mRNA_Ecto-sp13_S_contig156.4165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: D7FHZ6_ECTSI (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHZ6_ECTSI) HSP 1 Score: 477 bits (1227), Expect = 5.450e-166 Identity = 265/391 (67.77%), Postives = 269/391 (68.80%), Query Frame = 1
Query: 1 RHDRRMSLPSPAGLSAIEIEDAHTPIPLGGFLGGSPTGEVNGTPGRPHRERNHSGGGFVTLKRKGARDVVRQAHARSASAGSGGGKPAGSCRTCGGG---------------------------------------------GTPVTCLEFFPGDGGGRGGRGGD------------------------------NCGYDECDHRSTVCDACPYCEDTCEVAWCNGCDETRMHLEEAYGKIMLSAAEVPGAGARHGGG----ETGADYGGGSRLKLAPVLSRRYPRKSSYTLCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGRDCAEDFFFHSRAAKKQWRQYRIGSLVACRGGQEDGTGEAAGGERSMRTTSDCVIS 936
RHDRRMSLPSPA LS IEIEDAHTPIPLGGF GGSPTGEV GTPGRPHRERNHSGGGFVTLKRKG RDVVRQAHARSASAGS GGKPAGSCRTCG G P P G GGRG + G+ RSTVCDACPYCEDTCEVAWCNGCDETRMHLEEAYGK+MLSAAEV GAG RH ETGAD GGGSRLKLAPVLSRRYPRKSSYTLCEVRRRK+TGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGRDCAEDFFFHSRAAKKQWRQYRIGSLVACR GQ DG G AAG ERSMR S CVIS
Sbjct: 33 RHDRRMSLPSPAELSVIEIEDAHTPIPLGGFPGGSPTGEVIGTPGRPHRERNHSGGGFVTLKRKGVRDVVRQAHARSASAGSVGGKPAGSCRTCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXNCGYDERDHVHDLEANEPLGPPSPMPFRRPSGSGSVGGRGSXXXRRGSGTPGSAAAAVASLEDAAQRIAVDPDSGHSYFVERSTVCDACPYCEDTCEVAWCNGCDETRMHLEEAYGKLMLSAAEVAGAGGRHXXXXXXCETGADNGGGSRLKLAPVLSRRYPRKSSYTLCEVRRRKVTGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGRDCAEDFFFHSRAAKKQWRQYRIGSLVACRPGQGDGDGGAAGDERSMRIASSCVIS 423
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: A0A7S3LGK6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGK6_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 4.630e-20 Identity = 53/158 (33.54%), Postives = 78/158 (49.37%), Query Frame = 1
Query: 391 STVCDACPYCEDTCEVAWCNGCDETRMHLEEAYGKIMLSAAEVPGAGARHGGGETGADYGGGSRLKLAPVLSRRYPRKSSYTLCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGG-RDCAEDFFFHSRAAKKQWRQYRIGSLVACRG 861
S C+ACPYC DTC G D ++ + + + +S P R PV +TLC+VR+ + W+V+ +YDVTA + HPGG+ +L+ AGG RDC +DF FHS+A ++ W +Y++G LV C G
Sbjct: 46 SGPCEACPYCSDTC------GDDSCKLCVNKTC--LEISTPTCP------------------PRSASLPV----------FTLCQVRKHCTEKSVWIVAGKDIYDVTAYIDRHPGGRECILRKAGGARDCTDDFQFHSKAGRRGWNKYKVGVLVPCPG 167
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: A0A7S2Q1K2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1K2_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.070e-18 Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 1
Query: 385 HRSTVCDACPYCEDTCEVA-WCNGCDETR-------MHLEEAYGKIMLSAAEVPGAGARHGGGETGADYGGGSRLKLAPVLSRRYPRKSSYTLCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGR-DCAEDFFFHSRAAKKQWRQYRIGSLVAC 855
H CDACP C DTC+ A C C + R MH E + + L ++ G + + ++YT+C+++R + W++ ++YD T + HPGG ++L+ +GG DC ED FHS A+++WR++++G+LVAC
Sbjct: 33 HNHAQCDACPCCRDTCDNANSCIPCQKKRNATTMPRMH-ESSSNLLALLSSICSGESPENNNAQ------------------------NTYTMCQLKRHNHAESAWILVGDTIYDATPYIRSHPGGTETILRKSGGAADCTEDMRFHSGRAQREWRKFKVGTLVAC 173
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: A0A6U3SNP3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SNP3_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.170e-17 Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 1
Query: 397 VCDACPYCEDTCEVAWCNGCDETRMHLEEAYGKIMLSAAEVPGAGARHGGGETGADYGGGSRLKLAPVLSRRYPRKSSYTLCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGR-DCAEDFFFHSRAAKKQWRQYRIGSLVACRGGQEDG 876
VCDACP+C DTC +C+ C + R + + G H G +S YT+C++RR + W++ ++YD T + HPGG +S+++ +GG+ DC ED FHS+ A K W++ ++G L C G EDG
Sbjct: 47 VCDACPFCSDTCNNPFCSSCAKKRSRGNK----------NIRGT---HSG-------------------------ESLYTMCQLRRHNHLESAWLLVGKTIYDATPYISAHPGGVKSIIRKSGGQADCTEDMGFHSKKAIKLWKKNKVGLLCRCPG--EDG 167
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: A0A422NRL8_TRYRA (Cytochrome b5 n=1 Tax=Trypanosoma rangeli TaxID=5698 RepID=A0A422NRL8_TRYRA) HSP 1 Score: 83.2 bits (204), Expect = 1.300e-15 Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 631 YTLCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGG-RDCAEDFFFHSRAAKKQWRQYRIGSLVA 852
