mRNA_Ecto-sp13_S_contig15580.4151.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15580.4151.1
Unique NamemRNA_Ecto-sp13_S_contig15580.4151.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: A0A6H5L6G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.040e-31
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQVLTDIFFRGTLVLVHRDELVQQ 204
            STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQ   ++  RGTLVLVHRDELVQQ
Sbjct:   13 STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQAFPELCRRGTLVLVHRDELVQQ 80          
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: D8LIE3_ECTSI (ResIII domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE3_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.870e-29
Identity = 62/90 (68.89%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQVLT----------------------DIFFRGTLVLVHRDELVQQ 204
            STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQ+ T                      ++  RGTLVLVHRDELVQQ
Sbjct:   10 STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQIKTRDEYANGEGRGRFRCLRQQAFPELCRRGTLVLVHRDELVQQ 99          
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: A0A835YHM4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHM4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.280e-18
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQVLTDIFFRGTLVLVHRDELVQQ 204
            +T +LRPYQ  V+ +   LY QGT R+LVP+ATG+GKT VF+H+P    ++  RGTLVLVHR+ELV+Q
Sbjct:   16 ATVMLRPYQKEVLQQMKALYAQGTHRILVPMATGMGKTTVFSHVPSAFPELAKRGTLVLVHREELVRQ 83          
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: A0A1G4IYC9_9SACH (LANO_0B05380g1_1 n=1 Tax=Lachancea nothofagi CBS 11611 TaxID=1266666 RepID=A0A1G4IYC9_9SACH)

HSP 1 Score: 63.5 bits (153), Expect = 3.850e-10
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQVLTDIFFRGT---LVLVHRDELVQQ 204
            S S LRPYQ   ID+ ++    GT+R+ V +ATG GKTV+F+HL   L  +  R T   L+LVHR EL QQ
Sbjct:   18 SNSFLRPYQQECIDKCIQSITHGTKRIGVSIATGGGKTVIFSHLIDRLRSLSGRDTFRTLILVHRRELAQQ 88          
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: B6K5T8_SCHJY (ATP-dependent DNA helicase Irc3 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K5T8_SCHJY)

HSP 1 Score: 60.5 bits (145), Expect = 4.680e-9
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQVLTDIFFRGT--LVLVHRDELVQQ 204
            ST  LRPYQ   I   ++ + QGTRR+ + LATG GKTVVF+HL   +  I       L+L+HR EL QQ
Sbjct:   13 STFHLRPYQEECIQSVLQSFAQGTRRVAISLATGSGKTVVFSHLIDRVQPIRPNANQCLILLHRKELAQQ 82          
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: A0A1E4TAH9_9ASCO (Uncharacterized protein (Fragment) n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TAH9_9ASCO)

HSP 1 Score: 58.2 bits (139), Expect = 3.050e-8
Identity = 35/66 (53.03%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   13 LRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQVLT--DIFFRGTLVLVHRDELVQQ 204
            LRPYQ   ID  +     GT R+ V LATG GKTV+F+HL    T  D     TLVLVHR ELV Q
Sbjct:    1 LRPYQEKCIDSILTAINNGTNRVGVSLATGAGKTVIFSHLIDRFTVDDPLRSQTLVLVHRKELVFQ 66          
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: A0A1Y2FRL0_PROLT (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FRL0_PROLT)

HSP 1 Score: 58.2 bits (139), Expect = 3.060e-8
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQVLTDIFFRG-TLVLVHRDELVQQ 204
            S   LRPYQ   I   +    +G RR+ V LATG GKTV+FTHL + + +   R  TL+LVHR EL  Q
Sbjct:   35 SAVTLRPYQEECIQSCITAIQEGKRRIAVSLATGSGKTVIFTHLIERVPEEGKRTQTLILVHRKELADQ 103          
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: A0A2G5I4N2_CERBT (Putative ATP-dependent helicase IRC3 n=1 Tax=Cercospora beticola TaxID=122368 RepID=A0A2G5I4N2_CERBT)

HSP 1 Score: 58.2 bits (139), Expect = 3.070e-8
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   13 LRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHL----PQVLTDIFFRGTLVLVHRDELVQQ 204
            LRPYQ   I   +E   +G +RL + LATG GKTV+F+HL    P   TD     TL+L HR ELV+Q
Sbjct:   60 LRPYQQESIQSVLEYIAKGEKRLAISLATGSGKTVIFSHLIAQVPSPTTDA--TQTLILAHRRELVEQ 125          
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: A0A0K1PRU5_9DELT (DNA helicase, phage associated protein n=1 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1PRU5_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 1.070e-7
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   13 LRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQVLTDIFFRGTLVLVHRDELVQQ 204
            LRPYQ   I+  ++   +GTRRLLV L TG GKTVVF+ L ++      R  LVL HR+EL+ Q
Sbjct:    6 LRPYQRDAIEAVLKARREGTRRLLVCLPTGAGKTVVFSQLARLAR----RQVLVLAHREELLTQ 65          
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Match: A5DIK4_PICGU (Uncharacterized protein n=2 Tax=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) TaxID=294746 RepID=A5DIK4_PICGU)

HSP 1 Score: 56.6 bits (135), Expect = 1.070e-7
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHL-PQVLTDIFFRGT--LVLVHRDELVQQ 204
            ST  LR YQ+  ID  +    +G +R  V LATG GKTVVF+HL P +  ++   G+  LVL H++EL++Q
Sbjct:   23 STFTLRDYQNEAIDSVLAALNRGVKRPAVVLATGGGKTVVFSHLLPHIKPNVLSGGSKVLVLAHKEELIKQ 93          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15580.4151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6G6_9PHAE7.040e-3189.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIE3_ECTSI3.870e-2968.89ResIII domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YHM4_9STRA7.280e-1857.35P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1G4IYC9_9SACH3.850e-1049.30LANO_0B05380g1_1 n=1 Tax=Lachancea nothofagi CBS 1... [more]
B6K5T8_SCHJY4.680e-948.57ATP-dependent DNA helicase Irc3 n=1 Tax=Schizosacc... [more]
A0A1E4TAH9_9ASCO3.050e-853.03Uncharacterized protein (Fragment) n=1 Tax=Tortisp... [more]
A0A1Y2FRL0_PROLT3.060e-847.83p-loop containing nucleoside triphosphate hydrolas... [more]
A0A2G5I4N2_CERBT3.070e-848.53Putative ATP-dependent helicase IRC3 n=1 Tax=Cerco... [more]
A0A0K1PRU5_9DELT1.070e-750.00DNA helicase, phage associated protein n=1 Tax=Lab... [more]
A5DIK4_PICGU1.070e-745.07Uncharacterized protein n=2 Tax=Meyerozyma guillie... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15580contigEcto-sp13_S_contig15580:3086..3758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop0
Start0
Seed ortholog score60.1
Seed ortholog evalue4.7e-07
Seed eggNOG ortholog4897.EEB08892
Preferred nameirc3
Model size204
KEGG koko:K17677
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0031974,GO:0031981,GO:0032042,GO:0033676,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
Exons2
EggNOG free text desc.ATP-dependent DNA helicase Irc3
EggNOG OGs2QT4U@2759,38GE0@33154,3MCH3@451866,3NWXY@4751,3QQHS@4890,COG1061@1
Cds size204
COG Functional cat.L
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462826.0802708-CDS-Ecto-sp13_S_contig15580:3085..32441681462826.0802708-CDS-Ecto-sp13_S_contig15580:3085..3244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15580 3086..3244 +
1681462826.092396-CDS-Ecto-sp13_S_contig15580:3713..37581681462826.092396-CDS-Ecto-sp13_S_contig15580:3713..3758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15580 3714..3758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15580.4151.1prot_Ecto-sp13_S_contig15580.4151.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15580 3086..3758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15580.4151.1

>prot_Ecto-sp13_S_contig15580.4151.1 ID=prot_Ecto-sp13_S_contig15580.4151.1|Name=mRNA_Ecto-sp13_S_contig15580.4151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
STSVLRPYQSSVIDRAVELYGQGTRRLLVPLATGLGKTVVFTHLPQVLTD
IFFRGTLVLVHRDELVQQ
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mRNA from alignment at Ecto-sp13_S_contig15580:3086..3758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15580.4151.1 ID=mRNA_Ecto-sp13_S_contig15580.4151.1|Name=mRNA_Ecto-sp13_S_contig15580.4151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=673bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15580:3086..3758+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGACTAGCGTGCTTCGCCCGTACCAGTCCTCGGTGATAGACCGGGCGGT GGAGCTATACGGACAAGGAACCCGGCGCCTGTTGGTTCCGCTGGCAACGG GCCTCGGCAAAACAGTGGTCTTCACGCACCTTCCCCAGGTACTTACAGAT ATTTTTTTTGTCCTTCCTGTCACCATTCGTTGCTATAATAGTACGTCCCT CGGAGTTCCTTGAGGGGGACTACAGCTGTTTGAACGAGACCGAGCACTGG ACGAAACGCAAGCTGAAGCAGCTTCTGTTGTCCATGTTCCTTTCCTTCGG CGGTTTCCCATTTTTTGTGTCTTGCGAGGGGTCGCCCCTTCCCAATTTCT CGGCATATACCAGGATGATACGTATATCCAGAGGTTGGCCGAAGGTGGAC GTTGTTCCTGTCACCATTGCTTGACTTGTCGTACAGCTCTTCTATTTTGA TGCAACCGCCACAAAGCCCCGCTGTTAGGATGGCCTGAGCCGCTTTGCAA AGCGATGTTTCCCCATTTTCCATGTGCCCTTTGGGCGATTGATGAAAACC AGAGATTCAAATCCTAACGGCGAGGGTCGCGGGCGTTGCCGATGCTTGCG CCAGCAGGCGTTTCCGGAGCTGTGCCAGCGGGGAACGTTAGTGCTGGTGC ATCGCGACGAGCTCGTGCAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15580:3086..3758+

>mRNA_Ecto-sp13_S_contig15580.4151.1 ID=mRNA_Ecto-sp13_S_contig15580.4151.1|Name=mRNA_Ecto-sp13_S_contig15580.4151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15580:3086..3758+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGACTAGCGTGCTTCGCCCGTACCAGTCCTCGGTGATAGACCGGGCGGT
GGAGCTATACGGACAAGGAACCCGGCGCCTGTTGGTTCCGCTGGCAACGG
GCCTCGGCAAAACAGTGGTCTTCACGCACCTTCCCCAGGTACTTACAGAT
ATTTTTTTTCGGGGAACGTTAGTGCTGGTGCATCGCGACGAGCTCGTGCA
ACAG
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