mRNA_Ecto-sp13_S_contig15631.4177.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15631.4177.1
Unique NamemRNA_Ecto-sp13_S_contig15631.4177.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15631.4177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15631contigEcto-sp13_S_contig15631:2697..3553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size149
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462828.275501-CDS-Ecto-sp13_S_contig15631:2696..27671681462828.275501-CDS-Ecto-sp13_S_contig15631:2696..2767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15631 2697..2767 +
1681462828.2849731-CDS-Ecto-sp13_S_contig15631:3476..35521681462828.2849731-CDS-Ecto-sp13_S_contig15631:3476..3552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15631 3477..3552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15631.4177.1prot_Ecto-sp13_S_contig15631.4177.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15631 2697..3552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15631.4177.1

>prot_Ecto-sp13_S_contig15631.4177.1 ID=prot_Ecto-sp13_S_contig15631.4177.1|Name=mRNA_Ecto-sp13_S_contig15631.4177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
RNPGVNWTTRQAGNYLPRPKQTQGLQLYCLSRTNPRGARSSWSKTTSFL
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mRNA from alignment at Ecto-sp13_S_contig15631:2697..3553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15631.4177.1 ID=mRNA_Ecto-sp13_S_contig15631.4177.1|Name=mRNA_Ecto-sp13_S_contig15631.4177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=857bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15631:2697..3553+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAATCCCGGCGTCAATTGGACAACTCGTCAAGCTGGAAACTATCTCCC
TCGACCTAAACAAACTCAGGGGTAGGTGTCTCCCGACGGCTTCGGCATGT
ACACGCCACACCAAATATATTGGATCCCGCCGATGCAAGACGGGACTCAT
GCATGTTGCTTCTACAGAAGTCGAACCAAAAACTTTCCGCCCGCCAAGTG
AACAACCCCCCACACGAAAACACAAAGCACCTTTGGTGCACGAAAAAATG
GTAGTACCCCGGTGATAACGCGTTTTGCTTTTCGCTCCCCTTACTTGAAC
GCCAAGTGTTTCTGTGTGACCGTGCCCGGGGCATTCACGGGGCAACCCAT
CACCTTGCAAAGGCTTGCTGCTGCTGTTTTGTAGTTTTATATAATCGTTC
CATGACCTCAAACTGGAGCACTACCTCCCCGTTACTCCTGCCGACACAGA
CCCAAGTGTGCTGCCGCCGTTGCTTTTGTTGTCGAATATTCTATCGTAGA
TGCTGCTTTTGGCCAACATAGTGGGTTCCAACGAGAGATGCCCACTTTGT
GTTTGGGTGTGTCCTGGGGAGGCCCCAAACAGAAAATGTGATAGACGTGG
AGACCAAGGGCCTTTCGCCCGTAGAGGTGATCGTTTCGGTTGTGTTTTCA
TGCCCCTCTACCTTTGCAAGCGCTCATCCCGGTGGTATTTTGGCACGGAA
CCTTGTTTTTCGCCCCCGGTACATGCACTCGTTCTTGAAGTCTGTTATCT
CCGTTGCGCGAAACACAATGCAAGGAAAAGGTTACAGCTGTACTGCTTGA
GCAGGACAAATCCCCGTGGAGCTAGAAGCTCATGGTCGAAGACAACCAGC
TTTCTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15631:2697..3553+

>mRNA_Ecto-sp13_S_contig15631.4177.1 ID=mRNA_Ecto-sp13_S_contig15631.4177.1|Name=mRNA_Ecto-sp13_S_contig15631.4177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15631:2697..3553+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAATCCCGGCGTCAATTGGACAACTCGTCAAGCTGGAAACTATCTCCC
TCGACCTAAACAAACTCAGGGGTTACAGCTGTACTGCTTGAGCAGGACAA
ATCCCCGTGGAGCTAGAAGCTCATGGTCGAAGACAACCAGCTTTCTG
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