mRNA_Ecto-sp13_S_contig1559.4156.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1559.4156.1 vs. uniprot
Match: D8LME0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME0_ECTSI) HSP 1 Score: 941 bits (2432), Expect = 0.000e+0 Identity = 481/490 (98.16%), Postives = 484/490 (98.78%), Query Frame = 1
Query: 502 MSRKSNSRVIVSATAVLGVLVGLLVAEGASAQQVGNLTGLSRGYSVNLTGSSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDASSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYGLGVAPDGANVYVTDDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPGGNTINIDKTWSALVVSDGLGDIYVADWSDSKIFWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDVWEGGAYPRVAVPTPDSDGSGTSAVDVTLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHYSE 1971
M+RKSNSRV VSATAVLGVLVGLL AEGA AQQVGNLTGLSRGYSVNLTGSSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPD+SSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYGLGVAPDGANVYV DDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNP GNTINIDKTWSALVVSDGLGDIYVADWSDSKI WVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDVWEGGAYPRVAVPTPDSDGSGTSAV+VTLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHYSE
Sbjct: 1 MTRKSNSRVTVSATAVLGVLVGLLTAEGALAQQVGNLTGLSRGYSVNLTGSSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYGLGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPDGNTINIDKTWSALVVSDGLGDIYVADWSDSKILWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDVWEGGAYPRVAVPTPDSDGSGTSAVNVTLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHYSE 490
BLAST of mRNA_Ecto-sp13_S_contig1559.4156.1 vs. uniprot
Match: A0A835ZFA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA9_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.180e-41 Identity = 147/490 (30.00%), Postives = 224/490 (45.71%), Query Frame = 1
Query: 586 ASAQQVGNLTGLSRGYSVNLTG-SSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDASSRDLYAIDDDRSVLTHYTYDGSR--FVVSQTVGGFTCLYG-----LGVAPDGANVYVTDDCLYTVTNFRRDPDTGSL--TFQDELSGDPR--NGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPGGNTINIDKTWSALVVSDGLGDIYVADWSDSKIFWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDV----------WEGGAYPRV-AVP------TPDSDGSGTSAVDV-TLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHY 1965
A A VG L+ S + + T S +NPF + + ASAI VS DG VYVGG+ GGL L R G L + W AS F AL++V+ + ++ D ++ G++ G+ G+FS+ DG LL +++ I A F S+ D Y ID L ++Y + F V Q + L G L ++PDG NVYV D NF RDP TG + + L GDP DG+G S++F+ + L++ +++L R + G L + G + L+ SD D+YV S +I W++ D ++ + WF +P LIA + VY + W+G + R AVP TP + T +V+ TL + S ++IA +++ + EEE AL+A+PNDA+AHNN G+ ++ ++A AE HY
Sbjct: 20 AQAAAVGELSEASTPVAFDFTSLSEASNPFFSKT-SAASAIAVSRDGRNVYVGGDKGGLAWLTRDVATGDLRYQQGWPASAFTTALKAVQHVSISEDDGYMVICGNKADPYGSLGIFSLDVDGTPSLLYQEEIPDIQHALFAPGSATDFYTIDQTNMELRLWSYSSADHGFSVQQAIA----LEGPSPDALAISPDGLNVYVHDSSSAKNFNFARDPATGLVGESPASTLQGDPNAVGSDGIGHWSSMAFSSSAPFAFALETLVGQVTVLSRAVGNGALAVLSKFPVAYDDGAAVACRADAPLLLASDDDVDLYVLGESRGQIGWLQFD---AATHALHANGWFVTGSRPRQLIADAAYEHVYATFAATNTXXXXXXXXXKWKGAHFNREPAVPPTPAPTTPQPTSATTYSVESQTLLLGESADTFNLMLIAV--------HKSVELAQAEEEKFILALQASPNDALAHNNYGHFLQHKRSNYAGAERHY 493
BLAST of mRNA_Ecto-sp13_S_contig1559.4156.1 vs. uniprot
Match: A0A3B9HEV5_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A3B9HEV5_9CHLR) HSP 1 Score: 76.6 bits (187), Expect = 1.640e-10 Identity = 67/229 (29.26%), Postives = 100/229 (43.67%), Query Frame = 1
Query: 790 SLTMTRAWAASDFD-----EALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISA-DGDLQLLQE--------------------DDHRGIIRAGFPDASSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYG---LGVAPDGANVYVTDDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLT 1389
S T T A+ D E L V I ++P GS L T G GVFSI+ G L ++ D + + AG+ +S ++IDD +L + Y +S G T L+ L V PDG ++Y+T ++T F+R+P TGSL+ L + DGL SL T DG +V + DD+I++ +R+ TG+ T
Sbjct: 225 SATGTLAYIEHHIDNTAGVEGLDGVRDIRISPSGSHLYTAGFED---NAIGVFSINGTSGQLSFIRSYVNGLNGVHGIQGATAIAISPDGKHLYCAGWK-GNSVAAFSIDDTTGLLNYLGY------ISNEQHGITSLWSPSDLEVTPDGKHLYITAATSDSLTAFKREPSTGSLSLIGFLKDNTNGIDGLDWASSLEITSDGKHIVVTAAIDDMITVFRRNPSTGSFT 443
BLAST of mRNA_Ecto-sp13_S_contig1559.4156.1 vs. uniprot
Match: A0A5N9ATB2_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=SAR202 cluster bacterium TaxID=2030829 RepID=A0A5N9ATB2_9CHLR) HSP 1 Score: 76.6 bits (187), Expect = 1.800e-10 Identity = 67/229 (29.26%), Postives = 100/229 (43.67%), Query Frame = 1
Query: 790 SLTMTRAWAASDFD-----EALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISA-DGDLQLLQE--------------------DDHRGIIRAGFPDASSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYG---LGVAPDGANVYVTDDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLT 1389
S T T A+ D E L V I ++P GS L T G GVFSI+ G L ++ D + + AG+ +S ++IDD +L + Y +S G T L+ L V PDG ++Y+T ++T F+R+P TGSL+ L + DGL SL T DG +V + DD+I++ +R+ TG+ T
Sbjct: 529 SATGTLAYIEHHIDNTAGVEGLDGVRDIRISPSGSHLYTAGFED---NAIGVFSINGTSGQLSFIRSYVNGLNGVHGIQGATAIAISPDGKHLYCAGWK-GNSVAAFSIDDTTGLLNYLGY------ISNEQHGITSLWSPSDLEVTPDGKHLYITAATSDSLTAFKREPSTGSLSLIGFLKDNTNGIDGLDWASSLEITSDGKHIVVTAAIDDMITVFRRNPSTGSFT 747
BLAST of mRNA_Ecto-sp13_S_contig1559.4156.1 vs. uniprot
Match: A0A382UKF5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382UKF5_9ZZZZ) HSP 1 Score: 72.0 bits (175), Expect = 6.820e-10 Identity = 62/210 (29.52%), Postives = 91/210 (43.33%), Query Frame = 1
Query: 832 EALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISA---------------------DGDLQLLQEDDHRGIIRAGFPDASSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYG---LGVAPDGANVYVTDDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLT 1389
E L V I ++P GS L T GVFS++A G + D + + AG+ +S ++IDD +LT+ Y VS G T L+ L V PDG ++YVT ++T FRRD TGSL+ L + DGL SL DG +V + D+ +++ KR+ TG++T
Sbjct: 30 EGLDDVRDIRLSPSGSHLYTAAFE---ENAIGVFSVNATSGQLSFIGSHINGLDGVHGIQGATAIAISPDGQHLYCAGWK-GNSIAAFSIDDATGLLTYLGY------VSNEQYGVTSLWSPSDLEVTPDGKHLYVTAATSDSLTVFRRDSSTGSLSLIGFLKDNTNGIDGLDWASSLEIMSDGQHIVVTAAVDNTVTVFKRNSSTGSIT 229
BLAST of mRNA_Ecto-sp13_S_contig1559.4156.1 vs. uniprot
Match: A7BT48_9GAMM (Uncharacterized protein n=1 Tax=Beggiatoa sp. PS TaxID=422289 RepID=A7BT48_9GAMM) HSP 1 Score: 65.1 bits (157), Expect = 6.420e-7 Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = 1
Query: 1051 SVLTHYTYDGSRFVVSQTVGGFTCLYGLG------VAPDGANVYVTDDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPGGNTINIDKTWSALVVSDGLGDIYVADWSDSKI 1518
+V + T +G+ ++ V G + GL V+ DG +VY T T+ F R DTG LT + D + DGLG + ++ + DG +V S D+ I+I +RD +TG LT L+ G + + + A+ VS IYVA + D+ +
Sbjct: 21 TVFSRDTTNGNLSLIQTLVDGTPGVTGLNRANSVVVSQDGKHVYTTASSNNTLVLFNRATDTGLLTLIEVYQDDVKGIDGLGGITDVAVSPDGRYVYASGSGDNAIAIFRRDANTGKLTFIDLLRDGIDGIDGLTQAR---AVTVSPQGDHIYVAGFGDNAV 179 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1559.4156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1559.4156.1 >prot_Ecto-sp13_S_contig1559.4156.1 ID=prot_Ecto-sp13_S_contig1559.4156.1|Name=mRNA_Ecto-sp13_S_contig1559.4156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=687bp MHRRRRHCCLRRGKPKTHHQTMRAAAHGGSSSRISFAEGKGIIGRREEDLback to top mRNA from alignment at Ecto-sp13_S_contig1559:2232..14421- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1559.4156.1 ID=mRNA_Ecto-sp13_S_contig1559.4156.1|Name=mRNA_Ecto-sp13_S_contig1559.4156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=12190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1559:2232..14421- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1559:2232..14421- >mRNA_Ecto-sp13_S_contig1559.4156.1 ID=mRNA_Ecto-sp13_S_contig1559.4156.1|Name=mRNA_Ecto-sp13_S_contig1559.4156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2061bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1559:2232..14421- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |