mRNA_Ecto-sp13_S_contig15598.4161.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15598.4161.1
Unique NamemRNA_Ecto-sp13_S_contig15598.4161.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15598.4161.1 vs. uniprot
Match: D7FYZ2_ECTSI (GBBH-like_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ2_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.260e-36
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 VTSTQVLANERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTVFPGDVDPTLKPVE 177
            V+STQVLANERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTVFPGDVDP LKPVE
Sbjct:   80 VSSTQVLANERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTVFPGDVDPGLKPVE 138
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BLAST of mRNA_Ecto-sp13_S_contig15598.4161.1 vs. uniprot
Match: A0A6H5KBM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.750e-31
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 VTSTQVLANERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTVFPGDVDPTLKPVEVT 183
            V+ST+VL +ERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRT+FPGDVDP LKPVE +
Sbjct:   78 VSSTEVLPSERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTLFPGDVDPGLKPVETS 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15598.4161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYZ2_ECTSI3.260e-3696.61GBBH-like_N domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBM7_9PHAE4.750e-3186.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15598contigEcto-sp13_S_contig15598:3912..4097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size186
Hectar predicted targeting categoryother localisation
Exons1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462826.9015625-CDS-Ecto-sp13_S_contig15598:3911..40971681462826.9015625-CDS-Ecto-sp13_S_contig15598:3911..4097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15598 3912..4097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15598.4161.1prot_Ecto-sp13_S_contig15598.4161.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15598 3912..4097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15598.4161.1

>prot_Ecto-sp13_S_contig15598.4161.1 ID=prot_Ecto-sp13_S_contig15598.4161.1|Name=mRNA_Ecto-sp13_S_contig15598.4161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
VTSTQVLANERQVEVLWDDGHNSYFDYTWLRVNCPSFLHESGQRTVFPGD
VDPTLKPVEVTN
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mRNA from alignment at Ecto-sp13_S_contig15598:3912..4097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15598.4161.1 ID=mRNA_Ecto-sp13_S_contig15598.4161.1|Name=mRNA_Ecto-sp13_S_contig15598.4161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15598:3912..4097+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACTTCAACTCAGGTCCTAGCAAACGAACGGCAGGTGGAAGTACTATG
GGATGACGGGCACAACTCGTACTTCGACTATACTTGGCTGCGAGTGAACT
GCCCGTCCTTCTTGCACGAGAGCGGTCAGAGAACCGTGTTTCCGGGCGAT
GTGGATCCAACATTAAAGCCAGTGGAGGTGACAAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15598:3912..4097+

>mRNA_Ecto-sp13_S_contig15598.4161.1 ID=mRNA_Ecto-sp13_S_contig15598.4161.1|Name=mRNA_Ecto-sp13_S_contig15598.4161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15598:3912..4097+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACTTCAACTCAGGTCCTAGCAAACGAACGGCAGGTGGAAGTACTATG
GGATGACGGGCACAACTCGTACTTCGACTATACTTGGCTGCGAGTGAACT
GCCCGTCCTTCTTGCACGAGAGCGGTCAGAGAACCGTGTTTCCGGGCGAT
GTGGATCCAACATTAAAGCCAGTGGAGGTGACAAAT
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