mRNA_Ecto-sp13_S_contig1558.4150.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: D7G0H0_ECTSI (F-box domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H0_ECTSI) HSP 1 Score: 1138 bits (2944), Expect = 0.000e+0 Identity = 605/683 (88.58%), Postives = 619/683 (90.63%), Query Frame = 1
Query: 1 IGTMRMDRDPLQDVCGVYNSSSANGNISGIDESKKMAGESSAAPAAAEAGEGDGAIGGQGRMLLALPDAMLSEILGNLGVKGLGRAGCASRGLRDTADDERLWVSLWEGPLPGGFLRGEKAAHVALWLLAKGEVEQMRVAVSEPSSPRRTACRRRVGEATTTDGGHGQGHGGAHGEEGPAGGGTVAVAAGFPVHISCMAIDGAVIATAAGPEITVWDMEGASAPRARFKVSGHGSVTCLLLRSGTLLAGDNSGYLRSYDVSVPGGGRPLHEIRTHAGRVTAIDAFTLPVGSTATADSPLAELPGGGSGXXXXXXXXXXXXXXXXXXXXQQGRWDQGHGLGEGWQQEESESGEGAQPLLSQRHLYGNSGASSSPPPPHASRGAAGEGAGSRQ-HGNRGGTGALGESPASAAGLGAELNRLPRRGSPHGGGTGEPLSRLGKRQGYAGRGQAYEPAGTAVGGGTRVRGRGRGIDRAGWAFDDGNNHGAPNVWSEEEGGEENGPFVGRRPDDGKDGAGGEQREVLLFTASDDGTAKAWDARSGRFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL 2046
+GTMRMDRDPLQDVCG NSSSA GN SG+DES+KMAG AA AAAEAGEGDGAIGGQGRMLLALPDAMLSEILGNL VKGLGRAGCA RGLRDTADDERLWVSLWEGPLPGGFLRGEKAAHVALWLLAKGEVEQ RVAVSEPSSP RTA RRRVGEAT T GG QGHGGA GEEGPAGGG VAVAAGFPVHISCMAI+GAVIATAAGPEITVWDMEGASAPRARFKVSGHGSVTCLLLRSGTLLAGDNSGYLRSYDVSVPGGGRPLHEIR HA RVTAID+FTLPVG+TA ADSP+AE PGGGSG Q+GRWDQGH GEGWQ+EESESGEGAQPLL QRHLYGNSGASS PPPHAS GAAGEGAGSRQ HG GGTGALGESPASAA LG E NRL RRGS HGGGTGEPLSRLGKRQGYAGRGQAYEPAG AVGGGTR++GRGRGIDRAGWAFDDGNNHGAPN WSEE+GGEEN PFVG+RPDDGK GAGGEQREVLLFTASDDGTAKAWDARSGRFV LY GH+RGVTCLQATLTESYGPVLVTGG DSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL
Sbjct: 1 MGTMRMDRDPLQDVCGSDNSSSAYGNKSGVDESEKMAGGCPAA-AAAEAGEGDGAIGGQGRMLLALPDAMLSEILGNLDVKGLGRAGCACRGLRDTADDERLWVSLWEGPLPGGFLRGEKAAHVALWLLAKGEVEQTRVAVSEPSSPTRTASRRRVGEATATGGGRDQGHGGARGEEGPAGGGAVAVAAGFPVHISCMAINGAVIATAAGPEITVWDMEGASAPRARFKVSGHGSVTCLLLRSGTLLAGDNSGYLRSYDVSVPGGGRPLHEIRAHADRVTAIDSFTLPVGNTAAADSPVAEQPGGGSGGCYRSPAAEGEGGAWGRGGGQRGRWDQGHXWGEGWQEEESESGEGAQPLLPQRHLYGNSGASSYSPPPHASWGAAGEGAGSRQQHGIGGGTGALGESPASAADLGVEFNRL-RRGSSHGGGTGEPLSRLGKRQGYAGRGQAYEPAGAAVGGGTRMQGRGRGIDRAGWAFDDGNNHGAPNAWSEEKGGEENDPFVGQRPDDGKGGAGGEQREVLLFTASDDGTAKAWDARSGRFVCLYAGHTRGVTCLQATLTESYGPVLVTGGGDSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL 681
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: F0WWM1_9STRA (Uncharacterized protein AlNc14C325G10633 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWM1_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 3.130e-9 Identity = 54/167 (32.34%), Postives = 73/167 (43.71%), Query Frame = 1
Query: 1552 EVLLFTASDDGTAKAWDARSG-RFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPR-LARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL 2046
E ++F+AS DGT +AWD S R +G Y G L + G +V G+D VW + T R L+ L G VI V R+ I DR + +W + KG L C L+M G IV+ D +R WD RT LCV++L
Sbjct: 238 EKVIFSASSDGTIRAWDLASNFRSIGEYRGLGTAYPLLCVRASRD-GEFVVGTGSDRKSFVWRVGTARVLQTLTGHKGKVIAAAFSSDSV------REVITGSSDRSLRIWDIVKGSNVHTLGCTSSCND------LEMTGGMIVSAHQDGSVRFWDRRTKLCVKQL 391
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A072VPK7_MEDTR (Putative transcription factor WD40-like family n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072VPK7_MEDTR) HSP 1 Score: 70.5 bits (171), Expect = 3.750e-9 Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 1
Query: 1561 LFTASDDGTAKAWDARSGRFVGLYGGH---SRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGP-WIVTCSGDYVIRLWDSRTGLCVR 2040
+ T SDD T + W+ +SG + + GH + G+TCL T + + +TG D +V + +TTGR + L + + + VG + + G D+ +++W + LAR+ CEH+ + +G ++ T S D +RLWDSR+G CVR
Sbjct: 221 ICTGSDDATLRIWNPKSGESIHVVRGHPYHTEGITCLAINSTST---IALTGSVDGSVHIVNITTGRVVSTLPSHSSSI-------ECVGFAPSGSWAAIGGMDK-MTIWDVEHS----LARS-ICEHEYGVTCSTWLGTSYVATGSNDGAVRLWDSRSGECVR 368
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A024GCZ8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCZ8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 5.410e-9 Identity = 51/167 (30.54%), Postives = 76/167 (45.51%), Query Frame = 1
Query: 1552 EVLLFTASDDGTAKAWDARSG-RFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPR-LARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVREL 2046
+ +LF+AS DGT +AWD S R +G Y G L +++ G +V G+D VW + T R + L G V+ ++ R+ I DR + +W + KG L+ C L+M G IV+ D +R WD RT LCV++L
Sbjct: 238 DKVLFSASSDGTIRAWDLASNFRSIGEYRGLGTAYPLLCVRVSKD-GEFVVGTGSDRKSFVWRVGTARVFQTLTGHKGKVV------AAAFSSESVREVITGSSDRSLRIWDIVKGSSIHTLSCTSSCND------LEMTGGMIVSAHQDGSVRFWDRRTKLCVKQL 391
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A835YXW5_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW5_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 6.180e-7 Identity = 57/224 (25.45%), Postives = 92/224 (41.07%), Query Frame = 1
Query: 1534 AGGEQREVLLFTASDDGTAKAWDARSGRFVGLYGGHSRGVTCLQATLTESY-----------------GPVLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRK----GQRPRLARA-----RFCEHQRPIRRLDM-------VGPWIVTCSGDY--------------------VIRLWDSRTGLCVREL 2046
AG + + L S A+A A G+ + +Y GHS+ V+CLQA+ + G +LV+G D V VW+ ++G CL+ L G V C+Q T+VVG DR ++ W L ++ L+ A ++C +L + VG + + D+ ++R+WD R+G CVRE+
Sbjct: 134 AGCDDGVIRLIIISPRCIAQALGAMDGQLLQVYAGHSKAVSCLQASHSGGXXXXXXXXXXXXXAEPGAGTLLVSGSCDGTVRVWDCSSGTCLDVLRQEPCEEYMHDGLSQSVRCMQVCGSTVVVGADRSIAQWRLGSYGSAAEKAGLSAAAVCLRKYCSFMHGRAQLCVWQLGSASVGNGALAPTHDWFRSRAHSCAPARVRRAHRALLVRVWDVRSGRCVREV 357
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A8E2J4G8_9APHY (WD40 repeat-like protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2J4G8_9APHY) HSP 1 Score: 60.1 bits (144), Expect = 1.140e-5 Identity = 54/174 (31.03%), Postives = 75/174 (43.10%), Query Frame = 1
