mRNA_Ecto-sp13_S_contig15570.4140.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15570.4140.1
Unique NamemRNA_Ecto-sp13_S_contig15570.4140.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15570.4140.1 vs. uniprot
Match: D8LH53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH53_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 5.460e-64
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    1 ETEYVSIQDQLLGYITINFKVTPNFSLNLAKLDNQFDTKNIPSLISVVSADSKTLGHRIGAFQGALQVLQSIVLDMQRQGGIGAIAGKQLSVILDQASSAQGIELFEDLLWDM 339
            ETEYVSIQDQLLGYITINFKVTPNFSLNLAKLDNQFDTKNIPSLISVVSADSKTLGHRIGAFQGALQVLQSIVLDMQRQGGIGAIAGKQLSVILDQASSAQGIELFEDLLWDM
Sbjct:  107 ETEYVSIQDQLLGYITINFKVTPNFSLNLAKLDNQFDTKNIPSLISVVSADSKTLGHRIGAFQGALQVLQSIVLDMQRQGGIGAIAGKQLSVILDQASSAQGIELFEDLLWDM 219
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BLAST of mRNA_Ecto-sp13_S_contig15570.4140.1 vs. uniprot
Match: A0A835YSM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM4_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.130e-45
Identity = 78/113 (69.03%), Postives = 100/113 (88.50%), Query Frame = 1 
Query:    1 ETEYVSIQDQLLGYITINFKVTPNFSLNLAKLDNQFDTKNIPSLISVVSADSKTLGHRIGAFQGALQVLQSIVLDMQRQGGIGAIAGKQLSVILDQASSAQGIELFEDLLWDM 339
            E+EYV+ QD+LLGY+T+ F+V  NF L L KL+NQ+DTKN+P+L+SVVSADSKTLGHR+GAFQ ALQ+LQS+V ++QR   +G+++ KQLSVIL+QASSAQG+ELFEDLLWDM
Sbjct:  103 ESEYVTPQDELLGYVTVTFRVNLNFDLALRKLENQYDTKNLPALMSVVSADSKTLGHRVGAFQTALQILQSVVAELQRVSALGSVSAKQLSVILNQASSAQGVELFEDLLWDM 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15570.4140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH53_ECTSI5.460e-64100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSM4_9STRA2.130e-4569.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15570contigEcto-sp13_S_contig15570:1294..2752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size340
Hectar predicted targeting categoryother localisation
Exons3
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.3397083-CDS-Ecto-sp13_S_contig15570:1293..13531681462825.3397083-CDS-Ecto-sp13_S_contig15570:1293..1353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15570 1294..1353 +
1681462825.3508968-CDS-Ecto-sp13_S_contig15570:2098..23261681462825.3508968-CDS-Ecto-sp13_S_contig15570:2098..2326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15570 2099..2326 +
1681462825.3614526-CDS-Ecto-sp13_S_contig15570:2701..27521681462825.3614526-CDS-Ecto-sp13_S_contig15570:2701..2752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15570 2702..2752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15570.4140.1prot_Ecto-sp13_S_contig15570.4140.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15570 1294..2752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15570.4140.1

>prot_Ecto-sp13_S_contig15570.4140.1 ID=prot_Ecto-sp13_S_contig15570.4140.1|Name=mRNA_Ecto-sp13_S_contig15570.4140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
ETEYVSIQDQLLGYITINFKVTPNFSLNLAKLDNQFDTKNIPSLISVVSA
DSKTLGHRIGAFQGALQVLQSIVLDMQRQGGIGAIAGKQLSVILDQASSA
QGIELFEDLLWDM
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mRNA from alignment at Ecto-sp13_S_contig15570:1294..2752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15570.4140.1 ID=mRNA_Ecto-sp13_S_contig15570.4140.1|Name=mRNA_Ecto-sp13_S_contig15570.4140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15570:1294..2752+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACGGAATACGTGTCGATCCAGGACCAACTGCTAGGGTACATCACGAT
CAATTTCAAGGTGGGTGGACACTACTAGATTAACAATGGTCAAGGAGGCG
ATGTCGATGCTTGAACCACTAGTATTTGCTCATCCGGAACTGCGGCTCGT
CCGAGTACGTCGTTACAATCATTTTGATGGGATATTCATGGTCGGGTGAG
ATCAGGTAGGGTGCAATTACCTGTGCTCGACGCCTTGGCCACGTGCATGC
ACCAACTCTGGTCCCCTGTCGGTATGATTGCACGGAACACTCTTTTGAAC
GTCGTGTCGACGTGTCTGTACCCCGTTCGTATGTACCCCAAGGTTCTTCT
TGGTCTGCTTGATTCTCTAAAACCAACTACCAGGTACATATTATCTCGGC
CATGGAGGTCGGTTCACGACCCTACAGGGCTATGTACGTTTCTGATAGAG
AAAACAATGTTCATCCAAATATGAAACGTTTACTGCCCACGCTCCGGTGG
GTCTTTGCAGGCCATGCCATGCTTCCTACAAATCCTCGTTCTATACATGT
AGTGGAGGTGAAAAATGAGGGATGGAAGCTCTTCCGACACGTGTACCTGG
GATTCCTGTCTCAGTCACTCTCGAATCCGGAATCTTTTGAACGAGAACAC
ACTCCGTATGCGCGATAGCTCACAACCTGCCAAGAGTCTGTGTTTCGTGT
CTATCTACCCCCAAACATGCATCGCTTCAGGAATGGCACGAAAAAACGAA
CGATTGTGATGAGGCAAACAAACGCTCACACGAAAACACGTACTTCGTGT
GACAGGTCACGCCAAACTTTTCCCTAAACTTGGCTAAGCTAGACAACCAG
TTCGACACCAAGAATATCCCGTCGCTCATCAGCGTGGTATCGGCAGACTC
CAAGACTCTGGGGCATCGTATTGGCGCGTTCCAAGGGGCGTTGCAGGTCT
TGCAGTCAATCGTCCTGGACATGCAGAGGCAGGGAGGGATTGGCGCCATC
GCCGGGAAGCAGCTCAGCGTCATCCTCGACCAGGTTTGGTCAACACTGCT
TCGATCCTCCCTCGAATTTCTCTCTCTCTAACTGTTTTTTTGCCTTGACG
TTCGCCAGACCCCTCCTGAAGAATCGACCTAGATACGAAAGCGGCATCGC
TGGATTATCGAACGACCAGTCTCAACGAGAGCAAAACTCTTATAATTCAA
ACAAGAGGGTAGTCATCACCGGCGACACCGAAACGGTTGGTTGCATCAGC
CTCAAGAAGGAAGGCAACAAATTCTTTCTGGTAGAGGGCAACCACGCGCA
TCGAGAAACGAGTGAGCGAACATCAACGACCTCGCATAAGCCCACCCACC
CGCCCATCCATCCTGCACTCCCCTTGGACACATTTGACTATAATATTATG
CAAAAAAGGCTTCTTCGGCTCAAGGGATTGAGCTGTTCGAAGACCTCTTG
TGGGATATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15570:1294..2752+

>mRNA_Ecto-sp13_S_contig15570.4140.1 ID=mRNA_Ecto-sp13_S_contig15570.4140.1|Name=mRNA_Ecto-sp13_S_contig15570.4140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15570:1294..2752+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACGGAATACGTGTCGATCCAGGACCAACTGCTAGGGTACATCACGAT
CAATTTCAAGGTCACGCCAAACTTTTCCCTAAACTTGGCTAAGCTAGACA
ACCAGTTCGACACCAAGAATATCCCGTCGCTCATCAGCGTGGTATCGGCA
GACTCCAAGACTCTGGGGCATCGTATTGGCGCGTTCCAAGGGGCGTTGCA
GGTCTTGCAGTCAATCGTCCTGGACATGCAGAGGCAGGGAGGGATTGGCG
CCATCGCCGGGAAGCAGCTCAGCGTCATCCTCGACCAGGCTTCTTCGGCT
CAAGGGATTGAGCTGTTCGAAGACCTCTTGTGGGATATG
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