+TL EVR+ + W+V+ VYDVT+ L HPGG ++L+ +GG +DC EDF+FHSRAA++ W Y+IG L A
Sbjct: 18 FTLDEVRQHNDRLSTWIVAGNFVYDVTSILDTHPGGANALLRRSGGVKDCTEDFYFHSRAARRTWDHYKIGELDA 92
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: Q4DUS3_TRYCC (Cytochrome b5, putative n=5 Tax=Trypanosoma cruzi TaxID=5693 RepID=Q4DUS3_TRYCC) HSP 1 Score: 82.0 bits (201), Expect = 2.950e-15 Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 631 YTLCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGG-RDCAEDFFFHSRAAKKQWRQYRIGSL 846
+TL EVR+ + W+V+ SVYDVT L HPGG ++L+ GG +DC EDF+FHSRAA++ W +IG L
Sbjct: 18 FTLDEVRQHNDRSSIWIVAGNSVYDVTHILDTHPGGLNALLRRGGGVKDCTEDFYFHSRAARRTWNSLKIGEL 90
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: A0A0P1B1F7_PLAHL (Cytochrome b5 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1F7_PLAHL) HSP 1 Score: 83.6 bits (205), Expect = 4.120e-15 Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 637 LCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGRDCAEDFFFHSRAAKKQWRQYRIGSLVAC 855
+CEV+ +CW+VS G VYDVT + DHPGG RS+L+ AGG DCA D FHS+ A+K + IG L C
Sbjct: 161 MCEVKLHCSLDSCWLVSSGQVYDVTGQVTDHPGGVRSILRKAGGPDCARDMKFHSKNARKIMEKCFIGKLRQC 233
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: M4BQE5_HYAAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQE5_HYAAE) HSP 1 Score: 83.2 bits (204), Expect = 1.300e-14 Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 637 LCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGRDCAEDFFFHSRAAKKQWRQYRIGSLVACRGGQEDGTGEA 888
+CEV+ + +CW+VS G VYDVT + HPGG RS+L+ AGG DCA D FH+++A+K + IG L C G D G+A
Sbjct: 219 MCEVKLHRSLESCWLVSSGQVYDVTGLVIAHPGGVRSILRKAGGPDCARDMKFHTKSARKMMEKCFIGKLEQC-GEDVDCAGDA 301
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: W2PHH2_PHYPN (Cytochrome b5 heme-binding domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2PHH2_PHYPN) HSP 1 Score: 82.8 bits (203), Expect = 1.930e-14 Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 637 LCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGRDCAEDFFFHSRAAKKQWRQYRIGSLVACRGGQEDGTGEA 888
+CEV+ + +CW+V G VYDVT + HPGG RS+L+ AGG DCA D FH++ A+K + IG L C G D +GEA
Sbjct: 226 MCEVKLHRSLESCWLVCSGQVYDVTGLVTAHPGGVRSILRKAGGPDCARDMKFHTKNARKMMEKCFIGKLQQC-GDDVDCSGEA 308
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Match: W2Y689_PHYPR (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=W2Y689_PHYPR) HSP 1 Score: 82.8 bits (203), Expect = 1.930e-14 Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 637 LCEVRRRKITGACWVVSQGSVYDVTAALPDHPGGKRSVLKNAGGRDCAEDFFFHSRAAKKQWRQYRIGSLVACRGGQEDGTGEA 888
+CEV+ + +CW+V G VYDVT + HPGG RS+L+ AGG DCA D FH++ A+K + IG L C G D +GEA
Sbjct: 226 MCEVKLHRSLESCWLVCSGQVYDVTGLVTAHPGGVRSILRKAGGPDCARDMKFHTKNARKMMEKCFIGKLQQC-GDDVDCSGEA 308 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig156.4165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig156.4165.1 >prot_Ecto-sp13_S_contig156.4165.1 ID=prot_Ecto-sp13_S_contig156.4165.1|Name=mRNA_Ecto-sp13_S_contig156.4165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp MSLPSPAGLSAIEIEDAHTPIPLGGFLGGSPTGEVNGTPGRPHRERNHSGback to top mRNA from alignment at Ecto-sp13_S_contig156:32887..34029- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig156.4165.1 ID=mRNA_Ecto-sp13_S_contig156.4165.1|Name=mRNA_Ecto-sp13_S_contig156.4165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig156:32887..34029- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig156:32887..34029- >mRNA_Ecto-sp13_S_contig156.4165.1 ID=mRNA_Ecto-sp13_S_contig156.4165.1|Name=mRNA_Ecto-sp13_S_contig156.4165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig156:32887..34029- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |