mRNA_Ecto-sp13_S_contig15573.4142.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15573.4142.1
Unique NamemRNA_Ecto-sp13_S_contig15573.4142.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: A0A6H5JRC2_9PHAE (Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.740e-30
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGGCPCLESKAMTEA 177
            ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVD GRP GCCRG SGGCPCLESKAMT A
Sbjct:  148 ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDAGRPAGCCRGGSGGCPCLESKAMTAA 206
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 7.870e-30
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGGCPCLESKAMTEAT 180
            ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGR  GCCRGDSGGCPCLESKA T +T
Sbjct:  148 ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRRAGCCRGDSGGCPCLESKAETAST 207
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.310e-18
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGG-CPCLESKA 165
            AT A+IE+ +DGNLCRCTGYRPILDAAKSL  D   P GCCRG +GG CPC+ +KA
Sbjct:  136 ATVADIEESMDGNLCRCTGYRPILDAAKSLASDARAPQGCCRGSAGGGCPCMAAKA 191
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.930e-15
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGGCPCLE 156
            A+A  +E+ +DGNLCRCTGYRP+LDAAK+L   G R  GCCRG  G CPC E
Sbjct:  186 ASADFLEENMDGNLCRCTGYRPLLDAAKTLLGPGARGAGCCRGGKGSCPCQE 237
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: A0A7S3H3P9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3P9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.470e-14
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDG---GRPTGCCRGDSGGCPCLESKAMTEAT 180
            AT  EIE  LDGNLCRCTGYRPILDAA+SL  +      P GCC+G+ G CPC E+  +   T
Sbjct:  156 ATPHEIESSLDGNLCRCTGYRPILDAARSLSNNKESHAPPAGCCKGNGGKCPCAETLKVESTT 218
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: A0A3R7FYU6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FYU6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.190e-12
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 TAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGGCP 147
            T  EIE G+DGNLCRCTGYRPILDAAKS GVD G     C+G   GCP
Sbjct:  118 TMEEIEHGMDGNLCRCTGYRPILDAAKSFGVDSGEAH--CKGTCPGCP 163
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: A0A2A6CQ10_PRIPA (FAD-binding PCMH-type domain-containing protein n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6CQ10_PRIPA)

HSP 1 Score: 70.1 bits (170), Expect = 1.630e-12
Identity = 34/63 (53.97%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 TAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGGCPCLESKAMTEATSAPE 192
            TA EI   L GNLCRCTGYRPIL+A +S     G   GCC G  GGCPC E+K        PE
Sbjct:  104 TAEEIRSALVGNLCRCTGYRPILEALESFSKSSG---GCCMGGKGGCPCKEAKGEGSKEKTPE 163
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: A0A5D6XJE5_9STRA (Uncharacterized protein n=3 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJE5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.230e-12
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 TAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGGCP 147
            T  +IE GLDGNLCRCTGYRPILDAAKS G D   P   C+G+  GCP
Sbjct:  160 TMEDIEHGLDGNLCRCTGYRPILDAAKSFGSDA--PHATCKGECDGCP 205
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: A0A8K1C448_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C448_PYTOL)

HSP 1 Score: 67.8 bits (164), Expect = 1.060e-11
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 TAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGGCP 147
            T  EIE G+DGNLCRCTGYRPILDAAKS G D       C+GD  GCP
Sbjct:  168 TMEEIEHGMDGNLCRCTGYRPILDAAKSFGADA--LDSHCKGDCPGCP 213
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BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Match: H3F5R4_PRIPA (Gad-3 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=H3F5R4_PRIPA)

HSP 1 Score: 66.6 bits (161), Expect = 2.710e-11
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    4 TAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGGCPCLESKA 165
            TA EI   L GNLCRCTGYRPIL+A +S     G   GCC G  GGCPC + K+
Sbjct:  134 TADEIRSALVGNLCRCTGYRPILEALESFARPSG---GCCMGGKGGCPCKDGKS 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15573.4142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRC2_9PHAE5.740e-3093.22Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G4V3_ECTSI7.870e-3091.67Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A836C8N1_9STRA1.310e-1869.64Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
W7TFQ7_9STRA5.930e-1563.46Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S3H3P9_9STRA1.470e-1457.14Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A3R7FYU6_9STRA1.190e-1268.75Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2A6CQ10_PRIPA1.630e-1253.97FAD-binding PCMH-type domain-containing protein n=... [more]
A0A5D6XJE5_9STRA2.230e-1266.67Uncharacterized protein n=3 Tax=Pythium brassicum ... [more]
A0A8K1C448_PYTOL1.060e-1166.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3F5R4_PRIPA2.710e-1157.41Gad-3 n=2 Tax=Pristionchus pacificus TaxID=54126 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15573contigEcto-sp13_S_contig15573:1338..3583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score118.6
Seed ortholog evalue1e-24
Seed eggNOG ortholog2880.D7G4V3
Model size192
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Exons3
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
Cds size192
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.4205997-CDS-Ecto-sp13_S_contig15573:1337..13671681462825.4205997-CDS-Ecto-sp13_S_contig15573:1337..1367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15573 1338..1367 -
1681462825.4429739-CDS-Ecto-sp13_S_contig15573:2018..21251681462825.4429739-CDS-Ecto-sp13_S_contig15573:2018..2125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15573 2019..2125 -
1681462825.4528246-CDS-Ecto-sp13_S_contig15573:3528..35831681462825.4528246-CDS-Ecto-sp13_S_contig15573:3528..3583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15573 3529..3583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15573.4142.1prot_Ecto-sp13_S_contig15573.4142.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15573 1338..3583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15573.4142.1

>prot_Ecto-sp13_S_contig15573.4142.1 ID=prot_Ecto-sp13_S_contig15573.4142.1|Name=mRNA_Ecto-sp13_S_contig15573.4142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
ATAAEIEDGLDGNLCRCTGYRPILDAAKSLGVDGGRPTGCCRGDSGGCPC
LESKAMTEATSAPE
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mRNA from alignment at Ecto-sp13_S_contig15573:1338..3583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15573.4142.1 ID=mRNA_Ecto-sp13_S_contig15573.4142.1|Name=mRNA_Ecto-sp13_S_contig15573.4142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15573:1338..3583- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACCGCTGCGGAGATCGAGGATGGATTGGACGGTAATCTCTGCCGTTG
CACAGGTATAAAAGCATTGAATGCCTACTGTAGTTTGATGGATCATCTTC
AGAGAGTGGTTTGCGATTATCCGAGACGTGTACATTTTCTTTCCATCGCA
CTCGCATTTCGGTCGGTATCCCCGTTCGTCCTTTTGCTGTTTGTGACGGT
TTAGACGTTTTTGGACAGCGGGTGCCCAGCAGAGTCTGTCGCCGCTCTGA
TGACGATTCGCGTGTGTTCATCAGGTGCAACGTAGGGCTTAGAGATACGT
GCCGTTGTTATTGGCTTGACGGGCATTCGCGGAGATCAACGTGCTCCTAC
TAGTCGTACGCCTCGGGATCCTTTATCAGCCCTATTAGCGATTGATGTAT
TCCCATCTCCGTCGATAGCCGTGGCGCGCAAGGTGGTGCAACCCCTTGCT
TCTATATTTCCCGCGGGGAAGACGCCTCTTTCAAGGAAGACAGCTGATCC
CCTTGCTGTAGTGTCTGTTCGGGGATCGACATGTTTGAGGGCATTCATTG
CCTCCGCATGGGCCGCCTTAACCGCAGTACCAGCGAATGCTCTTGTCGAA
AGCTGGAAGGCAATTTACATTTTTTTTAGCACATGATGATTGTTCTCATT
CTTGCTATCTCCGTCACTTGTCGAGGTAATGCTATAATCGGTGCGCGTTA
CCTTTGTGCGACAGTGTTGTGGGATTGTAGTTCTTAGGGCGGTGTTGTGC
TGAACCATTTGGGCCTTCGTCGATGGAATTGACAGCACAGATTTTGAGTT
TCTTGTTGTCTTGATCACGTGTGGTAATCATCGCTCGAAGCTGCCTCCTA
TCGATCGACAGGGCTCCGATCCGGGGCCATAGAGATCGTCATGTCTTTCG
CGATGCGCGCCCCAATTTCCTTTTTTGCGAGATTGGTTCAGTAATTACGG
CTCCCGAAGCGCGCCGTATCGATGGTTCGTCAGTGTGTTCGTTGATGGTG
GTCTGCTGTTTTGCTATTTTGGAGCGTGGATGGGCAATAACGTTCCGGTG
CAAGGCGGTGGTGGGGCTGACCAGACACGCTGCCCATATCGTGCAAGCTA
CGGCCCACTGTTCCGGATTGGAGAAACGAAATGTTCCAGCGTAGGAAGGA
AAACTGTTCCCGCGTCCGTGAATTTGTTGTCGCGAGATGTCTTCAGCGGC
CTTGCAGAGGGCAATGCCGCCTTGCTCGTCCACACGGTCGCGGTCACATG
CCCGAAACCCACGCACATGCCACGAGTCCTTTTACACGGGGCATTCGGAC
TTTGAGGCGAACTCACGTTCCTGCTGGCCGGGTCGTGTGCCCTATAGCAG
GCATGGCGCAAAGCCGATTCCGCCTCTTGTACAGTGCAGGTACTACTTCG
TACGTGTTTTCTTGTTGGTTGACTGACTATGGAAGCGGCGTTTCACTTGC
GTCTGAAGGCTATCGGCCTATTCTGGACGCTGCCAAAAGCCTCGGCGTGG
ACGGTGGAAGGCCTACCGGGTGCTGCCGTGGCGATAGCGGCGGGTGCCCT
TGCTTGGAGTCCAAGGTGGGTTACGGCGGCAGCCACGAGAGGTTGCACAC
GCTGCTGTCTTTGTATATACACTTTTCTCATTGCTGTGTACCTATACTCG
AAGTATTTCTTTGATTAGGTGGCGAAATTGACCCATGCACTCGTAACTGG
ACTACAGCCGACACAACAAACATCTAGCGCCGGGTGGATTCGTGGTATCC
CCCCACTTCTTTTAGTATAGCATGAGCCATTTGTTGAGGACAAACACATG
AGTTGTCGAGATGCTGGCAGCGCCAGGCGGCGCGTGGATTTTATGTGAGG
GCAATCAGACCGCCCTCTCCAATGGGTTCTGGTTCCGTATTTGTTTCTTC
CTGATCTGGAACTGGCGTTCGACAGCTGATTACTTCAATAAAAGATTTCT
TTTCCCCATGACGTTATTCCTCATGTGTGCCTTATCAGCTCGATCTTGGC
CAGCACACGCCATTCCCGCATGCTGCTGCCATTGTTTGGGTCGGTTCTGG
AACGGTCTTTGTCTTCCCGTTCCACCTTGGCCTGAACCCACAAGTGCCTT
GCCGGCTGCTTGCTAGGGTTAATGGCGTAACATACGCACCATGCTTCGCC
TCTTTGGTGCCCGTGGCGGGTTGTGCTTCTTTGGCCACCAACGCTGCTCC
CCTGGTCTGTACACAGGCGATGACAGAGGCCACGAGCGCTCCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15573:1338..3583-

>mRNA_Ecto-sp13_S_contig15573.4142.1 ID=mRNA_Ecto-sp13_S_contig15573.4142.1|Name=mRNA_Ecto-sp13_S_contig15573.4142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15573:1338..3583- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACCGCTGCGGAGATCGAGGATGGATTGGACGGTAATCTCTGCCGTTG
CACAGGCTATCGGCCTATTCTGGACGCTGCCAAAAGCCTCGGCGTGGACG
GTGGAAGGCCTACCGGGTGCTGCCGTGGCGATAGCGGCGGGTGCCCTTGC
TTGGAGTCCAAGGCGATGACAGAGGCCACGAGCGCTCCCGAG
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