mRNA_Ecto-sp13_S_contig15575.4144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15575.4144.1
Unique NamemRNA_Ecto-sp13_S_contig15575.4144.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15575.4144.1 vs. uniprot
Match: D7G0C5_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.070e-6
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 LAHLMFGVDGGGKATGPFEREIPNGKVCGRGTK 99
            LAHLMFG+DGGGKATGPFEREI NGKV   G +
Sbjct:  295 LAHLMFGMDGGGKATGPFEREILNGKVSLSGAE 327
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15575.4144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0C5_ECTSI4.070e-678.79Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15575contigEcto-sp13_S_contig15575:5..509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size505
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.5211325-UTR-Ecto-sp13_S_contig15575:4..161681462825.5211325-UTR-Ecto-sp13_S_contig15575:4..16Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15575 5..16 +
1681462825.539482-UTR-Ecto-sp13_S_contig15575:379..5091681462825.539482-UTR-Ecto-sp13_S_contig15575:379..509Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15575 380..509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.5301735-CDS-Ecto-sp13_S_contig15575:16..3791681462825.5301735-CDS-Ecto-sp13_S_contig15575:16..379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15575 17..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15575.4144.1prot_Ecto-sp13_S_contig15575.4144.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15575 17..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15575.4144.1

>prot_Ecto-sp13_S_contig15575.4144.1 ID=prot_Ecto-sp13_S_contig15575.4144.1|Name=mRNA_Ecto-sp13_S_contig15575.4144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MFGVDGGGKATGPFEREIPNGKVCGRGTKYCRVAVEHLQVLVQFFRNSTV
CSGAFPSQVFIFRTKTECCSRILCVVLAQLSPRKTMTAITRKLVFLRPTG
NVCDWLCKPIWFAELVPSWC*
back to top

mRNA from alignment at Ecto-sp13_S_contig15575:5..509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15575.4144.1 ID=mRNA_Ecto-sp13_S_contig15575.4144.1|Name=mRNA_Ecto-sp13_S_contig15575.4144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15575:5..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAGCGCACCTGATGTTCGGCGTGGACGGGGGCGGCAAGGCAACGGGGCC
GTTCGAGCGTGAGATTCCCAATGGCAAGGTGTGCGGCAGAGGAACCAAGT
ACTGCAGAGTGGCAGTCGAGCATTTGCAAGTACTTGTTCAGTTTTTCAGG
AACTCCACGGTTTGTTCGGGTGCGTTTCCTTCTCAAGTTTTTATTTTTCG
AACCAAGACCGAATGTTGTTCGAGAATTCTGTGTGTCGTGCTCGCCCAAC
TCTCCCCGCGAAAAACGATGACAGCAATAACGAGGAAGCTTGTTTTTTTG
AGGCCTACCGGCAATGTGTGTGATTGGCTTTGCAAGCCAATCTGGTTTGC
TGAGCTGGTCCCGAGTTGGTGCTGAATCCGCGCCGTGCGTGACGTCGCAG
TAGGTGATCATCCTGCGCCCTTTCTGATCTCACTAGCGCTCGTCGTATAT
TTTTTCTCATTGATTGCTTGTTGCGCCGTTGATTGCTAGACTTGATACCG
CCCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15575:5..509+

>mRNA_Ecto-sp13_S_contig15575.4144.1 ID=mRNA_Ecto-sp13_S_contig15575.4144.1|Name=mRNA_Ecto-sp13_S_contig15575.4144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15575:5..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGCGTGGACGGGGGCGGCAAGGCAACGGGGCCGTTCGAGCGTGA
GATTCCCAATGGCAAGGTGTGCGGCAGAGGAACCAAGTACTGCAGAGTGG
CAGTCGAGCATTTGCAAGTACTTGTTCAGTTTTTCAGGAACTCCACGGTT
TGTTCGGGTGCGTTTCCTTCTCAAGTTTTTATTTTTCGAACCAAGACCGA
ATGTTGTTCGAGAATTCTGTGTGTCGTGCTCGCCCAACTCTCCCCGCGAA
AAACGATGACAGCAATAACGAGGAAGCTTGTTTTTTTGAGGCCTACCGGC
AATGTGTGTGATTGGCTTTGCAAGCCAATCTGGTTTGCTGAGCTGGTCCC
GAGTTGGTGCTGA
back to top