mRNA_Ecto-sp13_S_contig15610.4172.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15610.4172.1
Unique NamemRNA_Ecto-sp13_S_contig15610.4172.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: D7FUE2_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE2_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 2.640e-44
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR
Sbjct:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 77
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A835YX65_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 125 bits (313), Expect = 7.190e-32
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MP IEVGTVGGGTSLPAQAACLDV+GCRGA+QAP  PG NA+Q+A+V+A A LAGELSL+AALASNQLVRAHMQHNR
Sbjct:  485 MPCIEVGTVGGGTSLPAQAACLDVIGCRGASQAPDAPGANARQLAQVIAAAVLAGELSLMAALASNQLVRAHMQHNR 561
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S2FDH1_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDH1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.650e-27
Identity = 55/77 (71.43%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MPSIEVGTVGGGTSLPAQA CLD++G RGA++AP  PG+NAQ++ ++VA A +AGELSL++ALA+N+LV+AHMQHNR
Sbjct:  370 MPSIEVGTVGGGTSLPAQAQCLDIMGVRGASRAPKNPGDNAQKLGRMVAAAVMAGELSLLSALAANELVKAHMQHNR 446
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S0ST55_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0ST55_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.420e-27
Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAP-GRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MPSIEVGTVGGGT LPAQAACLD++  RGA++ P  +PG+NA+++A+V+  A LAGELSL+AALA+N LVR+HMQHNR
Sbjct:   87 MPSIEVGTVGGGTHLPAQAACLDILDVRGASKGPHSQPGDNARKLAQVIGAAVLAGELSLIAALAANHLVRSHMQHNR 164
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A1E7FDJ4_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDJ4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.070e-26
Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MPSIEVGTVGGGTSLPAQAACL+ +GCRG    PG   +NA+++A VVA ATLAGELSL+AALA+N LV+AHM HNR
Sbjct:  141 MPSIEVGTVGGGTSLPAQAACLEAIGCRGGASTPG---DNARKLATVVAAATLAGELSLLAALAANTLVQAHMVHNR 214
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S1Y0Q7_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.950e-26
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MPS+EVGTVGGGTSLPAQ ACL+V+   GA++AP  PG NAQ ++K +AGA LAGE+SL+AALASNQLVRAHM HNR
Sbjct:  366 MPSLEVGTVGGGTSLPAQRACLEVMNVAGASRAPKAPGTNAQALSKAIAGAVLAGEMSLMAALASNQLVRAHMIHNR 442
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S1CUP3_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUP3_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.180e-25
Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MPSIEVGTVGGGT LPAQAACL  +G +G  +    PG+NA+Q+A VVA AT+AGELSL+AALASN LV AHM HNR
Sbjct:   23 MPSIEVGTVGGGTGLPAQAACLKAIGVKGGGE---NPGDNAKQLAHVVAAATMAGELSLMAALASNSLVAAHMTHNR 96
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A812U1Q8_SYMMI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U1Q8_SYMMI)

HSP 1 Score: 97.8 bits (242), Expect = 7.270e-24
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MPSIEVGTVGGGT LPAQ+ CLD+ G RGA++     G+NA+Q+A++V  + LAGELSL+AALA+N LVR+HMQHNR
Sbjct:   87 MPSIEVGTVGGGTHLPAQSGCLDICGVRGASRVAA--GDNARQLAQIVGASVLAGELSLMAALAANHLVRSHMQHNR 161
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S4ALR6_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALR6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 8.460e-24
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MPSIEVGTVGGGTSLPAQAACL+ +GC+G    PG    NAQ++A VVA AT+AGELSL+AALA+N LV+AHM HNR
Sbjct:  555 MPSIEVGTVGGGTSLPAQAACLEAIGCKGGGSTPGA---NAQKLATVVAAATMAGELSLLAALAANTLVQAHMVHNR 628
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BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Match: A0A7S3L823_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L823_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.600e-23
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNR 231
            MPSIEVGTVGGGT L AQAACL++VGCRG       PG NA+++A VVA ATLAGELSL+AALA+N LV+AHMQHNR
Sbjct:  588 MPSIEVGTVGGGTRLAAQAACLELVGCRGGHST--EPGANARKLATVVASATLAGELSLLAALAANTLVQAHMQHNR 662
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15610.4172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUE2_ECTSI2.640e-44100.00Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A835YX65_9STRA7.190e-3283.123-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S2FDH1_9STRA1.650e-2771.433-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S0ST55_9STRA8.420e-2769.23Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A1E7FDJ4_9STRA2.070e-2672.73Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S1Y0Q7_9STRA4.950e-2672.733-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S1CUP3_9STRA1.180e-2570.13Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A812U1Q8_SYMMI7.270e-2466.23Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S4ALR6_9STRA8.460e-2471.433-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S3L823_9STRA1.600e-2372.733-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15610contigEcto-sp13_S_contig15610:3535..4118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score101.7
Seed ortholog evalue1.6e-19
Seed eggNOG ortholog159749.K0T6D9
Preferred nameHMG1
Model size231
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0003674,GO:0003824,GO:0004420,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006066,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006644,GO:0006694,GO:0006696,GO:0006720,GO:0006721,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009987,GO:0010142,GO:0012505,GO:0016020,GO:0016021,GO:0016114,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016614,GO:0016616,GO:0019287,GO:0019637,GO:0019693,GO:0031090,GO:0031224,GO:0031903,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032991,GO:0033865,GO:0033875,GO:0034032,GO:0034399,GO:0034641,GO:0035383,GO:0042175,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0046165,GO:0046483,GO:0046490,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072521,GO:0090407,GO:0097384,GO:0098588,GO:0098805,GO:0098827,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1902652,GO:1902653,GO:1902767,GO:1905368,GO:1905369
Exons2
EggNOG free text desc.Hydroxymethylglutaryl-coenzyme A reductase
EggNOG OGs2XANU@2836,COG1257@1,KOG2480@2759
EC1.1.1.34
Cds size231
COG Functional cat.I
BiGG ReactioniMM904.YML075C,iND750.YML075C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462827.8808475-CDS-Ecto-sp13_S_contig15610:3534..36711681462827.8808475-CDS-Ecto-sp13_S_contig15610:3534..3671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15610 3535..3671 +
1681462827.8912284-CDS-Ecto-sp13_S_contig15610:4024..41181681462827.8912284-CDS-Ecto-sp13_S_contig15610:4024..4118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15610 4025..4118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15610.4172.1prot_Ecto-sp13_S_contig15610.4172.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15610 3535..4118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15610.4172.1

>prot_Ecto-sp13_S_contig15610.4172.1 ID=prot_Ecto-sp13_S_contig15610.4172.1|Name=mRNA_Ecto-sp13_S_contig15610.4172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAG
ATLAGELSLVAALASNQLVRAHMQHNR
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mRNA from alignment at Ecto-sp13_S_contig15610:3535..4118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15610.4172.1 ID=mRNA_Ecto-sp13_S_contig15610.4172.1|Name=mRNA_Ecto-sp13_S_contig15610.4172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=584bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15610:3535..4118+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTCAATCGAGGTCGGCACCGTCGGCGGCGGCACCAGCCTGCCAGC
ACAGGCGGCGTGCCTGGACGTTGTGGGCTGCCGAGGGGCGACTCAGGCGC
CTGGCCGGCCTGGGGAAAACGCTCAGCAAATGGCCAAGTGAGTCTTGTTT
CTTCTTTTGCCCAGTGGCCGCATATTTTTCCGTTCTTGTTTTTTTTTGCT
CTGCTTGTCGTCGGCTGTTGTACTCTTGTGGACCCCGCGGGTGTAGTGAT
TAGTACCGGCCTTGGCGTGGTGAAACTCCCTTGGCGCAAAACTCTCGCGC
AGCGAGATTTTAGACAGGCTGTGAGACGCCTTTGCACAAGGACGAATGGG
ACGTCTTCGCCTCGCTGCTCTTCCCCAGTCGCGGAGAACCAAATACTCGT
ACGTATTTGCTGACTCTTATCCCGGTGTTATCGTTGCCCCCGTGATGTGG
CTCTCTTTCCACCCCCCGTACTCTCGGTCGTCGTTATTAGGGTTGTGGCC
GGCGCTACCCTGGCGGGAGAGCTGTCCCTGGTGGCTGCCTTGGCATCCAA
CCAGCTCGTGCGTGCCCACATGCAGCACAACCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15610:3535..4118+

>mRNA_Ecto-sp13_S_contig15610.4172.1 ID=mRNA_Ecto-sp13_S_contig15610.4172.1|Name=mRNA_Ecto-sp13_S_contig15610.4172.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15610:3535..4118+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTCAATCGAGGTCGGCACCGTCGGCGGCGGCACCAGCCTGCCAGC
ACAGGCGGCGTGCCTGGACGTTGTGGGCTGCCGAGGGGCGACTCAGGCGC
CTGGCCGGCCTGGGGAAAACGCTCAGCAAATGGCCAAGGTTGTGGCCGGC
GCTACCCTGGCGGGAGAGCTGTCCCTGGTGGCTGCCTTGGCATCCAACCA
GCTCGTGCGTGCCCACATGCAGCACAACCGC
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