mRNA_Ecto-sp13_S_contig15588.4154.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15588.4154.1
Unique NamemRNA_Ecto-sp13_S_contig15588.4154.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15588.4154.1 vs. uniprot
Match: D7G345_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G345_ECTSI)

HSP 1 Score: 461 bits (1187), Expect = 2.140e-160
Identity = 249/304 (81.91%), Postives = 258/304 (84.87%), Query Frame = 1 
Query:    1 MTNSQSTTFLGRDSRWRPFVALPLSF-RPCWWFCRRWVNELREGGSAWTWTPA------DTVSKKGFQRWLRPPSPIPGLKRKFRSKRSRGGSLDGEVLRALSGVDREGDFVLTPVGSDGTNYAGDLDTSAGTDALDDAGSDNSGASVEEGGVGAEAVAANLRGRGVCERGDHSTGQPKRAIKLARGLSNVARRLTKRSVGSSEAMSLGRDTSYLRAHDAGFDGDRDRSYTGGWSNSPTSPEHGERKLPEDWHVLLASTSPVTPPLASPLPQADPGRPPRSCTSSRRPSPTSSGEILMPGLPPP 891
            M NSQSTT   RD RW P  ALPLS  R C WFC R VN L EGGS+WTWTPA      DTVSKKGFQR LRPPSPIPGLK+KFRSKRSRG SLDGEVL ALSGVDREGDFVLTPVGSDG NYAG LDTSAGTDALDDAGSDNSGASVEEGGV AEAVAANLRG G  +  DHSTGQPKRA KLARGL NVARRLTKRSVGSSEAMS+GRD SYLRAHDA FDG+  RS+TGGWSNSPTSPEHGERKLP+DWH+ L STSPVTPP+ASP PQAD GRPPRS T SRRPSPT SGEILMPGLPPP
Sbjct:    1 MINSQSTTVPPRDPRWCPSEALPLSSCRRCGWFCGRSVNGLGEGGSSWTWTPASSTYHRDTVSKKGFQRLLRPPSPIPGLKKKFRSKRSRGSSLDGEVLHALSGVDREGDFVLTPVGSDGNNYAGGLDTSAGTDALDDAGSDNSGASVEEGGVSAEAVAANLRGGGRGKGEDHSTGQPKRATKLARGLLNVARRLTKRSVGSSEAMSIGRDNSYLRAHDADFDGEGPRSFTGGWSNSPTSPEHGERKLPQDWHLPLTSTSPVTPPMASPPPQADQGRPPRSSTGSRRPSPTRSGEILMPGLPPP 304
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BLAST of mRNA_Ecto-sp13_S_contig15588.4154.1 vs. uniprot
Match: D7FMT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT9_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 9.040e-141
Identity = 219/247 (88.66%), Postives = 226/247 (91.50%), Query Frame = 1 
Query:  157 DTVSKKGFQRWLRPPSPIPGLKRKFRSKRSRGGSLDGEVLRALSGVDREGDFVLTPVGSDGTNYAGDLDTSAGTDALDDAGSDNSGASVEEGGVGAEAVAANLRGRGVCERGDHSTGQPKRAIKLARGLSNVARRLTKRSVGSSEAMSLGRDTSYLRAHDAGFDGDRDRSYTGGWSNSPTSPEHGER--KLPEDWHVLLASTSPVTPPLASPLPQADPGRPPRSCTSSRRPSPTSSGEILMPGLPPP 891
            DTVSKKGFQRWLRPPSPIPGLK+KFRSKRSRG SLDGEVL ALSGVDREGDFVLTPVGSDG NYAGDLDTSAGTDALDDAGSDNSGASVEEGGV AEAVAANLRG G  E  DHSTGQPKRA KLARGLSNVARRLTKRSVGSSEAMSLGRD SYLRAHDA FDGD  RS+TGGWSNSPTSPEHGER  KLP+DWH+ L STSPVTPP+ASP PQAD GRPPRS TSSRRPSPT+SGE+LMPGLPPP
Sbjct:   60 DTVSKKGFQRWLRPPSPIPGLKKKFRSKRSRGSSLDGEVLHALSGVDREGDFVLTPVGSDGNNYAGDLDTSAGTDALDDAGSDNSGASVEEGGVSAEAVAANLRGGGRGEGEDHSTGQPKRATKLARGLSNVARRLTKRSVGSSEAMSLGRDNSYLRAHDADFDGDGPRSFTGGWSNSPTSPEHGERHRKLPQDWHLPLTSTSPVTPPMASPPPQADQGRPPRSSTSSRRPSPTTSGEMLMPGLPPP 306
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BLAST of mRNA_Ecto-sp13_S_contig15588.4154.1 vs. uniprot
Match: A0A6H5JI30_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI30_9PHAE)

HSP 1 Score: 391 bits (1004), Expect = 9.450e-122
Identity = 214/248 (86.29%), Postives = 220/248 (88.71%), Query Frame = 1 
Query:  157 DTVSKKGFQRWLRPPSPIPGLKRKFRSKRSRGGSLDGEVLRALSGVDREGDFVLTPVGSDGTNYAGDLDTSAGTDALDDAGSDNSGASV--EEGGVGAEAVAANLRGRGVCERGDHSTGQPKRAIKLARGLSNVARRLTKRSVGSSEAMSLGRDTSYLRAHDAGFDGDRDRSYTGGWSNSPTSPEHGER--KLPEDWHVLLASTSPVTPPLASPLPQADPGRPPRSCTSSRRPSPTSSGEILMPGLPP 888
            DTVSKKGFQRWLRPPSPIPGLK+KFRSKRSRGGSLDG+VLRALSGVDREGDFVLTPVGSDGTNYAGDLDTSAGTDALDDAGSDNSGA V  EEGGV AEAVAANLRG G  E  D STGQPKR+IKLARGLSNVARRLTKRSVGSSEA        YLRAHDA FDGD DRSYTGGW NSPTSPEHGER  KLP+DWHV L STSPVTPPLASP PQAD GRPPRS TSSRRPSPT+SGE+LMPGLPP
Sbjct:   65 DTVSKKGFQRWLRPPSPIPGLKKKFRSKRSRGGSLDGQVLRALSGVDREGDFVLTPVGSDGTNYAGDLDTSAGTDALDDAGSDNSGAGVGVEEGGVSAEAVAANLRGGGRGEGEDRSTGQPKRSIKLARGLSNVARRLTKRSVGSSEA------NIYLRAHDADFDGDGDRSYTGGWGNSPTSPEHGERHRKLPQDWHVPLTSTSPVTPPLASPPPQADQGRPPRSSTSSRRPSPTTSGEMLMPGLPP 306
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15588.4154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G345_ECTSI2.140e-16081.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMT9_ECTSI9.040e-14188.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI30_9PHAE9.450e-12286.29CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15588contigEcto-sp13_S_contig15588:2342..4124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size891
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000190.1
Cds size891
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462826.2771523-CDS-Ecto-sp13_S_contig15588:2341..24961681462826.2771523-CDS-Ecto-sp13_S_contig15588:2341..2496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15588 2342..2496 +
1681462826.3031383-CDS-Ecto-sp13_S_contig15588:2809..33701681462826.3031383-CDS-Ecto-sp13_S_contig15588:2809..3370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15588 2810..3370 +
1681462826.3175921-CDS-Ecto-sp13_S_contig15588:3949..41241681462826.3175921-CDS-Ecto-sp13_S_contig15588:3949..4124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15588 3950..4124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15588.4154.1prot_Ecto-sp13_S_contig15588.4154.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15588 2342..4124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15588.4154.1

>prot_Ecto-sp13_S_contig15588.4154.1 ID=prot_Ecto-sp13_S_contig15588.4154.1|Name=mRNA_Ecto-sp13_S_contig15588.4154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp
MTNSQSTTFLGRDSRWRPFVALPLSFRPCWWFCRRWVNELREGGSAWTWT
PADTVSKKGFQRWLRPPSPIPGLKRKFRSKRSRGGSLDGEVLRALSGVDR
EGDFVLTPVGSDGTNYAGDLDTSAGTDALDDAGSDNSGASVEEGGVGAEA
VAANLRGRGVCERGDHSTGQPKRAIKLARGLSNVARRLTKRSVGSSEAMS
LGRDTSYLRAHDAGFDGDRDRSYTGGWSNSPTSPEHGERKLPEDWHVLLA
STSPVTPPLASPLPQADPGRPPRSCTSSRRPSPTSSGEILMPGLPPP
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mRNA from alignment at Ecto-sp13_S_contig15588:2342..4124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15588.4154.1 ID=mRNA_Ecto-sp13_S_contig15588.4154.1|Name=mRNA_Ecto-sp13_S_contig15588.4154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15588:2342..4124+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAACTCACAATCCACGACTTTTCTTGGACGGGATTCCCGATGGCG
TCCTTTCGTGGCTCTCCCTCTTTCCTTTCGCCCATGCTGGTGGTTCTGCC
GCCGCTGGGTCAACGAGCTCCGGGAGGGCGGGTCGGCGTGGACCTGGACG
CCCGCGTCGAGCGCCTAGGTGTCGATGAGGGTGTTCGTGTAGTCCCCCGA
AACGGGGTCGATTTCGGTTCCTGGACGGCCGGCGCTACACAAGGCGTCCA
GGCCCACGACGACCCACCCTCCCCGAGCCCGTCGACCCAGCGGCCGCAGA
ATCACCCTTTTATGTGGGGTGGCTGGCTTTATTTGTTATTTGGTTTTGGG
AGGGCATATCGATCTTTCCCACGCTTGAGCACAGAGGTCACAGTCGGCGC
AAATTTCGACAAGTACCCACGAAAGACACGCTTCCATCAACCCCGTATCC
CCGCCCCCCACACGTCAGGGATACCGTGTCCAAGAAGGGGTTCCAGCGTT
GGCTGAGGCCTCCGTCTCCGATACCCGGCTTGAAGAGGAAGTTCCGCAGC
AAGCGCTCGAGAGGAGGTAGCCTTGACGGTGAAGTTCTGCGGGCCCTATC
GGGGGTGGACCGGGAAGGAGACTTTGTACTCACTCCCGTGGGATCCGACG
GCACCAATTATGCCGGTGATTTGGATACAAGCGCTGGCACCGACGCCTTG
GACGATGCTGGTAGTGACAACAGTGGTGCAAGCGTTGAGGAAGGGGGTGT
TGGTGCAGAAGCGGTAGCAGCGAACCTCAGAGGGCGCGGGGTGTGTGAAC
GAGGAGACCACAGCACCGGGCAGCCGAAACGAGCGATCAAGCTCGCGAGG
GGTCTCTCGAACGTGGCCCGGCGGCTCACGAAGCGGTCGGTGGGGTCGTC
GGAGGCGATGAGTTTAGGGAGGGATACTAGCTACTTGCGTGCGCACGATG
CTGGTTTCGACGGCGATAGGGACAGATCGTACACCGGGGGTTGGAGCAAT
AGCCCAACGTCGCCGGAGCATGGCGAGAGGTGCGTACCGCTCTTCACTCA
TACCCTAAGAATTGGTTGCATGGTGTGCTGCGATGTTCCGTTACTTTCAC
CTCCCCAGACAATCAAAAGTGGATTTGTTTCGATGCCTGAAGGCCAGGGA
TTCAATGGAAACGCCTGTCCGAATAGGGAGTGGACTTGAAACGTAATCTA
ATGAACGCTCGCGTGTCAGCATGGGGCTTTTCTCTTCTACCCATGAGCAA
CCCATGAGACTACTCAAAGGAAGGATCAATTAGCGTCGAAGGATCCCATC
ATTTGCTTGGGTGAATAGCGTGCAAGTTGTTGATGCGTAGCCTTGATAAG
GTCAGCAGTGCCGACGGGCTAAGTACACGCCCACACGAGGCGCAGACCCG
AGTACATATTGCTGTCGTCTACCGTTGTTTTTTTGTTTAGGTGCGCACGA
TTCATACTTCCACTCGGGCATTCCATTTTATGTAAGAGCGGTAGGACACG
ATCATGCAAGTTGCTTGTAGCGCCACTCTGAATCCGTACAAATACGCTCA
ACAATGGTGTACTCAACGCCGCCCGTTTTTCTTTCGAATTTCAATCGCTT
CGGCACAGGAAATTGCCCGAAGACTGGCATGTACTGCTCGCGAGCACGAG
CCCCGTGACGCCCCCGCTTGCGTCACCGCTGCCGCAAGCTGACCCAGGCA
GACCTCCTCGCAGCTGCACCAGCAGCCGGCGGCCTTCTCCGACATCAAGC
GGAGAAATATTGATGCCGGGGCTGCCTCCGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15588:2342..4124+

>mRNA_Ecto-sp13_S_contig15588.4154.1 ID=mRNA_Ecto-sp13_S_contig15588.4154.1|Name=mRNA_Ecto-sp13_S_contig15588.4154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15588:2342..4124+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAACTCACAATCCACGACTTTTCTTGGACGGGATTCCCGATGGCG
TCCTTTCGTGGCTCTCCCTCTTTCCTTTCGCCCATGCTGGTGGTTCTGCC
GCCGCTGGGTCAACGAGCTCCGGGAGGGCGGGTCGGCGTGGACCTGGACG
CCCGCGGATACCGTGTCCAAGAAGGGGTTCCAGCGTTGGCTGAGGCCTCC
GTCTCCGATACCCGGCTTGAAGAGGAAGTTCCGCAGCAAGCGCTCGAGAG
GAGGTAGCCTTGACGGTGAAGTTCTGCGGGCCCTATCGGGGGTGGACCGG
GAAGGAGACTTTGTACTCACTCCCGTGGGATCCGACGGCACCAATTATGC
CGGTGATTTGGATACAAGCGCTGGCACCGACGCCTTGGACGATGCTGGTA
GTGACAACAGTGGTGCAAGCGTTGAGGAAGGGGGTGTTGGTGCAGAAGCG
GTAGCAGCGAACCTCAGAGGGCGCGGGGTGTGTGAACGAGGAGACCACAG
CACCGGGCAGCCGAAACGAGCGATCAAGCTCGCGAGGGGTCTCTCGAACG
TGGCCCGGCGGCTCACGAAGCGGTCGGTGGGGTCGTCGGAGGCGATGAGT
TTAGGGAGGGATACTAGCTACTTGCGTGCGCACGATGCTGGTTTCGACGG
CGATAGGGACAGATCGTACACCGGGGGTTGGAGCAATAGCCCAACGTCGC
CGGAGCATGGCGAGAGGAAATTGCCCGAAGACTGGCATGTACTGCTCGCG
AGCACGAGCCCCGTGACGCCCCCGCTTGCGTCACCGCTGCCGCAAGCTGA
CCCAGGCAGACCTCCTCGCAGCTGCACCAGCAGCCGGCGGCCTTCTCCGA
CATCAAGCGGAGAAATATTGATGCCGGGGCTGCCTCCGCCC
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