prot_Ecto-sp13_S_contig1558.4150.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1558.4150.1
Unique Nameprot_Ecto-sp13_S_contig1558.4150.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length679
Homology
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: D7G0H0_ECTSI (F-box domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H0_ECTSI)

HSP 1 Score: 1134 bits (2933), Expect = 0.000e+0
Identity = 603/680 (88.68%), Postives = 616/680 (90.59%), Query Frame = 0
Query:    1 MRMDRDPLQDVCGVYNSSSANGNISGIDESKKMAGESSAAPAAAEAGEGDGAIGGQGRMLLALPDAMLSEILGNLGVKGLGRAGCASRGLRDTADDERLWVSLWEGPLPGGFLRGEKAAHVALWLLAKGEVEQMRVAVSEPSSPRRTACRRRVGEATTTDGGHGQGHGGAHGEEGPAGGGTVAVAAGFPVHISCMAIDGAVIATAAGPEITVWDMEGASAPRARFKVSGHGSVTCLLLRSGTLLAGDNSGYLRSYDVSVPGGGRPLHEIRTHAGRVTAIDAFTLPVGSTATADSPLAELPGGGSGXXXXXXXXXXXXXXXXXXXXQQGRWDQGHGLGEGWQQEESESGEGAQPLLSQRHLYGNSGASSSPPPPHASRGAAGEGAGSRQ-HGNRGGTGALGESPASAAGLGAELNRLPRRGSPHGGGTGEPLSRLGKRQGYAGRGQAYEPAGTAVGGGTRVRGRGRGIDRAGWAFDDGNNHGAPNVWSEEEGGEENGPFVGRRPDDGKDGAGGEQREVLLFTASDDGTAKAWDARSGRFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL 679
            MRMDRDPLQDVCG  NSSSA GN SG+DES+KMAG   AA AAAEAGEGDGAIGGQGRMLLALPDAMLSEILGNL VKGLGRAGCA RGLRDTADDERLWVSLWEGPLPGGFLRGEKAAHVALWLLAKGEVEQ RVAVSEPSSP RTA RRRVGEAT T GG  QGHGGA GEEGPAGGG VAVAAGFPVHISCMAI+GAVIATAAGPEITVWDMEGASAPRARFKVSGHGSVTCLLLRSGTLLAGDNSGYLRSYDVSVPGGGRPLHEIR HA RVTAID+FTLPVG+TA ADSP+AE PGGGSG                    Q+GRWDQGH  GEGWQ+EESESGEGAQPLL QRHLYGNSGASS  PPPHAS GAAGEGAGSRQ HG  GGTGALGESPASAA LG E NRL RRGS HGGGTGEPLSRLGKRQGYAGRGQAYEPAG AVGGGTR++GRGRGIDRAGWAFDDGNNHGAPN WSEE+GGEEN PFVG+RPDDGK GAGGEQREVLLFTASDDGTAKAWDARSGRFV LY GH+RGVTCLQATLTESYGPVLVTGG DSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL
Sbjct:    4 MRMDRDPLQDVCGSDNSSSAYGNKSGVDESEKMAGGCPAA-AAAEAGEGDGAIGGQGRMLLALPDAMLSEILGNLDVKGLGRAGCACRGLRDTADDERLWVSLWEGPLPGGFLRGEKAAHVALWLLAKGEVEQTRVAVSEPSSPTRTASRRRVGEATATGGGRDQGHGGARGEEGPAGGGAVAVAAGFPVHISCMAINGAVIATAAGPEITVWDMEGASAPRARFKVSGHGSVTCLLLRSGTLLAGDNSGYLRSYDVSVPGGGRPLHEIRAHADRVTAIDSFTLPVGNTAAADSPVAEQPGGGSGGCYRSPAAEGEGGAWGRGGGQRGRWDQGHXWGEGWQEEESESGEGAQPLLPQRHLYGNSGASSYSPPPHASWGAAGEGAGSRQQHGIGGGTGALGESPASAADLGVEFNRL-RRGSSHGGGTGEPLSRLGKRQGYAGRGQAYEPAGAAVGGGTRMQGRGRGIDRAGWAFDDGNNHGAPNAWSEEKGGEENDPFVGQRPDDGKGGAGGEQREVLLFTASDDGTAKAWDARSGRFVCLYAGHTRGVTCLQATLTESYGPVLVTGGGDSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL 681          
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: F0WWM1_9STRA (Uncharacterized protein AlNc14C325G10633 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWM1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.100e-9
Identity = 54/167 (32.34%), Postives = 73/167 (43.71%), Query Frame = 0
Query:  515 EVLLFTASDDGTAKAWDARSG-RFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPR-LARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL 679
            E ++F+AS DGT +AWD  S  R +G Y G       L    +   G  +V  G+D    VW + T R L+ L    G VI        V      R+ I    DR + +W + KG     L     C        L+M G  IV+   D  +R WD RT LCV++L
Sbjct:  238 EKVIFSASSDGTIRAWDLASNFRSIGEYRGLGTAYPLLCVRASRD-GEFVVGTGSDRKSFVWRVGTARVLQTLTGHKGKVIAAAFSSDSV------REVITGSSDRSLRIWDIVKGSNVHTLGCTSSCND------LEMTGGMIVSAHQDGSVRFWDRRTKLCVKQL 391          
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A072VPK7_MEDTR (Putative transcription factor WD40-like family n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072VPK7_MEDTR)

HSP 1 Score: 70.5 bits (171), Expect = 3.730e-9
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 0
Query:  518 LFTASDDGTAKAWDARSGRFVGLYGGH---SRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGP-WIVTCSGDYVIRLWDSRTGLCVR 677
            + T SDD T + W+ +SG  + +  GH   + G+TCL    T +   + +TG  D +V +  +TTGR +  L + +  +         VG   +     + G D+ +++W +       LAR+  CEH+  +     +G  ++ T S D  +RLWDSR+G CVR
Sbjct:  221 ICTGSDDATLRIWNPKSGESIHVVRGHPYHTEGITCLAINSTST---IALTGSVDGSVHIVNITTGRVVSTLPSHSSSI-------ECVGFAPSGSWAAIGGMDK-MTIWDVEHS----LARS-ICEHEYGVTCSTWLGTSYVATGSNDGAVRLWDSRSGECVR 368          
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A024GCZ8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCZ8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.370e-9
Identity = 51/167 (30.54%), Postives = 76/167 (45.51%), Query Frame = 0
Query:  515 EVLLFTASDDGTAKAWDARSG-RFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPR-LARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL 679
            + +LF+AS DGT +AWD  S  R +G Y G       L   +++  G  +V  G+D    VW + T R  + L    G V+            ++ R+ I    DR + +W + KG     L+    C        L+M G  IV+   D  +R WD RT LCV++L
Sbjct:  238 DKVLFSASSDGTIRAWDLASNFRSIGEYRGLGTAYPLLCVRVSKD-GEFVVGTGSDRKSFVWRVGTARVFQTLTGHKGKVV------AAAFSSESVREVITGSSDRSLRIWDIVKGSSIHTLSCTSSCND------LEMTGGMIVSAHQDGSVRFWDRRTKLCVKQL 391          
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A835YXW5_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.140e-7
Identity = 57/224 (25.45%), Postives = 92/224 (41.07%), Query Frame = 0
Query:  509 AGGEQREVLLFTASDDGTAKAWDARSGRFVGLYGGHSRGVTCLQATLTESY-----------------GPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRK----GQRPRLARA-----RFCEHQRPIRRLDM-------VGPWIVTCSGDY--------------------VIRLWDSRTGLCVREL 679
            AG +   + L   S    A+A  A  G+ + +Y GHS+ V+CLQA+ +                    G +LV+G  D  V VW+ ++G CL+ L           G    V C+Q    T+VVG DR ++ W L       ++  L+ A     ++C       +L +       VG   +  + D+                    ++R+WD R+G CVRE+
Sbjct:  134 AGCDDGVIRLIIISPRCIAQALGAMDGQLLQVYAGHSKAVSCLQASHSGGXXXXXXXXXXXXXAEPGAGTLLVSGSCDGTVRVWDCSSGTCLDVLRQEPCEEYMHDGLSQSVRCMQVCGSTVVVGADRSIAQWRLGSYGSAAEKAGLSAAAVCLRKYCSFMHGRAQLCVWQLGSASVGNGALAPTHDWFRSRAHSCAPARVRRAHRALLVRVWDVRSGRCVREV 357          
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A8E2J4G8_9APHY (WD40 repeat-like protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2J4G8_9APHY)

HSP 1 Score: 60.1 bits (144), Expect = 1.140e-5
Identity = 54/174 (31.03%), Postives = 75/174 (43.10%), Query Frame = 0
Query:  521 ASDDGTAKAWDARSGRFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKL------------ETGAGLVINPGGPGPRVGCLQAYRDTIVVGE-DRHVSVW------SLRKGQRPRLA---RARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRT 672
            A DD  +KAW+ R  R  G    HS  V CL+   +      ++TG  D  + VW L TG+CL               +    L    GG    V   +  R  +V G  D  + VW      S  +G+ P +A   RA    H   +  L + G WIV+CS D +IR+WD +T
Sbjct:  289 ALDDKESKAWEPRVRRISG----HSDSVYCLEFDSSR-----IITGSRDRTIKVWSLKTGKCLATFAXXXXXXXXXXXDKDWDLQDQDGGDN-NVDVARKRRGFLVSGSSDCTICVWDMYTGSSTDEGEEPEVAADVRAVLRGHTGGVLDLRIDGKWIVSCSKDALIRVWDRKT 452          
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A6A4VLT3_AMPAM (WD repeat-containing protein 86 n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VLT3_AMPAM)

HSP 1 Score: 57.8 bits (138), Expect = 4.310e-5
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 0
Query:  513 QREVLLFTASDDGTAKAWDARSGRFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWE 576
            +R+VLLFT S DG A+A+DA+SG+   +Y GH RG+TC+     + Y     TG  D  + VW+
Sbjct:  321 RRQVLLFTCSSDGDARAYDAKSGKQKRVYSGHQRGITCMCVVDKKLY-----TGADDGQLRVWD 379          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G0H0_ECTSI0.000e+088.68F-box domain-containing protein n=2 Tax=Ectocarpus... [more]
F0WWM1_9STRA3.100e-932.34Uncharacterized protein AlNc14C325G10633 n=1 Tax=A... [more]
A0A072VPK7_MEDTR3.730e-929.88Putative transcription factor WD40-like family n=1... [more]
A0A024GCZ8_9STRA5.370e-930.54Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A835YXW5_9STRA6.140e-725.45Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A8E2J4G8_9APHY1.140e-531.03WD40 repeat-like protein n=1 Tax=Obba rivulosa Tax... [more]
A0A6A4VLT3_AMPAM4.310e-543.75WD repeat-containing protein 86 n=3 Tax=Amphibalan... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 220..256
e-value: 160.0
score: 3.1
coord: 534..576
e-value: 0.033
score: 23.3
coord: 456..531
e-value: 490.0
score: 0.0
coord: 632..669
e-value: 0.82
score: 17.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 538..575
e-value: 0.014
score: 16.3
coord: 652..669
e-value: 0.13
score: 13.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 541..585
score: 11.143
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 165..293
e-value: 5.7E-8
score: 33.8
coord: 607..679
e-value: 6.5E-11
score: 43.4
coord: 504..606
e-value: 1.2E-15
score: 59.0
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 517..679
coord: 192..631
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 656..670
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 563..577
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 518..532
IPR001810F-box domainPROSITEPS50181FBOXcoord: 57..103
score: 9.18
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 517..679
score: 18.642
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 187..280
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 517..678
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 56..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1558contigEcto-sp13_S_contig1558:9924..16133 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1558.4150.1mRNA_Ecto-sp13_S_contig1558.4150.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1558 9915..16133 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1558.4150.1 ID=prot_Ecto-sp13_S_contig1558.4150.1|Name=mRNA_Ecto-sp13_S_contig1558.4150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=679bp
MRMDRDPLQDVCGVYNSSSANGNISGIDESKKMAGESSAAPAAAEAGEGD
GAIGGQGRMLLALPDAMLSEILGNLGVKGLGRAGCASRGLRDTADDERLW
VSLWEGPLPGGFLRGEKAAHVALWLLAKGEVEQMRVAVSEPSSPRRTACR
RRVGEATTTDGGHGQGHGGAHGEEGPAGGGTVAVAAGFPVHISCMAIDGA
VIATAAGPEITVWDMEGASAPRARFKVSGHGSVTCLLLRSGTLLAGDNSG
YLRSYDVSVPGGGRPLHEIRTHAGRVTAIDAFTLPVGSTATADSPLAELP
GGGSGGCYGGGAAAGGSGVRGGGGGQQGRWDQGHGLGEGWQQEESESGEG
AQPLLSQRHLYGNSGASSSPPPPHASRGAAGEGAGSRQHGNRGGTGALGE
SPASAAGLGAELNRLPRRGSPHGGGTGEPLSRLGKRQGYAGRGQAYEPAG
TAVGGGTRVRGRGRGIDRAGWAFDDGNNHGAPNVWSEEEGGEENGPFVGR
RPDDGKDGAGGEQREVLLFTASDDGTAKAWDARSGRFVGLYGGHSRGVTC
LQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPG
PRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLD
MVGPWIVTCSGDYVIRLWDSRTGLCVREL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR001810F-box_dom
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf
IPR036047F-box-like_dom_sf