mRNA_Ecto-sp13_S_contig1557.4139.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1557.4139.1
Unique Name	mRNA_Ecto-sp13_S_contig1557.4139.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: D7G234_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G234_ECTSI)

HSP 1 Score: 522 bits (1344), Expect = 2.660e-182
Identity = 278/292 (95.21%), Postives = 283/292 (96.92%), Query Frame = 1

Query:    1 MKSTMVLTLLAFGNTQAFFVSAPMSRRTGATAATGKSSVSRAEDWAGFARRRSAGLCMATNSELDQSAEYVKAELARVQEEYEANRKAKMKEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDVKMPKPDSSVPK 876
            MK TMVLTLLAFGNT+AF VSAP+S RT A AA G SSV RAEDWAGFARRRSAGLCMATNSELDQSAEYVKAELARVQEEYEANRKAK+KEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHA+NVVPLFTEED AVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKG+GLLDVKMPKPDSSVPK
Sbjct:    1 MKLTMVLTLLAFGNTRAFLVSAPLSGRTAAAAAMGTSSVCRAEDWAGFARRRSAGLCMATNSELDQSAEYVKAELARVQEEYEANRKAKIKEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAINVVPLFTEEDLAVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGRGLLDVKMPKPDSSVPK 292

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: A0A836CJ14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ14_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.730e-63
Identity = 124/238 (52.10%), Postives = 166/238 (69.75%), Query Frame = 1

Query:  184 SELDQSAEYVKAELARVQEEYEANRKAKMKEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASIDT-KGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDVKMPKPDSSVPK*SNTPR 894
            S LD  A+YVK +L   +  YEA R+A   +  +++  RGD AV PL+ L    +L+++G V+ +   +GVKASVYAVYD +  L+YIGVSR +QQSLRL LAR P+ T+  +VQ+IT PSRSLLE+IK+ W  ENG  P GN   A QA WE  ++V PL TEED+  +   +EKG+ED  +K IA RFE   +EI+E RGVKE++RFDPKLKG+GLLD+  P PD+SVP  ++TP+
Sbjct:   44 SNLDADADYVKQQLKLKEAAYEAKRRADAAQSAKRS--RGDTAVDPLSSLPMIPYLNEEGLVSDVGAARGVKASVYAVYDATPALQYIGVSRSVQQSLRLHLARCPELTHSVRVQHITTPSRSLLEVIKDEWCAENGGAPPGNDGGAEQARWEMPMDVKPLMTEEDKEKLMTAREKGREDSAIKAIARRFEAAKVEIMEARGVKENMRFDPKLKGQGLLDLWQPGPDTSVP--TSTPK 277

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: A0A4D9CSA1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSA1_9STRA)

HSP 1 Score: 198 bits (504), Expect = 5.520e-56
Identity = 117/247 (47.37%), Postives = 168/247 (68.02%), Query Frame = 1

Query:  151 RRSAGLCMATNSELDQSAEYVKAELARVQEEYEANRKAKMKEQTRQAAARGDAA--VTPLADLEFHSFLDKDGKV--ASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGK-EDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDVKMPK-PDSSVP 873
            R++A L   T++ LD  A++VKAELAR ++EY+A+ KA++      + A  D A  + PL  L +  +LD+ GK+     D K VKASVYA+YDES+T+RYIGVSR + QSLRL LAR P+ TY F+V +I++P+R LLEI +++W+++ G  P GN +  +Q +WE A++V PL  E D A +   + K + E+  +KK+  RFE   + +L  RGV ES+RFDPKLKGKGLLD+ + K PDS+VP
Sbjct:   38 RQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISA----SVANADVADSIPPLDSLPYVPYLDETGKINDCGADAK-VKASVYALYDESETVRYIGVSRSVAQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVP 279

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: A0A0G4GGJ4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GGJ4_VITBC)

HSP 1 Score: 196 bits (497), Expect = 1.440e-55
Identity = 111/236 (47.03%), Postives = 154/236 (65.25%), Query Frame = 1

Query:  205 EYVKAELARVQEEYEANRKAKMKEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASID-TKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDVKMPKPDSSVPK*SNTPRSISEV 909
            EY K +L   +  Y    + ++K +T +  A GD ++  L+ L    +L  DGKV S D T GVKASVYA+YDE KTL+++GV+R I+QSL L LAR P+ T+Y KV +I RP+RSLLE+IK+SW++E+G+ P GN     Q +WEH +++ PL T+EDR   AE ++KGK      ++A R+E E  E+LE R V E +RFDPKLK +GL D+ +PKP   VP  +  PR   EV
Sbjct:    7 EYTKQQLKEKESRYHHELQQRLKAETDRLRASGDVSIPSLSSLPLMPYLTPDGKVTSADVTPGVKASVYAIYDEGKTLQHVGVTRSIRQSLLLHLARMPQLTHYVKVHHILRPNRSLLELIKQSWLDESGNIPPGNRP-PDQELWEHPLDIKPLMTDEDRERYAEKEQKGKGFNVYLEVARRYEAEKKEVLEARHVTEEVRFDPKLKRQGLSDLLIPKPKDEVP--TGAPRQNKEV 239

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: K8YTT3_NANGC (Protein atypical group n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTT3_NANGC)

HSP 1 Score: 198 bits (504), Expect = 6.790e-54
Identity = 117/247 (47.37%), Postives = 168/247 (68.02%), Query Frame = 1

Query:  151 RRSAGLCMATNSELDQSAEYVKAELARVQEEYEANRKAKMKEQTRQAAARGDAA--VTPLADLEFHSFLDKDGKV--ASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGK-EDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDVKMPK-PDSSVP 873
            R++A L   T++ LD  A++VKAELAR ++EY+A+ KA++      + A  D A  + PL  L +  +LD+ GK+     D K VKASVYA+YDES+T+RYIGVSR + QSLRL LAR P+ TY F+V +I++P+R LLEI +++W+++ G  P GN +  +Q +WE A++V PL  E D A +   + K + E+  +KK+  RFE   + +L  RGV ES+RFDPKLKGKGLLD+ + K PDS+VP
Sbjct:   38 RQTAALEAGTSASLDDQADFVKAELARKKQEYDASLKARISA----SVANADVADSIPPLDSLPYVPYLDETGKINDCGADAK-VKASVYALYDESETVRYIGVSRSVTQSLRLHLARMPEQTYGFRVYHISKPTRVLLEITRDTWVDQLGYQPQGNDNGPNQQLWESALDVKPLMNEADHAALETARIKQRSEENAMKKVTRRFEEAKISVLNARGVTESLRFDPKLKGKGLLDLYLEKQPDSAVP 279

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: A0A7S2WPP4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPP4_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.670e-48
Identity = 96/214 (44.86%), Postives = 144/214 (67.29%), Query Frame = 1

Query:  205 EYVKAELARVQEEYEANRKAKMKEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASIDT-KGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDV 843
            ++VKA LAR + EY   R+A++  +  Q  +   A++  L  ++   +L  +GK++S D   G +ASVYA+YD  + LR++G+SR I QSLRL L R+P+  Y++K  ++  PSR LLE ++E+WI ENG  PDGN  E + + WE   +V  L TEEDR  + E ++ G+ED  +KK+A RFE + +++L+ RGV E++RFDPKLKGKGLLD+
Sbjct:   67 DHVKAALARKEAEY---REAQLHARAHQRGSVELASLPSLDSIDSRPYLTDEGKISSADPPSGTRASVYAIYDTHEHLRFVGISRDISQSLRLHLGRQPELCYFYKAMHMQSPSRMLLESVRENWIAENGVCPDGNDGEGALSTWEKPTDVNGLMTEEDRNAIDEARQIGREDGAIKKVARRFETQKVDVLKARGVTENLRFDPKLKGKGLLDL 277

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: A0A388KW50_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KW50_CHABU)

HSP 1 Score: 167 bits (423), Expect = 3.930e-43
Identity = 86/205 (41.95%), Postives = 137/205 (66.83%), Query Frame = 1

Query:  265 KMKEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDVKMPK--PDSSVP 873
            ++++Q +++    D +V  L DLE+  ++ ++GK+      G KASV+AV+DE KTL+Y+G+SR + QS+RL  AR P   ++ KV +I  PSR++LE I+ +WI EN + P GN     Q +WE+A++  PL T+E++ ++ + +E  K  R LK +A R E++++E  + R V E++RFDPKLK KGLLD+K  +  PD+SVP
Sbjct:  174 RLQQQHQRSGTGADKSVVRLRDLEYQPYVTEEGKIVDCTKAGAKASVFAVFDEDKTLQYVGMSRQVYQSMRLHFARMPSKCHFVKVVHIASPSRAVLESIQTAWITENDTRPPGNDGGEIQHLWENALDCKPLMTDEEKELIEKTEEGPKRARTLKNVARRIESQLVEQFKLRNVSETLRFDPKLKEKGLLDLKSTQYVPDTSVP 378

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: A0A1Y1IDT5_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDT5_KLENI)

HSP 1 Score: 162 bits (411), Expect = 3.540e-42
Identity = 100/230 (43.48%), Postives = 135/230 (58.70%), Query Frame = 1

Query:  193 DQSAEYVKAELARVQEEYEANRKAKMKEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDVK--MPKPDSSVPK 876
            DQ AE  +A  A  + EYE  + A  +      A RG A VTPLA+L    FL ++GK+A       KASVYA++DE K +R++G+SR I  SLRL  AR P   +  KVQ+I  P RS LE I+++WI E G  P GN +   Q  WE+ ++V PL T++++A V E        + LK++A R E E+      R   ES+RFDPKLK KG+LDVK   P PD+ VP+
Sbjct:   84 DQHAEATRAATAAAKAEYERRQAAARR------AGRGAAPVTPLAELPLVPFLTEEGKIADCSQADAKASVYAIFDEEKVVRHVGISRAIGPSLRLHFARVPLQCWAVKVQHIKAPRRSALEAIRDAWIAELGYRPTGNDNGPEQNRWENPLDVRPLMTDDEKAAVEEAAPGPPTAKALKQVARRVEAELKASYAARQSTESLRFDPKLKEKGMLDVKNPAPPPDTKVPE 307

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: A0A2K1K7G9_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K7G9_PHYPA)

HSP 1 Score: 158 bits (400), Expect = 2.800e-41
Identity = 91/229 (39.74%), Postives = 143/229 (62.45%), Query Frame = 1

Query:  193 DQSAEYVKAELARVQEEYEANRKAKMKEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDVK--MPKPDSSVP 873
            D+  E  +   A+ QEEY      K ++  R+ + +G   V+ L+ LE+  +L ++G +A     G KAS+YA++DE+KTL +IG+SR + QS+RL  ARRP   YY KV ++++PSR+LLE  +++WI ENGS P GN +   Q +WE+A++  P  T+E++ +  E      + + LK +A R E ++  I ++R   + +RFDPKLK + LLD+K    KPD+SVP
Sbjct:   27 DEHQERTRQATAQAQEEYR-----KRQDALRRQSMQGGEGVS-LSSLEYIPYLTEEGHIADCTEPGAKASLYAIFDENKTLCFIGISRQVYQSMRLHFARRPLQCYYVKVMHVSKPSRALLEGTRDAWISENGSVPVGNDNGEIQNLWENALDCTPFMTDEEKLLHEEAAPGPPKAKVLKNVARRIEKDLEGIFKQRNCTDVLRFDPKLKDRCLLDLKGVAVKPDTSVP 249

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BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Match: UPI000D1C5673 (uncharacterized protein LOC112345017 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C5673)

HSP 1 Score: 158 bits (400), Expect = 4.110e-41
Identity = 89/229 (38.86%), Postives = 141/229 (61.57%), Query Frame = 1

Query:  193 DQSAEYVKAELARVQEEYEANRKAKMKEQTRQAAARGDAAVTPLADLEFHSFLDKDGKVASIDTKGVKASVYAVYDESKTLRYIGVSRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTPDGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGKEDRGLKKIAGRFENEILEILEERGVKESIRFDPKLKGKGLLDVKMP--KPDSSVP 873
            +++ E +K E  + QEEY   ++ +++ Q R+ A+  +  +  L DLEF  +L +DG +        KASVYAV+DE+K + YIG+SR I  S+RL  AR P+  Y+ KV ++T+PSRS+LE+ +  W+ E+   P GN D   Q +WE+ ++  PL T+E+  +  E  +   + + LK +A R E  ++   + R  KE++RFDPKLK +GLLD+K    KPD+S+P
Sbjct:   42 EENIERIKRETLQAQEEY---KRRQLQTQGRELASSKE--LVSLEDLEFLPYLTEDGMILDCSQADAKASVYAVFDENKVINYIGISRQIHPSMRLHFARVPQKCYFVKVYHVTKPSRSILELTRNKWMAESPVPPPGNTDSEQQNIWENPLDCKPLMTDEEIKLHEEAGQGPPKAKVLKNVARRIEKSLVASFDSRNCKETLRFDPKLKEQGLLDLKNEPKKPDTSIP 265

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1557.4139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G234_ECTSI	2.660e-182	95.21	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CJ14_9STRA	1.730e-63	52.10	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A4D9CSA1_9STRA	5.520e-56	47.37	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
A0A0G4GGJ4_VITBC	1.440e-55	47.03	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
K8YTT3_NANGC	6.790e-54	47.37	Protein atypical group n=1 Tax=Nannochloropsis gad...	[more]
A0A7S2WPP4_9STRA	1.670e-48	44.86	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A388KW50_CHABU	3.930e-43	41.95	Uncharacterized protein n=1 Tax=Chara braunii TaxI...	[more]
A0A1Y1IDT5_KLENI	3.540e-42	43.48	Uncharacterized protein n=1 Tax=Klebsormidium nite...	[more]
A0A2K1K7G9_PHYPA	2.800e-41	39.74	Uncharacterized protein n=2 Tax=Physcomitrium pate...	[more]
UPI000D1C5673	4.110e-41	38.86	uncharacterized protein LOC112345017 n=1 Tax=Selag...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1557	contig	Ecto-sp13_S_contig1557:9591..15695 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	524.6
Seed ortholog evalue	2.9e-146
Seed eggNOG ortholog	2880.D7G234
Model size	1584
Hectar predicted targeting category	chloroplast
Exons	7
EggNOG OGs	28NP8@1,2S5YX@2759
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-11_003660.1
Cds size	879
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1557.4139.1	prot_Ecto-sp13_S_contig1557.4139.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1557 10296..15695 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462825.2232604-UTR-Ecto-sp13_S_contig1557:9590..10295	1681462825.2232604-UTR-Ecto-sp13_S_contig1557:9590..10295	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig1557 9591..10295 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462825.2354558-CDS-Ecto-sp13_S_contig1557:10295..10406	1681462825.2354558-CDS-Ecto-sp13_S_contig1557:10295..10406	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1557 10296..10406 -
1681462825.2476103-CDS-Ecto-sp13_S_contig1557:11095..11236	1681462825.2476103-CDS-Ecto-sp13_S_contig1557:11095..11236	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1557 11096..11236 -
1681462825.269025-CDS-Ecto-sp13_S_contig1557:11669..11777	1681462825.269025-CDS-Ecto-sp13_S_contig1557:11669..11777	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1557 11670..11777 -
1681462825.280457-CDS-Ecto-sp13_S_contig1557:12230..12326	1681462825.280457-CDS-Ecto-sp13_S_contig1557:12230..12326	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1557 12231..12326 -
1681462825.2906144-CDS-Ecto-sp13_S_contig1557:13093..13249	1681462825.2906144-CDS-Ecto-sp13_S_contig1557:13093..13249	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1557 13094..13249 -
1681462825.2998283-CDS-Ecto-sp13_S_contig1557:13677..13738	1681462825.2998283-CDS-Ecto-sp13_S_contig1557:13677..13738	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1557 13678..13738 -
1681462825.3090298-CDS-Ecto-sp13_S_contig1557:15489..15695	1681462825.3090298-CDS-Ecto-sp13_S_contig1557:15489..15695	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1557 15490..15695 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1557:9591..15695-
coding sequence from alignment at Ecto-sp13_S_contig1557:9591..15695-

protein sequence of mRNA_Ecto-sp13_S_contig1557.4139.1

>prot_Ecto-sp13_S_contig1557.4139.1 ID=prot_Ecto-sp13_S_contig1557.4139.1|Name=mRNA_Ecto-sp13_S_contig1557.4139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MKSTMVLTLLAFGNTQAFFVSAPMSRRTGATAATGKSSVSRAEDWAGFAR
RRSAGLCMATNSELDQSAEYVKAELARVQEEYEANRKAKMKEQTRQAAAR
GDAAVTPLADLEFHSFLDKDGKVASIDTKGVKASVYAVYDESKTLRYIGV
SRGIQQSLRLSLARRPKDTYYFKVQNITRPSRSLLEIIKESWIEENGSTP
DGNADEASQAVWEHAVNVVPLFTEEDRAVVAEWKEKGKEDRGLKKIAGRF
ENEILEILEERGVKESIRFDPKLKGKGLLDVKMPKPDSSVPK*

