mRNA_Ecto-sp13_S_contig15582.4152.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15582.4152.1 vs. uniprot
Match: D8LF98_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF98_ECTSI) HSP 1 Score: 594 bits (1532), Expect = 6.080e-211 Identity = 333/360 (92.50%), Postives = 333/360 (92.50%), Query Frame = 1
Query: 1 GGVDPAGGKGGIIDKFSTGRRRLKENIAQKTGKEAVDNSEFEERSQRVADLKEKVGKVRDAMKRQLDCSRALCLACADLGNACSEVGLRDVGFQNAQFQLDEDMRKQLDAAVAKAVESLENKMAPFAELDKMIMSRNKLKLDYDHYMRKVRDLKEKPGSDAAKLSNNEAKLTAARQRLQEATGKLYKGFGYYDAVGGTLCQPEIEMLKQAQQGFFGSAFSVVKGVPARDPQEVAREIESVGKDGMNAPFTLPASEYGSSGGGGLSNMSGMSGAIKDASTRAGGDDSPDRSPASAYVPSASAPWLTGGSSVGGGVAGASPGTGSFKAPXXXXXXXXXXDKHSATADTQPAAAASGWGAGTK 1080
GG DPAGGKGGIIDKFSTGRRRLKENIAQKTGKEAVDNSEFEERSQRVADLKEKVGKVRDAMKRQLDCSRALCLACADLGNACSEVGLRDVGFQNAQFQLDEDMRKQLDAAVAKAVESLENKMAPFAELDKMIMSRNKLKLDYDHYMRKVRDLKEKPGSDAAKLSNNEAKLTAARQRLQEATGKLYKGFGYYDAVGGTLCQPEIEMLKQAQQGFFGSAFSVVKGVPARDPQEVAREIESVGKDGMNAPFTLPASEYGSSGGGGLSNMSGMSGAIKDASTRAGGDDSPDRSPASAYVPSASAPWLTGG XXXXXXXXXX ADTQPAAAASGWGAGTK
Sbjct: 35 GGADPAGGKGGIIDKFSTGRRRLKENIAQKTGKEAVDNSEFEERSQRVADLKEKVGKVRDAMKRQLDCSRALCLACADLGNACSEVGLRDVGFQNAQFQLDEDMRKQLDAAVAKAVESLENKMAPFAELDKMIMSRNKLKLDYDHYMRKVRDLKEKPGSDAAKLSNNEAKLTAARQRLQEATGKLYKGFGYYDAVGGTLCQPEIEMLKQAQQGFFGSAFSVVKGVPARDPQEVAREIESVGKDGMNAPFTLPASEYGSSGGGGLSNMSGMSGAIKDASTRAGGDDSPDRSPASAYVPSASAPWLTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADTQPAAAASGWGAGTK 394
BLAST of mRNA_Ecto-sp13_S_contig15582.4152.1 vs. uniprot
Match: A0A835YV50_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV50_9STRA) HSP 1 Score: 241 bits (614), Expect = 2.720e-72 Identity = 124/238 (52.10%), Postives = 163/238 (68.49%), Query Frame = 1
Query: 31 GIIDKFSTGRRRLKENIAQKTGKEAVDNSEFEERSQRVADLKEKVGKVRDAMKRQLDCSRALCLACADLGNACSEVGLRDVGFQNAQFQLDEDMRKQLDAAVAKAVESLENKMAPFAELDKMIMSRNKLKLDYDHYMRKVRDLKEKPGSDAAKLSNNEAKLTAARQRLQEATGKLYKGFGYYDAVGGTLCQPEIEMLKQAQQGFFGSAFSVVKGVPARDPQEVAREIESVGKDGMNAP 744
GI K + RRR E + QK GKE D+++FE+R + DL KV KVRD+MK LD +RA+ DL NAC + RD F Q QLD+ MR LD +V KA++SL+ K+APF ELD+ + +RN LKLDYDHY+RKVR+LKEK G+DA+K++NNE KL AAR + +AT +YK F YYDAVGG L PE+E K AQ+ F+ +A + VK VP RDP +VA E++ +G+DG N P
Sbjct: 37 GIKGKMAVNRRRFNEKLGQKMGKEGTDDADFEDRHRATQDLHFKVCKVRDSMKALLDATRAMSQRAVDLSNACGDADARDQDFITTQLQLDQAMRSMLDDSVGKALDSLDRKLAPFKELDERVKTRNNLKLDYDHYVRKVRELKEKSGADASKIANNEMKLEAARVAVHKATLSVYKAFNYYDAVGGRLVAPEVEAFKAAQRAFYMAALNCVKDVPLRDPVQVAAEVDRLGEDGSNRP 274
BLAST of mRNA_Ecto-sp13_S_contig15582.4152.1 vs. uniprot
Match: A0A6G0WWC6_9STRA (BAR domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWC6_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 2.150e-7 Identity = 60/258 (23.26%), Postives = 113/258 (43.80%), Query Frame = 1
Query: 31 GIIDKFSTGRRRLKENIAQKTGK-EAVDNSEFEERSQRVADLKEKVGKVRDAMKRQLDCSRALCLACADLGNACSEV-----------GLRDVG------FQNAQFQLDEDMRKQLDAAVAKAV-ESLENKMAPFAELDKMIMSRNKLKLDYDHYMRKVRDLKEKPGSDAAKLSNNEAKLTAARQRLQEATGKLYKGFGYYDAVGGTLCQPEIEMLKQAQQGFFGSAFSVVKGVPARDPQEVAREIESVGKDGMNAPF 747
G++DK + +RR + K GK E D+ E+++ R +L + V + MK + +L C LG + + G++ + F + ++D R+ + ++ V +++ K+ K + R +LKLDYD +RK+R +E +AA + + KL AA+ +L E+T + + GT+ Q E++ +Q Q FF S G P ++ + + + + PF
Sbjct: 15 GLMDKIRSAKRRFIQKALTKIGKAECSDDHEYQQLRDRQLELIDTVEHMLTHMKSFVTTLVSLGYGCTLLGEDMNVIRDNNAVKSPSYGVKPLNDCASNEFSQSMNRIDNAARELAASMLSTTVVANMQTKLDELHGFKKELEHRERLKLDYDSAVRKLRHAREH--REAADVLRRDQKLQAAQAKLAESTALMVAKMKECEGTRGTMLQREVDDFRQMQAQFFQLCVSAFTGPPPPPRHAMSSKADEISQAEATNPF 270
BLAST of mRNA_Ecto-sp13_S_contig15582.4152.1 vs. uniprot
Match: A0A485K280_9STRA (Aste57867_199 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K280_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.090e-5 Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 1
Query: 325 DAAVAKAVESLENKMAPFAELDKMIMSRNKLKLDYDHYMRKVRDLKEKPGSDAAKLSNNEAKLTAARQRLQEATGKLYKGFGYYDAVGGTLCQPEIEMLKQAQQGFFGSAFSVVKGVPARDP--------QEVAREIESVG 723
D V A+ L+ +A ++ +R +LKLD+D Y R+ R L + +A+ + E KL AR + T +LY+ F Y+ T+ E+EM++QA F + V++ +P P +E+ RE++++G
Sbjct: 323 DIVVGGAIRCLDTHIAKIESYRPLMATRAELKLDFDSYDRRARQL-----APSARKARVETKLMEARVAFESCTLQLYRVFARYENERATMLHGELEMVRQALHAFLETQAKVMQ-IPIDPPAAPCMTKEEELFREMKTMG 457 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15582.4152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15582.4152.1 >prot_Ecto-sp13_S_contig15582.4152.1 ID=prot_Ecto-sp13_S_contig15582.4152.1|Name=mRNA_Ecto-sp13_S_contig15582.4152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=364bp GGVDPAGGKGGIIDKFSTGRRRLKENIAQKTGKEAVDNSEFEERSQRVADback to top mRNA from alignment at Ecto-sp13_S_contig15582:603..4085- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15582.4152.1 ID=mRNA_Ecto-sp13_S_contig15582.4152.1|Name=mRNA_Ecto-sp13_S_contig15582.4152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15582:603..4085- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15582:603..4085- >mRNA_Ecto-sp13_S_contig15582.4152.1 ID=mRNA_Ecto-sp13_S_contig15582.4152.1|Name=mRNA_Ecto-sp13_S_contig15582.4152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15582:603..4085- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |