mRNA_Ecto-sp13_S_contig15571.4141.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: D8LJZ5_ECTSI (ND11 homolog, NADH dehydrogenase (Ubiquinone) subunit 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ5_ECTSI) HSP 1 Score: 113 bits (282), Expect = 6.930e-28 Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1
Query: 1 RFRRSAFVFPPPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMDEL 174
R +RSAFVFPPPGIAR+DWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMDEL
Sbjct: 458 RPQRSAFVFPPPGIAREDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMDEL 515
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: A0A2G9R9W8_LITCT (Molybdopterin domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9R9W8_LITCT) HSP 1 Score: 59.7 bits (143), Expect = 3.060e-10 Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 RFRRSAFVFPPPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMDEL 174
R +R+ PPG+AR+DWKI+RA+ E G+TLPY D + + R+Q + P + D++
Sbjct: 24 RAQRTLTAVSPPGVAREDWKIIRAISELAGITLPYDDQDSVRARLQEVSPNLVRYDDV 81
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: F6Z1V0_XENTR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial n=11 Tax=Xenopus TaxID=8353 RepID=F6Z1V0_XENTR) HSP 1 Score: 59.3 bits (142), Expect = 7.890e-9 Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 1 RFRRSAFVFPPPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMDEL 174
R +R+ PPG+AR+DW+I+RA+ E GVTLPY D + + ER+Q + P + D++
Sbjct: 559 RAQRTFVAVTPPGMAREDWRIIRAISELAGVTLPYEDHDGVRERLQEVSPNLVRYDDV 616
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: A0A8C5QU91_9ANUR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5QU91_9ANUR) HSP 1 Score: 58.5 bits (140), Expect = 1.480e-8 Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 1 RFRRSAFVFPPPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMDEL 174
R +R+ PPG+AR+DW+I+RAL E G+TLPY D +E+R++ + P + DE+
Sbjct: 602 RAQRTYVAVTPPGLAREDWRILRALSEVAGITLPYEDHNGIEKRLEEVSPNLVRYDEV 659
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: A0A8C5QTY4_9ANUR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5QTY4_9ANUR) HSP 1 Score: 58.5 bits (140), Expect = 1.480e-8 Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 1 RFRRSAFVFPPPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMDEL 174
R +R+ PPG+AR+DW+I+RAL E G+TLPY D +E+R++ + P + DE+
Sbjct: 611 RAQRTYVAVTPPGLAREDWRILRALSEVAGITLPYEDHNGIEKRLEEVSPNLVRYDEV 668
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: R7VL76_CAPTE (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VL76_CAPTE) HSP 1 Score: 58.2 bits (139), Expect = 2.020e-8 Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 1 RFRRSAFVFPPPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVP 150
R +++ PPG+AR+DWKI+RAL E G+TLPY D E+ ER++ + P
Sbjct: 607 RAQQTNMAVVPPGLAREDWKIIRALSELCGLTLPYDDIHELRERMEEISP 656
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: A0A642V538_9ASCO (Uncharacterized protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642V538_9ASCO) HSP 1 Score: 58.2 bits (139), Expect = 2.020e-8 Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 31 PPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMDEL 174
PPG+AR+DWKI+RA+GE++GV+LPY D E+ R+ + P L+ D L
Sbjct: 617 PPGVAREDWKILRAVGEYLGVSLPYEDVYEVRSRLAEIAPNLLSHDVL 664
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: A0A1R1PKD8_ZANCU (NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial (Fragment) n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PKD8_ZANCU) HSP 1 Score: 56.2 bits (134), Expect = 3.110e-8 Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query: 1 RFRRSAFVFPPPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMDEL 174
R + + V PPG AR+DWKI+RAL EF TLPYSD ++ R+ + P + D L
Sbjct: 54 RAQLTRAVLSPPGAAREDWKIIRALSEFADFTLPYSDISQLRSRMADVSPTLVEYDSL 111
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: A0A397TJ23_9GLOM (NADH-ubiquinone oxidoreductase 78 kDa subunit n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TJ23_9GLOM) HSP 1 Score: 57.4 bits (137), Expect = 3.770e-8 Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 28 PPPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPLTLNMD 168
PPPG AR+DWKI+RAL E VGVTLPY D + R+ + P + D
Sbjct: 615 PPPGAAREDWKIIRALSEVVGVTLPYDDIFSLRNRMSDIAPHLIRYD 661
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Match: UPI00026591DC (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026591DC) HSP 1 Score: 56.6 bits (135), Expect = 7.060e-8 Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query: 10 RSAFVFP---PPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVP 150
R+ FP PPG+AR+DWKI+RAL EF GV LPY + EE+ R+ + P
Sbjct: 597 RTQQTFPAVTPPGLAREDWKIIRALSEFAGVGLPYDNIEELRGRMSEIAP 646 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15571.4141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15571.4141.1 >prot_Ecto-sp13_S_contig15571.4141.1 ID=prot_Ecto-sp13_S_contig15571.4141.1|Name=mRNA_Ecto-sp13_S_contig15571.4141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp RFRRSAFVFPPPGIARQDWKIVRALGEFVGVTLPYSDDEEMEERVQTLVPback to top mRNA from alignment at Ecto-sp13_S_contig15571:1810..1983+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15571.4141.1 ID=mRNA_Ecto-sp13_S_contig15571.4141.1|Name=mRNA_Ecto-sp13_S_contig15571.4141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15571:1810..1983+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15571:1810..1983+ >mRNA_Ecto-sp13_S_contig15571.4141.1 ID=mRNA_Ecto-sp13_S_contig15571.4141.1|Name=mRNA_Ecto-sp13_S_contig15571.4141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15571:1810..1983+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |