mRNA_Ecto-sp13_S_contig15633.4178.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15633.4178.1
Unique NamemRNA_Ecto-sp13_S_contig15633.4178.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15633.4178.1 vs. uniprot
Match: D7FVP5_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP5_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 4.050e-28
Identity = 61/81 (75.31%), Postives = 63/81 (77.78%), Query Frame = 2 
Query:   65 PCWIPWAEG*RL*RQADIVARAPAAATWHPWTHRPPPRLASAVVTTAKVEEGQDVDVGTARAASGRRGQGTPRDA*NPQLR 307
            P   P   G RL RQADIVA+APAAA WHPWT RPPPRLA+AV TTAKV EGQ VDV TAR  SGRRGQGTPRDA NPQ R
Sbjct:  380 PXXQPPVAGERLQRQADIVAQAPAAAAWHPWTRRPPPRLANAVATTAKVGEGQGVDVRTARTPSGRRGQGTPRDASNPQAR 460
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15633.4178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVP5_ECTSI4.050e-2875.31Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15633contigEcto-sp13_S_contig15633:25..1299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size459
Hectar predicted targeting categoryother localisation
Exons3
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462828.3100488-CDS-Ecto-sp13_S_contig15633:24..1131681462828.3100488-CDS-Ecto-sp13_S_contig15633:24..113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15633 25..113 +
1681462828.3186512-CDS-Ecto-sp13_S_contig15633:612..8241681462828.3186512-CDS-Ecto-sp13_S_contig15633:612..824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15633 613..824 +
1681462828.3268464-CDS-Ecto-sp13_S_contig15633:1141..12991681462828.3268464-CDS-Ecto-sp13_S_contig15633:1141..1299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15633 1142..1299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15633.4178.1prot_Ecto-sp13_S_contig15633.4178.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15633 25..1299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15633.4178.1

>prot_Ecto-sp13_S_contig15633.4178.1 ID=prot_Ecto-sp13_S_contig15633.4178.1|Name=mRNA_Ecto-sp13_S_contig15633.4178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
GQRKGTNGSNEIDGANSRFQQAVLDTMGGRVAPITAGRHSGTSSGGGNMA
SLDPSATAAAGKRRSNDGEGGGGTGRRCRDGSSGVGSPGAGNAKRRLKSA
AARVAAGGGGNYHAVDRRHYPAEARPAGDAAANRRSHHRRGSPGGSNGGR
GGG
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mRNA from alignment at Ecto-sp13_S_contig15633:25..1299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15633.4178.1 ID=mRNA_Ecto-sp13_S_contig15633.4178.1|Name=mRNA_Ecto-sp13_S_contig15633.4178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1275bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15633:25..1299+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCAGAGGAAGGGGACCAACGGGAGTAACGAGATAGATGGGGCAAACAG
CAGGTTTCAGCAGGCCGTGTTGGATACCATGGGCGGAAGGTGGGCAGGCG
ATTATTTTTTGTTGTCGATATCAATCGTGAAAGAACAAATTCTACATCCA
TCCCAACATTGACCCTCCATGCCAAATCCCGCCGTTCCAAACCAACTTGG
TAGAATATGTTGGTTAGTTTTTGAATTCGACGCACCTTCTGAACGGCTGT
AGTTTCGAAACACCTGCACGCGGCTGTTGGCGAGGGGATTTTTCGTGCCC
GGAGCCGTCTGTGGTGCAAAATTATCAACCGAGTCATAGTCGTGTTGTGC
ACATCCCGTACCCACCTAGTCTACTACTGCTGTTTGCTAATATGCTTTCT
CGGCCGTTTTCTTTTCCCTCCTGCTACTCCAGCTGGGGGACTGGTAAAAA
CTCGTTTTTTGTTTGTTTGTTATGCGGGGTTCGCACGCGTTGATGACCCA
TGCCTATCTCGTTCCTCTGCGCCGCAACACCATGCTGCGGTGCGTTATCC
TCAAACGAATCCTTCTTCACCGCCATCTCCCCGACCAGGGTAGCGCCTAT
AACGGCAGGCAGACATAGTGGCACGAGCTCCGGCGGCGGCAACATGGCAT
CCTTGGACCCATCGGCCACCGCCGCGGCTGGCAAGCGCCGTAGTAACGAC
GGCGAAGGTGGAGGAGGGACAGGACGTCGATGTCGGGACGGCTCGAGCGG
CGTCGGGTCGCCGGGGGCAGGGAACGCCAAGAGACGCTTAAAATCCGCAG
GCGAGAGAAGAAACACGCAGCAAGCTGCCGTAAGTAGACAAAAGCAACCT
CGTCGCTCATGCTTGGGTCTGTCCGTCAACACGCAAGCTGCTTTTCATTC
GAAAGGGACTCGACTTTTGTTGCTGCGGTCTGTCTATCGTTCCCCACCAA
ACAAGAAACAGTCCTGCTCGCGCGAGTTGAGCACAGTAAGATGCCATGTT
GGTAGCATGCGCGCTGTGGGTCTCGCCTATGTTTGCGTTGTGTTTGCCGC
CCCTGATACTGCACGCCACAAACACGAAACTGACTTCCATCCGTTGTCCT
CGTCTTCGCCCGGGTAGCTGCGCGTGTGGCAGCCGGCGGTGGCGGCAACT
ACCACGCCGTCGATCGGCGCCACTATCCGGCGGAGGCGCGCCCTGCTGGC
GATGCCGCCGCTAATCGTCGTAGCCACCATCGACGTGGGAGTCCGGGTGG
AAGCAACGGCGGTCGCGGCGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15633:25..1299+

>mRNA_Ecto-sp13_S_contig15633.4178.1 ID=mRNA_Ecto-sp13_S_contig15633.4178.1|Name=mRNA_Ecto-sp13_S_contig15633.4178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15633:25..1299+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCAGAGGAAGGGGACCAACGGGAGTAACGAGATAGATGGGGCAAACAG
CAGGTTTCAGCAGGCCGTGTTGGATACCATGGGCGGAAGGGTAGCGCCTA
TAACGGCAGGCAGACATAGTGGCACGAGCTCCGGCGGCGGCAACATGGCA
TCCTTGGACCCATCGGCCACCGCCGCGGCTGGCAAGCGCCGTAGTAACGA
CGGCGAAGGTGGAGGAGGGACAGGACGTCGATGTCGGGACGGCTCGAGCG
GCGTCGGGTCGCCGGGGGCAGGGAACGCCAAGAGACGCTTAAAATCCGCA
GCTGCGCGTGTGGCAGCCGGCGGTGGCGGCAACTACCACGCCGTCGATCG
GCGCCACTATCCGGCGGAGGCGCGCCCTGCTGGCGATGCCGCCGCTAATC
GTCGTAGCCACCATCGACGTGGGAGTCCGGGTGGAAGCAACGGCGGTCGC
GGCGGCGGC
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