Query: 1570 ASDDGTAKAWDARSGRFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWELTTGRCLEKL------------ETGAGLVINPGGPGPRVGCLQAYRDTIVVGE-DRHVSVW------SLRKGQRPRLA---RARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRT 2025
A DD +KAW+ R R G HS V CL+ + ++TG D + VW L TG+CL + L GG V + R +V G D + VW S +G+ P +A RA H + L + G WIV+CS D +IR+WD +T
Sbjct: 289 ALDDKESKAWEPRVRRISG----HSDSVYCLEFDSSR-----IITGSRDRTIKVWSLKTGKCLATFAXXXXXXXXXXXDKDWDLQDQDGGDN-NVDVARKRRGFLVSGSSDCTICVWDMYTGSSTDEGEEPEVAADVRAVLRGHTGGVLDLRIDGKWIVSCSKDALIRVWDRKT 452
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: A0A6A4VLT3_AMPAM (WD repeat-containing protein 86 n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VLT3_AMPAM) HSP 1 Score: 57.8 bits (138), Expect = 4.340e-5 Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 1546 QREVLLFTASDDGTAKAWDARSGRFVGLYGGHSRGVTCLQATLTESYGPVLVTGGADSAVIVWE 1737
+R+VLLFT S DG A+A+DA+SG+ +Y GH RG+TC+ + Y TG D + VW+
Sbjct: 321 RRQVLLFTCSSDGDARAYDAKSGKQKRVYSGHQRGITCMCVVDKKLY-----TGADDGQLRVWD 379
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Match: UPI001B86B956 (WD40-repeat-containing domain protein n=1 Tax=Suillus paluster TaxID=48578 RepID=UPI001B86B956) HSP 1 Score: 57.4 bits (137), Expect = 8.580e-5 Identity = 47/178 (26.40%), Postives = 81/178 (45.51%), Query Frame = 1
Query: 1558 LLFTASDDGTAKAWDARSGRFVGLYGG-HSRGVT--CLQATLTESYGP--------------VLVTGGADSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVV-GEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCV 2037
+LFT S D T + WD R+ R + G H V C+ + +S P +LV+GG+D V+VW+L R ++ L+ V+ C++ +V +DR V ++ +P+ F H+ + + +VG IV+ SGD +R+W++ TG +
Sbjct: 383 VLFTGSKDRTVREWDLRTDRVRRVVGELHESSVLSLCISSDFAKSGTPDGEEALADGPGNAGLLVSGGSDRRVVVWDLGKDRLVKVLQDHLDSVL----------CVRVDSGRLVTCSKDRTVRTYAF-PSLKPQFV---FRAHRAAVNAVSVVGDVIVSGSGDRSVRVWNANTGALI 546 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1558.4150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1558.4150.1 >prot_Ecto-sp13_S_contig1558.4150.1 ID=prot_Ecto-sp13_S_contig1558.4150.1|Name=mRNA_Ecto-sp13_S_contig1558.4150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=679bp MRMDRDPLQDVCGVYNSSSANGNISGIDESKKMAGESSAAPAAAEAGEGDback to top mRNA from alignment at Ecto-sp13_S_contig1558:9915..16133+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1558.4150.1 ID=mRNA_Ecto-sp13_S_contig1558.4150.1|Name=mRNA_Ecto-sp13_S_contig1558.4150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1558:9915..16133+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1558:9915..16133+ >mRNA_Ecto-sp13_S_contig1558.4150.1 ID=mRNA_Ecto-sp13_S_contig1558.4150.1|Name=mRNA_Ecto-sp13_S_contig1558.4150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2037bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1558:9915..16133+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |