRFQLKYHERFTLLKKTLDEV RSYPQLA PGTASAAGG ST DPAKT EEV
Sbjct:    1 MDDSIMRGTAANGNAVEANGGGCDAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGAPHLSSALGDSFFFLNKSVIFGGAGAGGNGLVAVGGPANAYGNGNGPAAGVLGSPGTRPGVTNPPGGGG-GRSTSAPRRFNEGDASPEGAPQIPSGRGSDNVGDGTRADGRVAGGGEIPRVGNTVGRGADTARRVQGPGCGADRPSAGAGGAWAGESAREGGGGEGRPSLLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEERDKASASTAVRQESEAIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPGTASAAGGTSTSDPAKTVEEV 358
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BLAST of mRNA_Ecto-sp13_S_contig15651.4185.1 vs. uniprot
Match: W7TZI2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZI2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.650e-7
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:  829 EEAQQGEIMRLLTCLKTLGDENVSLMKECEDRDKASASMAIRQESEAIREEMKRFQLKYHERFTLLKKTLDEVTRSYPQLATP 1077
            E  QQGE++RLL C+KTLGDEN  L+K  ED ++A      RQE+E IR E   FQ  Y +RF  L+  L+E    YP  + P
Sbjct:  353 EAVQQGEVVRLLACMKTLGDENALLIKRAEDGERA------RQENERIRRETLEFQELYAKRFKGLRAALEEFREKYPHESNP 429
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BLAST of mRNA_Ecto-sp13_S_contig15651.4185.1 vs. uniprot
Match: A0A7S4VNI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VNI7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.650e-5
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:  847 EIMRLLTCLKTLGDENVSLMKECEDRDKASASMAIRQESEAIREEMKRFQLKYHERFTLLKKTLDEVTRSYPQ 1065
            ++MRLL  LKTLGDEN SL++E E      A+ A R+E++A REEMK+F+  Y +RF  +K  L++    YP+
Sbjct:  654 QLMRLLDSLKTLGDENASLLQEVE------AAQAARKEAKAAREEMKQFKADYGKRFAKMKAALEKFRIQYPE 720
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15651.4185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJW1_ECTSI7.380e-20687.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVB2_9PHAE1.340e-19789.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TZI2_9STRA2.650e-746.99Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4VNI7_9STRA1.650e-546.58Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15651contigEcto-sp13_S_contig15651:1..3296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1140
Hectar predicted targeting categoryother localisation
Exons4
Cds size1140
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462828.9256105-CDS-Ecto-sp13_S_contig15651:0..1851681462828.9256105-CDS-Ecto-sp13_S_contig15651:0..185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15651 1..185 +
1681462828.9434023-CDS-Ecto-sp13_S_contig15651:666..14291681462828.9434023-CDS-Ecto-sp13_S_contig15651:666..1429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15651 667..1429 +
1681462828.9550166-CDS-Ecto-sp13_S_contig15651:2386..24511681462828.9550166-CDS-Ecto-sp13_S_contig15651:2386..2451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15651 2387..2451 +
1681462828.96548-CDS-Ecto-sp13_S_contig15651:3169..32961681462828.96548-CDS-Ecto-sp13_S_contig15651:3169..3296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15651 3170..3296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15651.4185.1prot_Ecto-sp13_S_contig15651.4185.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15651 1..3296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15651.4185.1

>prot_Ecto-sp13_S_contig15651.4185.1 ID=prot_Ecto-sp13_S_contig15651.4185.1|Name=mRNA_Ecto-sp13_S_contig15651.4185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=380bp
KATGKGDGRRENVVGRGDRRSNHSVGPDMDDSIMRGTAANVNAVEAEGGG
CDAAAELAKKFRPQRDDLLELERQLAKLGLESKMGGPGGRARQRLSSGGA
PHLSSALGDSFFFLNKSVIFGGAGAGGNGLVAYGNGNGPAAGLLGSPGTR
LGVTNPPGGGGGGRSTFAPRRFNESEASPEGAPQIPSGRGSDNVGGGTQA
DGRVAGGGEPPRKGNTIGRGADAADRVQGPGSGADRPSAGAGGAWGDKSA
GEGGGGEGRPALLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVS
LMKECEDRDKASASMAIRQESEAIREEMKRFQLKYHERFTLLKKTLDEVT
RSYPQLATPGTASAAGGASTPDPAKTAEEV
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mRNA from alignment at Ecto-sp13_S_contig15651:1..3296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15651.4185.1 ID=mRNA_Ecto-sp13_S_contig15651.4185.1|Name=mRNA_Ecto-sp13_S_contig15651.4185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15651:1..3296+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTACGGGCAAGGGAGACGGCAGACGGGAAAATGTGGTGGGTCGGGG
CGACCGGCGGAGTAACCACTCGGTCGGGCCTGATATGGACGATAGCATAA
TGAGGGGCACCGCGGCGAACGTCAACGCCGTGGAGGCGGAGGGGGGGGGG
TGCGACGCGGCGGCGGAGCTGGCCAAGAAATTTAGGTGTGCGACTGCTGT
GGTGCTGTTGCTGCTGCTGCCTTTTTGGTGGTGTAGAGATCTCTCTCGCT
CTCTCGTCAAAGAGCCGGGCGTAGTACAACATTCGATGTTTTCCCGTCCG
TCACGCGCTGGTGCTATTATGGTGGAGACAGAGTTCTTTCGTAATGTTCA
TTACGGAGTGTACAATAATCATGCCCTCCCGGGACTGTTGTTCTTGGTTT
TCACACGCAAGCGTCCGCACGTCGACATCCAAACTGTGTAAGCTAGGTTT
GGCAGCTGGCAAAACCGGAAGGGCAGCGTGTTTTCTAGATGGATGCAGAA
CTGAGCAGCAACACTTTGCTCCTACACCTGTAGATCCTTCAGTCAAGTGT
GCCACCTCACGATATAAGCCGGTGCAGACGTGGTGGCCTGGTTTGATACT
ATCAAACCGCACACGGCATGATCCACCCGTTCCAACGTACCCTGATCCCC
AACACTTACTCCCAAGGCCGCAACGGGATGACTTGCTAGAGCTGGAGCGC
CAGCTCGCCAAGCTCGGGCTCGAGAGCAAGATGGGGGGCCCCGGGGGGCG
AGCGCGCCAGCGACTCTCCAGTGGGGGGGCTCCCCACCTGTCTTCCGCCC
TGGGGGACTCGTTCTTCTTTCTCAACAAGTCGGTAATCTTCGGTGGCGCT
GGCGCCGGCGGGAACGGCCTCGTCGCGTACGGTAACGGTAACGGCCCCGC
CGCCGGTTTGTTGGGGTCGCCCGGGACGAGGTTGGGTGTCACGAACCCCC
CCGGCGGCGGCGGTGGCGGGAGATCAACCTTTGCCCCCCGCCGTTTCAAC
GAGAGCGAAGCTTCGCCGGAAGGGGCCCCGCAAATTCCTTCTGGCCGCGG
AAGCGACAACGTCGGCGGCGGCACCCAAGCCGACGGGAGAGTTGCAGGGG
GAGGAGAACCGCCGCGTAAAGGAAACACCATTGGTCGTGGTGCTGATGCT
GCAGATAGGGTGCAAGGTCCGGGTAGCGGAGCTGATCGACCTTCGGCTGG
AGCTGGCGGGGCGTGGGGTGACAAATCGGCGGGAGAGGGGGGTGGGGGCG
AGGGCCGACCGGCGTTGCTGCTCTCTTCGGCGGAGGAGGAAGCGAGGCGA
GTGCGGGAGGAGGAGGCGCAACAGGGCGAGATCATGCGGCTGCTGACGTG
CCTCAAGACGCTTGGGGACGAGAACGTGTCCCTCATGAAGGAGTGCGAAG
ACCGAGACAAGGCGAGTGCATCCATGGCTGTTCGGAAATAAAGGGACGAT
TCGGATGCAAGTGTGAATGTTGAGATGGCCTTGTCCTACCGATTATGAGT
GGCATCGACCTAATGGATTCGATAAAAGCATCGTGACCACAAGCTGGGGG
CGCAGCAATGTCTCCAACACACTGGGCCGTTTCTATCGAGTTCTGGTCGC
GGTGCTGCGCAGTCGAGGGATCGCCGCGGCTTTCCTGTTTTGGTTGGTCC
GGTCCGGTATGATAGGTGTCTTTTCCCCTTGTGGTGTATGTATGTGGTGT
GTGTGTCTCTTGTTTTTAGCGTCGACCGCTCTAACGGGCTGATCGATGAA
AATACGTCAGTCTCAGCGCGACTAAAATCAGAACAAGCTTCGAAAGGCAT
GATGTGTCCGAGTGGTGTGTTTGTGTGTGTATGCGTGTGTGTATTTTTTT
