mRNA_Ecto-sp13_S_contig15576.4146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15576.4146.1
Unique NamemRNA_Ecto-sp13_S_contig15576.4146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15576.4146.1 vs. uniprot
Match: A0A6H5L7H3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7H3_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.130e-37
Identity = 77/85 (90.59%), Postives = 77/85 (90.59%), Query Frame = 2 
Query:    2 VIREAKRKAATLENFEEAMERTGGETGAQRKKTKTDGGRTGGGHNATKLHRLLGMFKGLPIDVMSTKEALTAARQLVDKLYVGSG 256
            VIREAKRKAATLENFEEAMERTGG TGAQRKKTKTD    GGGHNATKLHRLL MFKGLPIDVMS KEALTA RQLVDKLYVGSG
Sbjct:  744 VIREAKRKAATLENFEEAMERTGGGTGAQRKKTKTDEEGAGGGHNATKLHRLLDMFKGLPIDVMSPKEALTATRQLVDKLYVGSG 828
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15576.4146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7H3_9PHAE3.130e-3790.59DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15576contigEcto-sp13_S_contig15576:2239..3253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score110.9
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog2880.D8LDL8
Preferred nameMSH2
Model size315
KEGG koko:K08735
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006298,GO:0006301,GO:0006310,GO:0006311,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0012501,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0032135,GO:0032137,GO:0032138,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033554,GO:0034641,GO:0035556,GO:0035639,GO:0035822,GO:0036094,GO:0040020,GO:0042623,GO:0042771,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045128,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0080090,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0110029,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:2000241,GO:2000242
Exons2
EggNOG free text desc.negative regulation of reciprocal meiotic recombination
EggNOG OGsCOG0249@1,KOG0219@2759
Cds size204
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.620395-UTR-Ecto-sp13_S_contig15576:2238..22941681462825.620395-UTR-Ecto-sp13_S_contig15576:2238..2294Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15576 2239..2294 -
1681462825.6550345-UTR-Ecto-sp13_S_contig15576:3198..32531681462825.6550345-UTR-Ecto-sp13_S_contig15576:3198..3253Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15576 3199..3253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.6309617-CDS-Ecto-sp13_S_contig15576:2294..23811681462825.6309617-CDS-Ecto-sp13_S_contig15576:2294..2381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15576 2295..2381 -
1681462825.64024-CDS-Ecto-sp13_S_contig15576:3081..31981681462825.64024-CDS-Ecto-sp13_S_contig15576:3081..3198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15576 3082..3198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15576.4146.1prot_Ecto-sp13_S_contig15576.4146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15576 2295..3198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15576.4146.1

>prot_Ecto-sp13_S_contig15576.4146.1 ID=prot_Ecto-sp13_S_contig15576.4146.1|Name=mRNA_Ecto-sp13_S_contig15576.4146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MERTGGETGAQRKKTKTDGGRTGGGHNATKLHRLLGMFKGLPIDVMSTKE
ALTAARQLVDKLYVGSG*
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mRNA from alignment at Ecto-sp13_S_contig15576:2239..3253-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15576.4146.1 ID=mRNA_Ecto-sp13_S_contig15576.4146.1|Name=mRNA_Ecto-sp13_S_contig15576.4146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1015bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15576:2239..3253- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCATCCGAGAGGCGAAGCGCAAGGCGGCCACGTTGGAAAACTTTGAGG
AGGCCATGGAAAGGACCGGGGGGGAGACGGGGGCACAGCGGAAGAAAACC
AAGACGGACGGGGGGAGGACCGGCGGAGGGCACAACGCCACCAAGTTGCA
CCGTCTGCTGGGCATGTTCAAGGTCAGCTTGGGCGCTCTCGGTTTGTTGT
TGTTGTTGTTTTTGTTGTTGATTGCAGGATACAGGTATTGTGGTCGATCT
AGATGAAATATACTTTTCTTGATTGTAACCTTTTTCGATCGGCGGTTGCA
GTTGCTGGTCGTTTCGTGTCATCGGTTACGGCTCTCCATGGACATGTGCA
TATGCAGGTTGTTCCCCCTGCCCCGCCGTACATTGGTACAATCCTACACA
TGAATTTTGAAACGTCTTGCCGATAGCCGAGGCGGTCCAGTTAGTATTGG
GGTATCGTAGTACCCTGACCACGTGTTACGAGTATTTCCCTGGTCATGTC
ATACATACTGGCATCATCCCATGTATTTTGGCGTAATTCCAACAAGCTGG
ACGCTCGTTTCACACTGTTGTGCGTGCTTGGACCCTTCAGCCAGGGTCAT
CAAGGACTCATCAAGTACTCATCAAGGACTATCCGGCCTCCACAATCCCG
CCATGTGATGTTACGATACCCCCCCCCTCAAATATGCTGCTGCTACCGTG
CATCCCGCCCCCCGCGCGCCCTGGACCGGCGACACCCCGGAAGGCATATC
GCTCCGTCCCGGCATTAAAAGGAATGCGAGGTCTATGATCTAACGACTAC
CGCACGGCATTCGCTTACATGAGTACACACCCCCGCCCACGTCCCCGCCC
TTTGTTTATGCTTTCCTTCTAGGGGTTACCAATCGACGTCATGAGTACAA
AGGAGGCATTAACTGCCGCGAGGCAGCTCGTCGACAAGCTCTACGTCGGC
TCCGGGTGATTGGACGATAGATGGTCTCTCTGACAGAAAGAGCGAATGGT
GGTTTATGATGAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15576:2239..3253-

>mRNA_Ecto-sp13_S_contig15576.4146.1 ID=mRNA_Ecto-sp13_S_contig15576.4146.1|Name=mRNA_Ecto-sp13_S_contig15576.4146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15576:2239..3253- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAAGGACCGGGGGGGAGACGGGGGCACAGCGGAAGAAAACCAAGAC
GGACGGGGGGAGGACCGGCGGAGGGCACAACGCCACCAAGTTGCACCGTC
TGCTGGGCATGTTCAAGGGGTTACCAATCGACGTCATGAGTACAAAGGAG
GCATTAACTGCCGCGAGGCAGCTCGTCGACAAGCTCTACGTCGGCTCCGG
GTGA
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