mRNA from alignment at Ecto-sp13_S_contig1557:9591..15695-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1557.4139.1 ID=mRNA_Ecto-sp13_S_contig1557.4139.1|Name=mRNA_Ecto-sp13_S_contig1557.4139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1557:9591..15695- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCACCATGGTGTTGACGCTGTTGGCGTTCGGGAACACGCAGGC
ATTTTTCGTGTCTGCGCCGATGAGTAGGAGGACCGGTGCTACGGCTGCGA
CGGGCAAGTCGAGCGTGTCCCGAGCTGAAGACTGGGCTGGGTTCGCACGG
CGACGCTCCGCTGGCTTGTGTATGGCCACGAATTCGGAGCTGGACCAGAG
TGCAGAGTGAGCATGGCGCATGGTGTTCGTGGTGGTGTCCCGTTTCCCTC
GCATGCCATGTTGTGTGTTTGCCAGCTCTACTGCCAACCGCAGTCGACGG
TTCGCGTGCATACAACAGTGCGAGATCATGTACATACCTACGACGTATCA
TACGCTCTTCGTAGGCGCTCTAGGGCGAAGCAGGATGCTTGGCGAGAGGC
TGTGTGTGACCAATTCCTTTCCTCAAGGGAGCATGATTTGGAGCCGGGTC
GTTCCTCGTATGTCTCGCACTCGCACATCTAGCGTTTGAACTGCAACTTC
ACCTCCGAACAATCCAGAGCATCTCTGTGCCGGGATTGCAGCAAGTACCG
ATCCGCAGGCGCACTGCTGTCGGGGTCAATCGACACAGAAAACAAGAAGT
TGCAATTGGAAATTTGGGCTGCAATCCATGAGGTATTCCATACAACTAAA
CAACGACAACGCGCGAAAGGGGTAGGTAGACCTCCGGGTATTGATGCTGA
GGTACTGCTGTACTGCAGTAGATCCTGATACTTGTCGAGGAACGAAGAGT
CGCAGGGAGGAACATCGTCATGACCAAGCTGCGGCAGATAGACAGCAGTT
GGGCATTTTGTAGAGCGAAGAGCAGTCTAGCAGAGTGCAACCAACTGCGG
GGTAATGGTCTCAGCACAACACTAGACACAGCAGGAGGAACACGAAGCAG
TAGATTTTCTTTCGTTTTCTCCTATTTCAAGACTGCTGTGGGTATATCTC
GAACGGGTAGTCCGTGTGTGTGTAATTATTTTTCCTGATATTTCAAGTCC
TCTTTGTAAGGGGGCGGAGACCGGATGCTGTCGTTCCACGCCGCGGGCCA
GAAAGCGTGTTTCGCGCGTTTGTTATGATCCCTCGACTAGACTGATGCCA
TTTGATTGATCAGTCGGTAGGCACTGTCGGCGCTTGCCGAAGAAACGCAC
AAATATACATACACTCAGTCTGCTGCTTGCTTTCGTGGCTTTCCACGGGC
ACCGAGTTTGCCGTAATCGGTTGATCCTCATTGAAGTCTGTAGCGTAGTG
TCGAAATACCGCTGTTCCTTGACAAGAAAAATGAATCGGATTGAAGCAAG
CTGTAGCTGTGTGATCACCGTCTTGTCCGGCGCATGCTCCACTAGCAAGC
AGGAGCAACGTTTCCACGCTGTCCACGAAACGCCATGGATACGTGCAGAG
AGCAACCTCAGTGGGGAAGGCGGCTCTTGATACTGTCTACAACAGCGTAG
ACCCAGCGGGAGGTACTTGACGCCGTTCGGTCGGGTGCATTGTGCATAAA
CAGTTTCAATTTGATGGTTTTCCACCAGCTTACGCCTTGTGATGAAGTTT
CGCGAGGAAACCAGCTTTCTTTAGCAAACATTTATCTAGTCCAGCGCGTG
CCTTTGTTGGCTACGCATGTTTTCTCTCTACATGGAGGTGATACTCCGGT
CTTGGCTGGTGAATACGTAGGACTAGGCCGCGACCACGCTGGCACTACGT
TGCCCACGTCTACAGCGGTGCTTTGAAATTGACTGTCTGTTGCCACCGTC
GATCTTACAGACGCTTCGCGACACGCATCCACGAAGGTCATCTAGAAACA
GCGGTTCACGTTCATGGGAGAGAGTTGTGAAGCAATGTATGCATTAATCG
CTCTACTTTTAGGACACCTTTCATGTGCTGCAATGACCAAGTTTTCAAAC
TGGCCCACTTTGTTTGACAGTCGCGGTTTTGTGCTTCCTCTTTTCAAATC
TGAACAGGTACGTGAAGGCGGAGCTAGCCAGGGTCCAAGAGGAGTACGAG
GCCAACCGAAAAGCTAAGGTGCGCACAAGTATCTCTATGCGGCGAGACCA
GGTCGGAAAACGTGCCGCGGTTTGCGGCCTTGGCCAGCCCTCAGCAACAG
CTCTCGTTGGGACTGGTGGGACCTGCGCACGGTCTCAATCTGTTCTTGGC
GACTGAACTATGAATAAGAGGCGTGAGAACCCGACCTAAAGGTTATGATG
CGAGCGGCGAGATCTGGCCGGTGTGACCGATGGGTGATCTCTTGCGTGCT
ACGCAAAAAACAATGATTCCCGAGTCCTTACCCGCGTGTTCTCTGATTGG
TATTGTTGAGTCGTGGGGCAAGGGACACAGGACAATGGGTGGTGTCTACA
CGGTAGTGGATGTCAAAGTTGATGCTTGTGTGCCTCATGGCCATGGGGTG
ATTTTTGGCGTGTTGTTGTTGCTAATTCTTTCTCCCCGGGCGACAGATGA
AAGAGCAGACGCGACAGGCGGCGGCGAGAGGGGATGCCGCCGTGACCCCC
CTGGCTGACCTAGAGTTCCATTCCTTCCTGGACAAGGACGGGAAGGTGGC
CTCGATCGACACAAAGGGCGTCAAGGCTAGCGTCTACGCAGTCTACGACG
AGGTGAGGAACACGGCCTGCGCACAGGTGGTGCAGACTGCGGCGCTACTG
TACGCGGAGCAAAAATCCTGTACCAGCCGATTTTGTCCACGGCCGGCGTT
CCGCAGCAGGGAAGCGGTCTCAATTTCGCGGTTATCGTCTTTGTGATGAT
AATTCGCCCTCTCTATTGTACGGAGATCATACTCATACGGAGGGAGTATC
TACACCGAGATCGATTAAGATAGAGACACCGGTGACACCAAAAATTGACG
AAAACATTATTCAGTGCAGGAAACCCTGACAACACACATGGCAAAAATCA
TATTTCAGTAATTGCCTCTTGGCGATCGTTATTTCACATGTCCAATGATA
ACCTTCCGGATATGGGCCACCAAGAGCAGTATCGTTACGATGGTCTTTTG
TTGTTGTGGATCGATCAAGGTTTAGATGTTAGCCCGTGCAGGGGGGGGGT
GTAGTGGTGTTTTACGGAGAACTCGGGGTCGAGGCGGACAAAATTAAGTA
CCCACCGTGCACTAATGGTGTCTTGACGGCGGTTGCATGGGTTGTTGGGT
TGGGCCACTCTGCTCTGTGTGACTTCAGCTTGATGAAACGAGGGGGTCCG
TGAGGGTTAAAAGACGATTGATGCATGCGACACGCATTGACACCGCTGCG
AACAACGCGACTCCGCATTACAGTAGTATATTCTAGATTGCCCTTGACTG
AGCGCTGTTTGACACGGCTCGTGCCCTTGTCGTTTCTCGACCGCGTCGCC
GCCGCAACCTATCCCGCAGTCCAAGACACTGCGGTACATCGGAGTGTCGC
GCGGGATTCAGCAGAGCCTCCGCTTGAGTCTGGCCCGCCGTCCAAAGGAC
ACGTACTACTTCAAGGTGTGCGTGCGCGTCCTTTCTCGACGGTTTTCAAC
GTCAAAATATTCATCCGCGAGAAATCTGCTGCTTTTTTTCCTCTTGGGAG
GCTGTTTCGTCATTTGATGAAGGCCATTGGTCTCTGCTGGATCCATGCAC
CAAAGCGTAGTGCGACTCGTGTTGCTTGCAGATGGAGATTGTTGTTTGTC
GACGGTCAACATGTGTCTTTCTCAACTTTTACTCGCGGAGGGAGTGGACG
TGCTCACGCGCGCCGCCCGTATTACGATGCCCGCAGTGGGGTTCGTGCTG
GTGTATCCTTGTTTATCGGTGGCTGGCTGGCGGGGTCAGTGGCCAGAGTT
GTACCCAGCAATACATCTGAATATCCATAGGTGATGTTTGGGTTATTGTG
TGAGTTGGAGGTGTTTGGTGGCAATGTTTTGACACCGCGTTGTTTCGTGT
CCCATGTGGTTGGTGCAGGTGCAAAACATCACGCGACCCAGCCGATCTCT
GCTGGAAATCATCAAAGAGTCTTGGATAGAGGAGAACGGCTCTACGCCCG
ACGGCAATGCTGACGAAGCCAGTCAGGTGCGGTGGTGCTGCAACCTTTGG
GTGTCATGGTGGTCAACTAATCCCATGCGAAAGCGACAAGACTGCTGTAG
CAGGTTCTTGAGACCGCGGTTGAAGGAGCGTCCTCACAAGTGCATTGTTC
TTCTGTTTACGATGTGCCAGCCTCAGTGGGGATGCTCGTCGGGCTATCCG
TCAGGCCGGGGGCCAACGTTCAAGGACAAGCAGCCTGTGTGCGCCACTGT
CGTCAAATTTTGACTGGAAATTTAGCGAACAACAACACCACATGTTTGAT
CGTGGGCCAAGCCGAGACCGTCCATTCTTTTTCTCCGAGCAAGTGCACAC
AACGTGTTGGTCATGTTCCCTTTCCCAGCGAATAGAATGATGGCATCGTT
TCTCTGCTAAAACTTTCTCTAAACAACCCGGCCTTGCTCCTTTTGTCGTG
CCCTTGAAGGCGGTGTGGGAACACGCCGTCAATGTGGTCCCGTTGTTCAC
CGAGGAGGACCGAGCCGTCGTAGCAGAGTGGAAGGAAAAGGGGAAGGAAG
ACAGGGGGCTCAAGAAAATCGCAGGCCGGTTCGAGAACGAAATCTTGGAG
GTTCGTGCGTCATGTTGCGGGCCGTTCTCCGGAACGTTTTTTCTTCTCGC
AAAGCTCCTTTTTCTGATCATTTTCTTTCCGGCACCGCTGTCCAGATCAT
TGTGCATCTTCTCATTGTCTTCGACGAGTATCTTGAGGCCATCATGCAGA
TCCTTACCGGCGGCCAGCTCTTTTTGTTCCCCCGTGCGTGTTTGATGTGC
CGGTTTCGCAGGAAGGACACGCCCGTTGCTTGTAGTTGCTACACCAGTGC
TGTTGTTCCAGTACACGTTTGGAGCGCCGCACTTTCGACTCAAGTTTGCC
AACGATGCGTATGAGAGGATGTTTTAGACCTGCTATTACCGTAAGGTTAC
GAGTCAGCGCACAGGGGTGCGATCGATGATCAAAGCGCTTATTTCTCCAT
GACCAGGAGGGTGCGAGCGCCATCTGACACTTGTCCGGAAAGCTCTCGAT
GAGATATTTCCAAGACCACCTATTTCGACAGTGGCAACCCCCTGGTTGTG
GAGAAACGACGCTTTGAAAATCGATCGCACCCTGTGCGCTGACTCGCAAC
CTTTCGGTACACACTAGTCTCGTTCGACACGGGGGAAAGAAGACGAGAGG
AAAAGAGATCAATCATGATGTGGGTCCTTCACACGATTGCTGATTCCTCT
CCCCGTCTATCTCTATGCCGTGGACGCTGCCTGTGGCAGATCTTGGAGGA
GCGGGGGGTGAAGGAGAGCATCCGGTTCGACCCCAAGCTCAAGGGAAAGG
GGCTGCTGGATGTCAAGATGCCCAAGCCGGATAGCAGTGTGCCCAAGTAA
TCAAATACTCCAAGAAGCATTTCGGAAGTATGTCGCTGCTGTTTTGGTTG
TGAACCGACAGTTTTGATACTGTTGGAACAGTGGTGTCGACCTTCCTTTT
TGTGGGGCGTCTCAACGGTAGCTCTATTTTGCTGGCGGTGAACTCGAGCT
CGGCAAACGGCGTAGAGATCATTTGGAACAACGTTGGATAGTGTTGTTTT
ACCCGGTATTGTGGGATTGTAGTGTACAAGTTTTGTTTCCGTCCTGCACG
TTGCCTTTGAACTCCTTCTTTAGAACGTTAATGACCGTGGTTAGATTGCT
CAAACCATAAAAACAGCCGTGCAGCCGATGGCTGTTTCTCCCAAGATAAG
ATACAATCGTCTAAATAGGGATGAACCCAGCAATGAAGGGTGAATCAAAT
GCACGCGAACCCTGCTCCGGCCATGCACCGCCGCCCGGTACAGCCCATGA
CACACGTGACTCACTGCTGATAGAGGACTCCCGTAAAGCGTGCCGCAGCC
TTCGAATCTCAGGAAAAGAGTTGCTGGTAAAGCGAGAGACATGGAGTAAG
CCCTAGCGTAGAGAGTGAAACAGCCCCGGCGGCGTCATGGGAATTTCGGA
ATGCCACCGACAAGCTCTTGCAATATGCACCGTGATCCACGGCTTTGGAG
AAGCCCGACGGCTGCAATAGTCATACACACATTCGCAGGGAAATGCTGCT
CAAGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1557:9591..15695-

>mRNA_Ecto-sp13_S_contig1557.4139.1 ID=mRNA_Ecto-sp13_S_contig1557.4139.1|Name=mRNA_Ecto-sp13_S_contig1557.4139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1557:9591..15695- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCACCATGGTGTTGACGCTGTTGGCGTTCGGGAACACGCAGGC
ATTTTTCGTGTCTGCGCCGATGAGTAGGAGGACCGGTGCTACGGCTGCGA
CGGGCAAGTCGAGCGTGTCCCGAGCTGAAGACTGGGCTGGGTTCGCACGG
CGACGCTCCGCTGGCTTGTGTATGGCCACGAATTCGGAGCTGGACCAGAG
TGCAGAGTACGTGAAGGCGGAGCTAGCCAGGGTCCAAGAGGAGTACGAGG
CCAACCGAAAAGCTAAGATGAAAGAGCAGACGCGACAGGCGGCGGCGAGA
GGGGATGCCGCCGTGACCCCCCTGGCTGACCTAGAGTTCCATTCCTTCCT
GGACAAGGACGGGAAGGTGGCCTCGATCGACACAAAGGGCGTCAAGGCTA
GCGTCTACGCAGTCTACGACGAGTCCAAGACACTGCGGTACATCGGAGTG
TCGCGCGGGATTCAGCAGAGCCTCCGCTTGAGTCTGGCCCGCCGTCCAAA
GGACACGTACTACTTCAAGGTGCAAAACATCACGCGACCCAGCCGATCTC
TGCTGGAAATCATCAAAGAGTCTTGGATAGAGGAGAACGGCTCTACGCCC
GACGGCAATGCTGACGAAGCCAGTCAGGCGGTGTGGGAACACGCCGTCAA
TGTGGTCCCGTTGTTCACCGAGGAGGACCGAGCCGTCGTAGCAGAGTGGA
AGGAAAAGGGGAAGGAAGACAGGGGGCTCAAGAAAATCGCAGGCCGGTTC
GAGAACGAAATCTTGGAGATCTTGGAGGAGCGGGGGGTGAAGGAGAGCAT
CCGGTTCGACCCCAAGCTCAAGGGAAAGGGGCTGCTGGATGTCAAGATGC
CCAAGCCGGATAGCAGTGTGCCCAAGTAA