GTTGGCATCGACCGGGCCAATCAGCTGGCTAATGGAAAGACGGCAGTCTT
GTACAATATAGCGGGACAAAAATCGCAAACGCGCTCTCTAGTCATGTTGT
AGGCTTGTGTCTTTTTTTCCTTGTACGGGTACATGGTGTGGTTTCACACC
TCGGGTTGTTGTGTTTTCTGTCATTCGCTGTGCTCGCAAGCGACCGCGTT
CCTGCACACTCATGCCGTGTGTGCGCGCTCGCGGCTGCTGTTGCTGGTGG
TAGTGCCGCTGCTTCGGCTGCTTCTGCTGCTGCTGGTGTTGAATTTCAAA
GTGCAGACTACTCATGCGTTTGCGACCAACCTGTGACACTTGCCTCAACC
TAGCTGGTCCAGCCGCGGTGGTCGCCATTTGTTACCGCAAACGCGGCACA
TTCGAGGAAAACAGCCAAGACGACCCACGGTGACGCCTAGAACGCTTGTT
CCGCGGGTGCTTTTGATGGTGGTTGCATCGCACGTGCCGAGCGACTCACT
CCTGTGTGTTGCCTTTCTTCGCTTGTTGCCGCGTAGATACGGCAGGAGAG
TGAAGCCATACGCGAGGAGATGAAGAGGTTCCAGCTCAAGTACCACGAAA
GGTGCGGGTGTGACGGCTGAGAGCGTGTACAAACTGAAGACTGTTTGACC
ACCTATTTGCCCACCAACAAACTTTTGAAGGGCGCCGCGACAGGCGCTAG
ATGCAGTGTGCAGTCAGGCTACCGTTGCACTGTTGCTGTTCTGCTCTGCA
GGTTTAGTGCAGATGTTCGATTGAAGCTCAGACGATTTTTGGTGGATAGC
TTGTTGATGACAAGCAACCCTAATGGACTCGAAAGCGTTGCGCCTGCGGT
CAAGCTAGGGTTGGCGTAGTTTTATTGGCCACCCAGATGATGGTGTCCGT
TTGGCGGCCGGTTTGCGCGGTCGAAGCTCGTGACAACGACACACACATCA
CCGCGCTCGTAAGCAACCCTTCAGTTGGTGCCCACCAATAGTTCGGAAAG
CACCAGAAACTGGAAAGGGGGGATCCGCGCTTCTACGGATCGCGGCGCGC
CCTCCAGGCATCAAAGCCTTTGTCAGACGCAAAAAAAATTGCACACTTCA
GCGCTAAACGTTGCCGTATGAATGACCCTGAAATGGTTGGCCCTCTACGC
CAATCAAATCGTTTGAAAAACATGTGCAAGTGTGCACCTACTCTACGCTC
TCGCATGTGAGGAATCTGACGCCATCCCCGAATCTCCATATCGCGAACGT
GCAGTTGACAGCTCGCTCGAAATTTGGAAAAACGTTCCCCACGTACAACG
CCGCTCGTGCTTTTTTCAGGTTCACCCTGCTGAAGAAGACTCTTGACGAG
GTGACGAGGTCGTACCCTCAGCTTGCGACGCCAGGCACGGCTTCGGCGGC
GGGCGGAGCGAGCACCCCAGACCCCGCGAAGACTGCAGAGGAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15651:1..3296+

>mRNA_Ecto-sp13_S_contig15651.4185.1 ID=mRNA_Ecto-sp13_S_contig15651.4185.1|Name=mRNA_Ecto-sp13_S_contig15651.4185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15651:1..3296+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTACGGGCAAGGGAGACGGCAGACGGGAAAATGTGGTGGGTCGGGG
CGACCGGCGGAGTAACCACTCGGTCGGGCCTGATATGGACGATAGCATAA
TGAGGGGCACCGCGGCGAACGTCAACGCCGTGGAGGCGGAGGGGGGGGGG
TGCGACGCGGCGGCGGAGCTGGCCAAGAAATTTAGGCCGCAACGGGATGA
CTTGCTAGAGCTGGAGCGCCAGCTCGCCAAGCTCGGGCTCGAGAGCAAGA
TGGGGGGCCCCGGGGGGCGAGCGCGCCAGCGACTCTCCAGTGGGGGGGCT
CCCCACCTGTCTTCCGCCCTGGGGGACTCGTTCTTCTTTCTCAACAAGTC
GGTAATCTTCGGTGGCGCTGGCGCCGGCGGGAACGGCCTCGTCGCGTACG
GTAACGGTAACGGCCCCGCCGCCGGTTTGTTGGGGTCGCCCGGGACGAGG
TTGGGTGTCACGAACCCCCCCGGCGGCGGCGGTGGCGGGAGATCAACCTT
TGCCCCCCGCCGTTTCAACGAGAGCGAAGCTTCGCCGGAAGGGGCCCCGC
AAATTCCTTCTGGCCGCGGAAGCGACAACGTCGGCGGCGGCACCCAAGCC
GACGGGAGAGTTGCAGGGGGAGGAGAACCGCCGCGTAAAGGAAACACCAT
TGGTCGTGGTGCTGATGCTGCAGATAGGGTGCAAGGTCCGGGTAGCGGAG
CTGATCGACCTTCGGCTGGAGCTGGCGGGGCGTGGGGTGACAAATCGGCG
GGAGAGGGGGGTGGGGGCGAGGGCCGACCGGCGTTGCTGCTCTCTTCGGC
GGAGGAGGAAGCGAGGCGAGTGCGGGAGGAGGAGGCGCAACAGGGCGAGA
TCATGCGGCTGCTGACGTGCCTCAAGACGCTTGGGGACGAGAACGTGTCC
CTCATGAAGGAGTGCGAAGACCGAGACAAGGCGAGTGCATCCATGGCTAT
ACGGCAGGAGAGTGAAGCCATACGCGAGGAGATGAAGAGGTTCCAGCTCA
AGTACCACGAAAGGTTCACCCTGCTGAAGAAGACTCTTGACGAGGTGACG
AGGTCGTACCCTCAGCTTGCGACGCCAGGCACGGCTTCGGCGGCGGGCGG
AGCGAGCACCCCAGACCCCGCGAAGACTGCAGAGGAGGTA
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