mRNA_Ecto-sp13_S_contig1557.4138.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1557.4138.1
Unique NamemRNA_Ecto-sp13_S_contig1557.4138.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1557.4138.1 vs. uniprot
Match: D7G235_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G235_ECTSI)

HSP 1 Score: 511 bits (1317), Expect = 6.950e-180
Identity = 279/315 (88.57%), Postives = 282/315 (89.52%), Query Frame = 1 
Query:  295 MTSVPWDDEEETAASNVRWQGRTLINFVAGRSRLRTLPVVIHILPKDIGWFSADASLFNELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYNGDDITSANK-------RKEKRFVGSNXXXXXXXXXXXXXXXPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSTPATADQEALDVEAIGRRSGAGTGVTVGVQGGPRDTGLLTWLWGGGGEGGSTAAGGVKGGVRQHFIGSASWQGSSPSEQRREENDDDIQRAIALSLAVEPRAEGGGVEESKG 1218
            M SV WDDEEETAASNVRWQGRTLINFVAGRSRLRTLPVVIHILPKDIGWFSADASLF+ELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSY GDDI  AN+        K KR VGSN XXXXXXX       PAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSTPA ADQEALDVEAIGRRSGAGTG TV VQGGPRDTGLLTWLWG GGEGG +AAGGVKGGVRQHFIGSASWQG SPSEQRRE    DIQRAIALSLAVEPRAEGGGVEESKG
Sbjct:    1 MASVSWDDEEETAASNVRWQGRTLINFVAGRSRLRTLPVVIHILPKDIGWFSADASLFDELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYTGDDIERANRGSSSAGSSKGKRCVGSNSXXXXXXX-------PAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSTPAAADQEALDVEAIGRRSGAGTGATVDVQGGPRDTGLLTWLWGVGGEGGGSAAGGVKGGVRQHFIGSASWQGKSPSEQRREXXXXDIQRAIALSLAVEPRAEGGGVEESKG 308
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BLAST of mRNA_Ecto-sp13_S_contig1557.4138.1 vs. uniprot
Match: A0A836CBI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.910e-26
Identity = 64/198 (32.32%), Postives = 110/198 (55.56%), Query Frame = 1 
Query:  313 DDEEETAASNVRWQGRTLINFVAGRSRLRTL-PVVIHILPKDIGWFSADAS-LFNELKLLLRERVIS------ATGNGDKDAEAPK-----SRKRARKEEVCIQGERLQFTYRYRKTLPRYTVLSYNGDDITSANKRKEKRFVGSNXXXXXXXXXXXXXXXPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQF 867
            +D +   + +  WQ R  IN + G +R + + P+V+H+LP+D+ W++A +  L+ EL+ LL+++VI+      +   GD++ E        SR++AR+ E C+QGE LQFT+R+R T P Y+++++N     +  ++   +                    PA+  LPL+E+TLL WV+ FD  +PY P+P E    F
Sbjct:    7 NDAQAAVSVSRAWQPRNCINLLIGDARRKQIMPLVVHLLPQDLAWWNASSDKLWEELQRLLKDQVITPYLATPSAVTGDEEEEKSTDAISTSRRKARRGEKCVQGEGLQFTFRFRPTKPVYSIITFNSVPAATQQQQTASKQAA-----------------PAYASLPLNEATLLAWVFKFDPANPYAPLPTETVEVF 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1557.4138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G235_ECTSI6.950e-18088.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBI6_9STRA3.910e-2632.32Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1557contigEcto-sp13_S_contig1557:7612..9576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1221
Hectar predicted targeting categoryother localisation
Exons3
Cds size927
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.173403-UTR-Ecto-sp13_S_contig1557:7611..79051681462825.173403-UTR-Ecto-sp13_S_contig1557:7611..7905Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1557 7612..7905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.1822917-CDS-Ecto-sp13_S_contig1557:7905..80641681462825.1822917-CDS-Ecto-sp13_S_contig1557:7905..8064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1557 7906..8064 +
1681462825.190284-CDS-Ecto-sp13_S_contig1557:8501..86801681462825.190284-CDS-Ecto-sp13_S_contig1557:8501..8680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1557 8502..8680 +
1681462825.1984146-CDS-Ecto-sp13_S_contig1557:8987..95761681462825.1984146-CDS-Ecto-sp13_S_contig1557:8987..9576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1557 8988..9576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1557.4138.1prot_Ecto-sp13_S_contig1557.4138.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1557 7906..9576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1557.4138.1

>prot_Ecto-sp13_S_contig1557.4138.1 ID=prot_Ecto-sp13_S_contig1557.4138.1|Name=mRNA_Ecto-sp13_S_contig1557.4138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
MTSVPWDDEEETAASNVRWQGRTLINFVAGRSRLRTLPVVIHILPKDIGW
FSADASLFNELKLLLRERVISATGNGDKDAEAPKSRKRARKEEVCIQGER
LQFTYRYRKTLPRYTVLSYNGDDITSANKRKEKRFVGSNSSGGGSGGGGG
GGGGPAFRHLPLSESTLLVWVYPFDKDDPYRPVPNEAALQFASSTSTPAT
ADQEALDVEAIGRRSGAGTGVTVGVQGGPRDTGLLTWLWGGGGEGGSTAA
GGVKGGVRQHFIGSASWQGSSPSEQRREENDDDIQRAIALSLAVEPRAEG
GGVEESKG*
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mRNA from alignment at Ecto-sp13_S_contig1557:7612..9576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1557.4138.1 ID=mRNA_Ecto-sp13_S_contig1557.4138.1|Name=mRNA_Ecto-sp13_S_contig1557.4138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1965bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1557:7612..9576+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCACCACAGTACAAAGGCGAAAGAGAAGCAAGAGAGCAGAGAGACAGA
GAGCGAACGAAGAGCTGGTCAAGTGGCCGAGTCTCAACGTGCGTAGAGTT
CCCCTTTTTCTAGCCTAGACTTGGACTCCAACCCCGCCCTGTGAACGAGG
AAGAAACCTACAGCTATCGTAGCTGTATTGGGTTTGTGCTCTCCTCGCGA
GCGAACACGCTTCCATCGCTGGAGGAACGACAATTGGCAAATCTTATGCC
AACGCTGCTGTCTGCGTGAGAGAGCCGCACCGAGGCTTCCCATCATGACG
TCCGTGCCGTGGGACGACGAGGAGGAAACGGCGGCGAGCAACGTTCGATG
GCAAGGGAGAACACTCATTAACTTTGTGGCTGGAAGATCCAGACTGCGGA
CGCTTCCGGTTGTGATCCATATTCTGCCAAAGGACATCGGGTGGTTTTCG
GCGGTGAGGCTGTTGTTCACTGGTGCTTGACAGCAATAGCCTCTGTTCGA
TTTTTCAGGTTCATGTGTTGAGCTCTATGGCACAAGATGTCGGAAATCAT
GTCGCCCGTATGACACTCACTGCGTGGACTGTGTACCCCTCGCCGCCGCC
GCGCGACGTTCTGGCACTACAGAGTAATGGCTCACAGTAAATCACCCGTC
AAAAGTGACCCGCTTCACCTCTGTTGGCCCTATCTATTAGCTGGGAATAA
ACAGTATCGAGACATTTCAGCTATGTAGATTGCGGCACGCAACACCGACT
GTCCGTCGTCTGTCGAGTATGAAACATTGACATTCCACCGCAAACTTGTA
CGGTAGGCATAAACAAGCACCCCTTTGAAAACAACGATTGTATGGAACCT
CTCTCCCGGTTTCTGTGCCGTGCCTGGTTCGGATCTCCAGGATGCATCCC
TTTTCAATGAACTCAAGCTGCTGCTCCGAGAGCGGGTCATCTCCGCCACT
GGCAACGGCGACAAGGATGCCGAAGCACCCAAGTCCCGAAAGCGCGCCCG
AAAGGAGGAAGTATGCATACAGGGCGAACGGCTTCAGTTCACGTACCGCT
ACAGAAAGACCTTGCCCAGGTGAGCAAGCGACTGGCAAACCATGCCGTGC
GTATTGCTCCGGACGTGTGTGCGAGCTTACCTTACAAGGTTTGCATAAGA
TTCGGGCTGATTTGACCGGCTTGGCGGGCTTGACTTGTTCCGCCGCACCG
CCAGTAGTACCCCTCCGTTGTTGAAGCAAGCACTAGGTAGGCCAGGAGAA
CTGTTTTTCAGCGCCTGTACAGCTTGTGCTTGTGGAAGGTCAGCTTTTCC
ACGTTTGGTTGCTGGCATATGTTTGTGGAGCATGGCACACAAACACATTG
CAACACGCATCGTGCGTGCGTTTCAGGTACACTGTTCTGTCTTATAACGG
AGACGACATCACGAGCGCCAATAAACGCAAAGAAAAACGTTTTGTTGGAA
GCAATAGCAGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGTGGCGGCGGC
CCAGCTTTCCGCCACCTCCCTCTCTCGGAGAGCACGCTACTGGTGTGGGT
ATACCCGTTCGACAAAGATGACCCATACCGCCCGGTTCCCAACGAGGCCG
CCCTGCAGTTCGCATCCTCGACATCAACGCCGGCGACAGCCGACCAAGAA
GCGCTTGACGTCGAAGCCATCGGGAGGCGTTCGGGAGCGGGGACAGGGGT
TACGGTTGGTGTGCAGGGGGGTCCGCGAGATACCGGTCTGTTGACGTGGT
TGTGGGGAGGTGGGGGGGAGGGAGGAAGCACCGCAGCAGGAGGTGTGAAG
GGGGGCGTGAGGCAGCACTTCATCGGCAGCGCCTCGTGGCAAGGATCATC
ACCCTCGGAGCAACGACGAGAAGAAAATGACGACGACATCCAGCGAGCCA
TTGCCTTGTCTCTCGCGGTTGAGCCGAGAGCGGAGGGCGGCGGAGTAGAA
GAGAGCAAAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1557:7612..9576+

>mRNA_Ecto-sp13_S_contig1557.4138.1 ID=mRNA_Ecto-sp13_S_contig1557.4138.1|Name=mRNA_Ecto-sp13_S_contig1557.4138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1557:7612..9576+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTCCGTGCCGTGGGACGACGAGGAGGAAACGGCGGCGAGCAACGT
TCGATGGCAAGGGAGAACACTCATTAACTTTGTGGCTGGAAGATCCAGAC
TGCGGACGCTTCCGGTTGTGATCCATATTCTGCCAAAGGACATCGGGTGG
TTTTCGGCGGATGCATCCCTTTTCAATGAACTCAAGCTGCTGCTCCGAGA
GCGGGTCATCTCCGCCACTGGCAACGGCGACAAGGATGCCGAAGCACCCA
AGTCCCGAAAGCGCGCCCGAAAGGAGGAAGTATGCATACAGGGCGAACGG
CTTCAGTTCACGTACCGCTACAGAAAGACCTTGCCCAGGTACACTGTTCT
GTCTTATAACGGAGACGACATCACGAGCGCCAATAAACGCAAAGAAAAAC
GTTTTGTTGGAAGCAATAGCAGCGGCGGCGGCAGCGGCGGCGGCGGCGGC
GGTGGCGGCGGCCCAGCTTTCCGCCACCTCCCTCTCTCGGAGAGCACGCT
ACTGGTGTGGGTATACCCGTTCGACAAAGATGACCCATACCGCCCGGTTC
CCAACGAGGCCGCCCTGCAGTTCGCATCCTCGACATCAACGCCGGCGACA
GCCGACCAAGAAGCGCTTGACGTCGAAGCCATCGGGAGGCGTTCGGGAGC
GGGGACAGGGGTTACGGTTGGTGTGCAGGGGGGTCCGCGAGATACCGGTC
TGTTGACGTGGTTGTGGGGAGGTGGGGGGGAGGGAGGAAGCACCGCAGCA
GGAGGTGTGAAGGGGGGCGTGAGGCAGCACTTCATCGGCAGCGCCTCGTG
GCAAGGATCATCACCCTCGGAGCAACGACGAGAAGAAAATGACGACGACA
TCCAGCGAGCCATTGCCTTGTCTCTCGCGGTTGAGCCGAGAGCGGAGGGC
GGCGGAGTAGAAGAGAGCAAAGGGTGA
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