mRNA_Ecto-sp13_S_contig15566.4135.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15566.4135.1
Unique NamemRNA_Ecto-sp13_S_contig15566.4135.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15566.4135.1 vs. uniprot
Match: D8LH28_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH28_ECTSI)

HSP 1 Score: 1176 bits (3043), Expect = 0.000e+0
Identity = 805/965 (83.42%), Postives = 828/965 (85.80%), Query Frame = 2 
Query:    2 QHLSLPRMARRLGRRPSHSSGSLVPGEPTEEADSFAGVGGSTQ-GGGGGVAGDLDVAAPPDVLGSRSGFGVQDTQGIGPGPTGAREDGGGGVVGEGIRGCAEWAVSFSGSLQQGIATVQTEHAVCVAPRNLGMDGPPEGLEAFFCPGLPASGEAPRACPPLSGGKSSLGVGKGGRGSCSSRGGCFGRGVPPPPPRLFTFAAPGRNGTGTFYGACLSVFRPVSQWVGGEPAADVAAHGINRGSSNSPPPCXXXXXXXXXXXTS-APDMQAPLVEEASKAGIDGIMGDASSRTETASHVDGGAATAASVGEERAPARLSGVGDVSDVLDGEVQTVDGGAQGNMGDNKAPSEEGAIEREDLGKLSADGGVSSTAERETAYGVVEDAVLDDATEAKEAAAVDAAATAQKKKEAANTTTLDKTPSMLEMLKLKKAMGIFGKSSSVGQNKVSPSPASTAPMSSLPPSVATTEVAPESDTEELRVEVDGQGADEAPGGLEGSGGTGAVAKTNXXXXXXXXXXMMDLSSRFRLGMGMFGSGKASPRVVTGSGFSPKLGTQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVGKFSSYARRAGNFLGSDSRGVGRSPRPTQPPPSPDVLPNGPPPPSPLVPVYLSSPPPEAEDAVLGHGEATAVXXXXXXXVDVGTDGASRQLSDSAASXXXXXXXXXXXXXDVPXXXXXXXXXXXXXD-ANELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GNGRQKHTFFVASGVCLLSTRPEIGAMRRALAAYWAAHGDGILARGSAIEGGAAAAHAGGEGPALAAPQSGXXXXXXDRGRSGSDGEVTEATTEVSGEAEDEQEQEEKKDVGAWTEMDPSTLRDVLVPFVTRERREEKDREGQAHRDDKERRRSAGASQDRTSAADVLTKSFSAGSLRHPGQSRGATNGQRDRAE 2878
            QHLSLPR ARRLGRRPSHSSGSLVPGEP +EADS AGVGGST  GGGGGVAGDLDVA+PPDVLGSRSGFGVQ+TQGI PGPTGAREDGG GVVGEGIRGCAEWAVSFSGSLQQGI TVQTEHAVCVAPRNLG+D PPEGLEAF+ P LPASGEAPRACPPL GGKSS GVGKGGRGS SSRG CFG GVPPPPPRLFTFAAPGR+G GTFYGACLSVFRPVSQW+GGEPAADVAA GINR S       XXXXXXXXXXX   A D Q PL EE SKA IDGIMG ASSRTETASHVD GAATAA+VGEERAP+RL+GVG VS VLDGEVQTVD  A+GNMGDN AP+EE AIE+EDLG+LSADGGVSSTAERET  GVVEDAVLDDATE +EA A+DA ATAQKKKEAANT TLDKTPSMLEMLKLKK MGIFGKSS VGQNKVSPSP STAPMSSLPPSVATTEVAPESDTEELRVEVDGQGADEAPGGLEGSGGT       XXXXXXXXXXMMDLSSRFRLGMGMFGSGKASPRVVTGSGFSPKLGTQAAXXXXXXXXXXXXXXXXX             GGVGKFSSYARRAGNFLGSDSRGVGRSPRP QPPPSPDVLPNGP      VPVYLSSPPPEAEDAVL H EATAV       +DV TDGASRQLSDSAAS             DVP     XXXXXXXX  ANEL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   GNGRQKHTFFVASGVCLLSTRPEIGAMRRALAAYWAAHGD ILARGSA EGGAAAAHAGGEGPALAA +  XXXXXX   R GSDGEV EA +E SGE E     EEKK VGAWTEMDPSTLRDVLVPFVT+ERR+EK +EGQAHR DKERRRSAGASQDRTSAADVLTKSFSAGSLRHPGQS GAT+GQ DRAE
Sbjct:  366 QHLSLPRTARRLGRRPSHSSGSLVPGEPPKEADSSAGVGGSTHAGGGGGVAGDLDVASPPDVLGSRSGFGVQETQGIEPGPTGAREDGGSGVVGEGIRGCAEWAVSFSGSLQQGITTVQTEHAVCVAPRNLGLDVPPEGLEAFYSPCLPASGEAPRACPPLGGGKSS-GVGKGGRGSGSSRGRCFGPGVPPPPPRLFTFAAPGRSGAGTFYGACLSVFRPVSQWIGGEPAADVAARGINRSSXXXXXXXXXXXXXXXXXXXXXALDTQRPLEEEESKARIDGIMGGASSRTETASHVDDGAATAAAVGEERAPSRLAGVGHVSGVLDGEVQTVDDRARGNMGDNMAPAEEVAIEKEDLGQLSADGGVSSTAERETDSGVVEDAVLDDATEGREATAIDATATAQKKKEAANTPTLDKTPSMLEMLKLKKGMGIFGKSSLVGQNKVSPSPTSTAPMSSLPPSVATTEVAPESDTEELRVEVDGQGADEAPGGLEGSGGTXXXXXXXXXXXXXXXXXMMDLSSRFRLGMGMFGSGKASPRVVTGSGFSPKLGTQAAXXXXXXXXXXXXXXXXXAPVEASPTPSSSSGGVGKFSSYARRAGNFLGSDSRGVGRSPRPPQPPPSPDVLPNGPXXXXXXVPVYLSSPPPEAEDAVLRHSEATAVAAAAGA-MDVATDGASRQLSDSAASQGGGRNKHKRSLSDVPPADAAXXXXXXXXXXANELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGRQKHTFFVASGVCLLSTRPEIGAMRRALAAYWAAHGDEILARGSATEGGAAAAHAGGEGPALAAREXXXXXXXXXHDRGGSDGEVAEAPSEGSGEVEXXXXXEEKKHVGAWTEMDPSTLRDVLVPFVTQERRDEKYKEGQAHRYDKERRRSAGASQDRTSAADVLTKSFSAGSLRHPGQSSGATHGQGDRAE 1328
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15566.4135.1 vs. uniprot
Match: A0A6H5JHW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW4_9PHAE)

HSP 1 Score: 1170 bits (3027), Expect = 0.000e+0
Identity = 776/977 (79.43%), Postives = 797/977 (81.58%), Query Frame = 2 
Query:    2 QHLSLPRMARRLGRRPSHSSGSLVPGEPTEEADSFAGVGGSTQGGGGGVAGDLDVAAPPDVLGSRSGFGVQDTQGIGPGPTG--AREDGGGGVVGEGIRGCAEWAVSFSGSLQQGIATVQ-----------TEHAVCVAPRNLGMDGPPEGLEAFFCPGLPASGEAPRACPPLSGGKSSLGVGKGGRGSCSSRGGCFGRGVPPPPPRLFTFAAPGRNGTGTFYGACLSVFRPVSQWVGGEPAADVAAHGINRGSSNSPPPCXXXXXXXXXXXT-SAPDMQAPLVEEASKAGIDGIMGDASSRTETASHVDGGAATAASVGEERAPARLSGVGDVSDVLDGEVQTVDGGAQGNMGDNKAPSEEGAIEREDLGKLSADGGVSSTAERETAYGVVEDAVLDDATEAKEAAAVDAAATAQKKKEAANTTTLDKTPSMLEMLKLKKAMGIFGKSSSVGQNKVSPSPASTAPMSSLPPSVATTEVAPESDTEELRVEVDGQGADEAPGGLEGSGGTGAVAKTNXXXXXXXXXXMMDLSSRFRLGMGMFGSGKASPRVVTGSGFSPKLGTQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVGKFSSYARRAGNFLGSDSRGVGRSPRPTQPPPSPDVLPNGPPPPSPLVPVYLSSPPPEAE--DAVLGHGEATAVXXXXXXX-VDVGTDGASRQLSDSAASXXXXXXXXXXXXXDVPXXXXXXXXXXXXXDANELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNG-RQKHTFFVASGVCLLSTRPEIGAMRRALAAYWAAHGDGILARGSAIEGGAAAAHAGGEGPALAAPQSGXXXXXXDRGRSGSDGEVTEATTEVSGEAEDEQEQEEKKDVGAWTEMDPSTLRDVLVPFVTRERREEKDREGQAHRDDKERRRSAGASQDRTSAADVLTKSFSAGSLRHPGQSRGATNGQRDRAE 2878
            QHLSLPR ARRLGRRP+HSSGSLVPGEPTEEADS AGVGGSTQGGGGGVAGDLDVA+PPDVLGSRSGFGVQ+TQGI PGPTG  AREDGGGGVVGEGIRGCAEWAVSFSGSL+QGI TVQ           TEHAVCVAPRNLG+D  PEGLEAF+CPGLPASGEAPRACPP SGGKSS GVGKGGRGS SSRGGCFG GVPPPPPRLFTFAAPGR+GTGTFYGACLSVFRPVSQWVGGEPAADVAA G NRGSSNSPPPC        XXX  +APD QAPLVEE SK  I+GI+G +SSRTETASHVD GAATAASVGE RAPARLSGVGDVS V+DGEVQTVD GAQGNMGDNKAPSEEGAIE+EDLGKLSADGGVSSTA RET  GVVEDAVLDDATEA+EAA V A       KEAANTTTLDKTPSMLEMLKLKK MGIFG+SSSVGQNKVSPSP STAPMSSLPPSV  TEVAPESDTEELRVEVDGQGADEA GGLEGSGGTGAV    XXXXXXXXXXMMDLSSRFRLGMGMFGSGKASPRVVTGSGFS KLGTQAA XXXXXXXXXXXXXXX              GGVGKFSSYARRAGNFLGSDSRGVGRSPRPTQPPPSPDVLPNGPPPPSPLVPVYLSSPPPEAE  DAVL HG+ATA XXXXXX  VDV TDG SRQLSDSAAS             DVP             DANEL  XXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXX        G+G RQKHTFFVASGVCLLSTRPEIGAMRRALAAYWAAHGD ILARGSA EG                    XXXX  D GRSGSDGEVTEA +E SGE        E KDVGAWTEMDPSTLR VLVPFVTRERREEKDRE QAH +      SAGA+Q+RTSAADVLTKSFSAGSLRH GQS GATNGQ DRAE
Sbjct: 1139 QHLSLPRTARRLGRRPNHSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGDLDVASPPDVLGSRSGFGVQETQGIEPGPTGDRAREDGGGGVVGEGIRGCAEWAVSFSGSLRQGIMTVQVWGGHEARGRCTEHAVCVAPRNLGLDVLPEGLEAFYCPGLPASGEAPRACPPPSGGKSSSGVGKGGRGSGSSRGGCFGPGVPPPPPRLFTFAAPGRSGTGTFYGACLSVFRPVSQWVGGEPAADVAARGTNRGSSNSPPPCPIATAATVXXXXXTAPDTQAPLVEEESKTRIEGIVGASSSRTETASHVDAGAATAASVGEARAPARLSGVGDVSGVVDGEVQTVDDGAQGNMGDNKAPSEEGAIEKEDLGKLSADGGVSSTAVRETDSGVVEDAVLDDATEAREAAVVGAXXXXXXXKEAANTTTLDKTPSMLEMLKLKKGMGIFGRSSSVGQNKVSPSPTSTAPMSSLPPSVTKTEVAPESDTEELRVEVDGQGADEATGGLEGSGGTGAVXXXXXXXXXXXXXXMMDLSSRFRLGMGMFGSGKASPRVVTGSGFSRKLGTQAAAXXXXXXXXXXXXXXXSAPVEASPTPSSSSGGVGKFSSYARRAGNFLGSDSRGVGRSPRPTQPPPSPDVLPNGPPPPSPLVPVYLSSPPPEAETDDAVLRHGDATAXXXXXXXGAVDVATDGNSRQLSDSAASEGGGRNKHKRSLSDVPSADAASAAAAAVVDANELXXXXXXXXXXXXXXXSMCAESXXXXXXXXXXXXXXXXXXXRRQGESADGSGGRQKHTFFVASGVCLLSTRPEIGAMRRALAAYWAAHGDDILARGSATEGXXXXXXXXXXXXXXXXXXX-XXXXSADHGRSGSDGEVTEAPSEGSGEXXXXXXXXENKDVGAWTEMDPSTLRAVLVPFVTRERREEKDRESQAHHNXXXXXXSAGAAQERTSAADVLTKSFSAGSLRHSGQSGGATNGQGDRAE 2114
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15566.4135.1 vs. uniprot
Match: A0A6H5KG55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG55_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 2.740e-55
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 2 
Query:    2 QHLSLPRMARRLGRRPSHSSGSLVPGEPTEEADSFAGVGGSTQGGGGGVAGDLDVAAPPDVLGSRSGFGVQDTQGIGPGPTGAREDGGGGVVGEGIRGCAEWAVSFSGSLQQGIATVQ 355
            QHLSL R A+RLGRRPSHSSGSLVPGEPTEEADS AGVGGSTQGGGGGVAGD DVA+PP+VLGSRSGFGVQ+TQGI PGPTGAREDGGGGVVGEGI+GCAEW VSFSGSL+QGI TVQ
Sbjct:   54 QHLSLTRTAQRLGRRPSHSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGDSDVASPPNVLGSRSGFGVQETQGIEPGPTGAREDGGGGVVGEGIKGCAEWTVSFSGSLRQGIMTVQ 171
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15566.4135.1 vs. uniprot
Match: A0A835ZHK7_9STRA (Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.580e-5
Identity = 39/120 (32.50%), Postives = 50/120 (41.67%), Query Frame = 2 
Query:  299 AEWAVSFSGSLQ-QGIATVQTEHAVCVAPRNLGMDGPPEGLEAFFCPGLPASGEAPRACPPLSGGKSSLGVGKGGRGSCSSRGGCFGRGVPPPPPRLFTFAAPGRNGTGTFYGACLSVFR 655
            A+W ++F      +G  +     A  ++ R       P+G   F CP LP +G     C                             G  PPPPRLFTFA PG++GT T YGACL VFR
Sbjct:  925 ADWVLAFDAQCDARGAVSCAITQAAALSLRAAAAARAPKGAAPFLCPDLPPAGATGGPCV----------------------------GDAPPPPRLFTFAMPGQDGTDTLYGACLVVFR 1016
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15566.4135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LH28_ECTSI0.000e+083.42UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHW4_9PHAE0.000e+079.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG55_9PHAE2.740e-5588.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHK7_9STRA3.580e-532.50Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15566contigEcto-sp13_S_contig15566:1..4129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score1188.3
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LH28
Model size2878
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3569@1,KOG3569@2759
Cds size2856
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.0046458-CDS-Ecto-sp13_S_contig15566:0..10791681462825.0046458-CDS-Ecto-sp13_S_contig15566:0..1079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15566 1..1079 -
1681462825.0162702-CDS-Ecto-sp13_S_contig15566:1448..25931681462825.0162702-CDS-Ecto-sp13_S_contig15566:1448..2593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15566 1449..2593 -
1681462825.0245616-CDS-Ecto-sp13_S_contig15566:3044..33431681462825.0245616-CDS-Ecto-sp13_S_contig15566:3044..3343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15566 3045..3343 -
1681462825.032743-CDS-Ecto-sp13_S_contig15566:3774..41071681462825.032743-CDS-Ecto-sp13_S_contig15566:3774..4107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15566 3775..4107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462825.040967-UTR-Ecto-sp13_S_contig15566:4107..41291681462825.040967-UTR-Ecto-sp13_S_contig15566:4107..4129Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15566 4108..4129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15566.4135.1prot_Ecto-sp13_S_contig15566.4135.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15566 1..4107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15566.4135.1

>prot_Ecto-sp13_S_contig15566.4135.1 ID=prot_Ecto-sp13_S_contig15566.4135.1|Name=mRNA_Ecto-sp13_S_contig15566.4135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=952bp
MARRLGRRPSHSSGSLVPGEPTEEADSFAGVGGSTQGGGGGVAGDLDVAA
PPDVLGSRSGFGVQDTQGIGPGPTGAREDGGGGVVGEGIRGCAEWAVSFS
GSLQQGIATVQTEHAVCVAPRNLGMDGPPEGLEAFFCPGLPASGEAPRAC
PPLSGGKSSLGVGKGGRGSCSSRGGCFGRGVPPPPPRLFTFAAPGRNGTG
TFYGACLSVFRPVSQWVGGEPAADVAAHGINRGSSNSPPPCPTSAATATA
TTTSAPDMQAPLVEEASKAGIDGIMGDASSRTETASHVDGGAATAASVGE
ERAPARLSGVGDVSDVLDGEVQTVDGGAQGNMGDNKAPSEEGAIEREDLG
KLSADGGVSSTAERETAYGVVEDAVLDDATEAKEAAAVDAAATAQKKKEA
ANTTTLDKTPSMLEMLKLKKAMGIFGKSSSVGQNKVSPSPASTAPMSSLP
PSVATTEVAPESDTEELRVEVDGQGADEAPGGLEGSGGTGAVAKTNTTAA
AAASPSMMDLSSRFRLGMGMFGSGKASPRVVTGSGFSPKLGTQAAAATAA
AAAASTSPAAGSAPVEPSPTPSSSSGGVGKFSSYARRAGNFLGSDSRGVG
RSPRPTQPPPSPDVLPNGPPPPSPLVPVYLSSPPPEAEDAVLGHGEATAV
AAAAAGAVDVGTDGASRQLSDSAASGAGGRNKHKRSLSDVPPADAASAAA
AAVVDANELTSAASSGVGDASKGRSMSAASSGVGSSSSSSGSGPGARRQG
ESADGSGGNGRQKHTFFVASGVCLLSTRPEIGAMRRALAAYWAAHGDGIL
ARGSAIEGGAAAAHAGGEGPALAAPQSGGSGGSTDRGRSGSDGEVTEATT
EVSGEAEDEQEQEEKKDVGAWTEMDPSTLRDVLVPFVTRERREEKDREGQ
AHRDDKERRRSAGASQDRTSAADVLTKSFSAGSLRHPGQSRGATNGQRDR
AE
back to top

mRNA from alignment at Ecto-sp13_S_contig15566:1..4129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15566.4135.1 ID=mRNA_Ecto-sp13_S_contig15566.4135.1|Name=mRNA_Ecto-sp13_S_contig15566.4135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15566:1..4129- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGCACTTGTCTCTCCCTCGCATGGCGCGAAGGTTAGGCCGTCGGCCCA
GCCACTCGTCAGGCTCTCTCGTCCCAGGAGAGCCCACCGAAGAAGCAGAT
TCTTTCGCAGGCGTTGGCGGCAGCACGCAAGGAGGCGGCGGCGGCGTAGC
CGGCGACTTGGATGTAGCAGCTCCCCCTGACGTCCTGGGAAGTCGCTCGG
GATTCGGTGTACAAGATACCCAGGGGATAGGTCCAGGGCCTACAGGGGCG
AGAGAAGACGGTGGTGGTGGGGTTGTCGGGGAAGGTATCAGGGGCTGCGC
AGAATGGGCAGTTTCCTTCTCGGGGTCCCTGCAGCAAGGAATCGCGACGG
TACAGGTGTGTGGGGGGCACGATGCTAAGGGGCGGTGTGTAGGTGGTAAG
GTTGCACGGGGCGAGGTTGTCTTGTCGTAAAAGGCGTGCTCTGCTCTCGG
GGACAGTGTCGCTGCCGCCTTTCCTAGAAGTGTGCAGCTCACGTGTAGCT
GTGTATGCGTCAGTAGTTTTGTCTTTGATTGCGTTCCATGTTCTTTTTTC
AGAGCCTGCCACATGATACCCCGTTCGACATGGGGAGCTTTGCGCGGTGG
GAACTACTGTATGGCGTTATTTTCGATGTAGCACTTCAACCATTGTCATG
TTGCGGACGAAAGCTGTCTTGGGTCGAAGAAGCCACAACTGCTGTTTGCA
CACCCCAATGGCACGTAACACGTATCGTTCACTCTCTGTGCGGTTCGTGT
CCGACGCGTGCACCGGTTGACCCCCCCCCCATCCAGACGGAACACGCGGT
GTGCGTCGCCCCCCGCAACCTCGGTATGGACGGACCGCCGGAAGGCCTGG
AGGCGTTTTTTTGCCCCGGTCTGCCGGCCAGCGGAGAGGCCCCTCGTGCG
TGCCCCCCTCTAAGCGGTGGGAAATCATCATTGGGGGTGGGGAAAGGTGG
CCGTGGAAGCTGCAGCAGTCGGGGGGGCTGCTTTGGACGGGGCGTGCCAC
CTCCTCCGCCTCGACTGTTCACGTTCGCTGCCCCCGGGCGTAACGGGACC
GGCACCTTCTACGGCGCATGCCTCTCGGTGTTCCGGTATGCTACAGTTTT
GTGAAATGAGTCGATGTGTTCACATGATAAGCTTCCCCCCCGCATCTAGC
CGTGAACCTTGCGCGTGTTCTTCAGATGTCGATGGGTGTGCTACCGTTTG
TTTCCGGCGGCGTTTGTGTGGGTGTGGAGGAGAGGAAGTCGAATATTGTA
CCGGCGTAGGCGCCCATGGTGAACGAGAGGATGCCAACAGGCGTGGGTGA
TGAGATGCATCTGCGATATGCAGGCATCATGCCCTGGGGTAGAGCATGCC
ACACTTTGCGTAGAGAGCGAATGGCACACAGATCTGTGTGATCATCAGGC
AGCGCCTTGTGTAGTCCATGTACATTAACCCCGCCCTTTTCCGTTTCTCT
GAGTGTGGGCTGCAAGTCCCACCCCCTATACCCCCCCAACCCCCCCCCTC
GTCCGTTTCCTCCCCACCTGTTGTTTGCCGAGGTAGACCCGTGTCGCAGT
GGGTAGGGGGCGAGCCTGCTGCCGATGTTGCTGCACACGGAATCAACCGC
GGCAGCTCGAATTCACCTCCCCCGTGTCCCACATCAGCGGCAACGGCGAC
AGCAACAACCACGAGTGCGCCAGATATGCAAGCACCTCTCGTGGAGGAAG
CAAGCAAGGCTGGGATCGACGGCATCATGGGTGATGCATCTAGCCGTACG
GAGACGGCCTCGCACGTAGACGGTGGGGCTGCTACTGCTGCTTCTGTTGG
AGAAGAGCGTGCTCCTGCTCGGTTGTCAGGCGTAGGAGATGTTTCAGACG
TGTTGGACGGGGAGGTGCAGACTGTGGACGGCGGAGCGCAGGGCAACATG
GGGGACAACAAGGCGCCATCTGAGGAAGGGGCGATAGAGAGAGAGGACTT
GGGGAAGCTGAGTGCTGATGGTGGTGTCAGCTCGACAGCGGAGAGGGAGA
CCGCCTACGGTGTCGTCGAAGATGCGGTGCTCGACGACGCGACCGAGGCA
AAAGAGGCCGCCGCCGTTGATGCTGCCGCTACGGCGCAGAAGAAAAAAGA
GGCTGCGAACACGACAACCTTGGACAAGACCCCGTCCATGCTCGAGATGC
TCAAGCTGAAGAAGGCCATGGGGATCTTCGGCAAGTCTTCATCGGTGGGC
CAGAATAAGGTGTCCCCAAGCCCTGCTTCGACAGCGCCGATGTCTAGCCT
GCCGCCCTCCGTTGCCACAACGGAAGTGGCGCCAGAGTCAGACACGGAGG
AGTTGCGAGTAGAGGTCGACGGGCAGGGGGCAGACGAAGCACCCGGTGGG
CTTGAGGGCAGTGGCGGTACGGGCGCGGTGGCCAAGACAAACACGACGGC
AGCGGCGGCGGCTTCACCATCCATGATGGACCTCTCGTCCAGGTTTAGGC
TAGGCATGGGCATGTTCGGAAGCGGCAAGGCTTCACCAAGGGTGGTGACG
GGGTCGGGGTTCAGCCCGAAGTTGGGCACACAAGCCGCCGCCGCCACCGC
CGCTGCCGCTGCTGCCAGCACTTCCCCGGCTGCGGGTAGTGCGCCTGTGG
AACCGTCGCCGACGCCGTCCTCGTCTTCTGGCGGTGTGGGAAAGTTTTCG
AGCTACGCCCGTCGCGCTGGAAATTTCTTAGGTGATGATACCGCAAATTT
TCCAAATCCAAGTGGTGATCTTTGTTCGCAGCTGCCGCTACCCTACCCTA
TCCGGGTTGTACTGTCAGCCGAAAGCCTCATGATGCCTGTCATGTTTACA
CATATGTCAGCAGCAAGTAGGTCGTTGTGCGGCAGCGCTCTAGGAAAATT
ATTTCCCCCCACGCAAAGATGGTGACACTGCCAGCCTGGTTCATTCCTGT
AGATAGCCCGGGCCGGTGAAAACCCGGCACATCGCTCAGTCCCAGTAATG
TAGGAATGCGAGGTCCATCTTCTACCGACTACGGCATGCGTCGACACGAG
TACCCCCCCCCTCCCCCCTCCCCCCCTCTCCTGTCCAACTCCCACCATAG
GCTCCGATTCCAGAGGAGTCGGCCGTTCCCCGCGGCCCACCCAGCCGCCG
CCGTCCCCCGACGTGCTGCCCAACGGACCGCCACCGCCGTCGCCTCTAGT
TCCGGTCTACCTCTCCTCCCCACCGCCAGAAGCCGAGGACGCAGTCCTCG
GACACGGCGAGGCTACGGCTGTGGCGGCGGCGGCGGCGGGGGCCGTTGAC
GTCGGTACGGATGGTGCTTCTCGACAGCTCTCAGACTCAGCCGCAAGCGG
AGCGGGTGGAAGGAACAAGCACAAGCGTTCGCTCTCGGACGTGCCGCCAG
CCGACGCGGCTTCGGCAGCGGCGGCGGCGGTCGTGGACGCGAACGAACTG
ACTTCGGCTGCTTCGTCGGGAGTGGGTGACGCTTCCAAAGGAAGGTCAAT
GAGCGCCGCGTCCAGCGGTGTCGGCAGCAGCAGCAGCAGCAGTGGCTCAG
GGCCCGGGGCGCGGAGACAAGGCGAGTCGGCCGACGGCAGCGGAGGCAAT
GGCCGTCAGAAGCACACGTTTTTCGTGGCCAGCGGAGTGTGCCTCCTTTC
AACTCGCCCCGAGATAGGGGCGATGCGACGGGCGCTGGCGGCGTACTGGG
CGGCCCACGGGGACGGCATATTGGCCAGAGGGTCCGCGATAGAGGGCGGT
GCTGCTGCCGCACACGCGGGGGGAGAAGGTCCGGCTTTGGCTGCTCCCCA
ATCGGGCGGCAGCGGCGGCAGCACCGACCGCGGTCGCAGTGGCAGTGATG
GCGAGGTGACAGAGGCAACTACCGAAGTTTCCGGTGAGGCCGAAGACGAA
CAAGAGCAAGAAGAGAAGAAGGACGTCGGGGCATGGACGGAGATGGACCC
CAGCACGCTCCGAGACGTGTTGGTACCGTTTGTGACACGAGAGCGGCGGG
AGGAGAAAGACAGAGAGGGCCAAGCCCATCGCGACGACAAGGAACGCCGG
CGGTCGGCGGGCGCTTCGCAGGACCGGACGAGTGCGGCGGATGTCTTGAC
GAAGTCCTTTTCCGCTGGAAGCCTCAGGCATCCCGGCCAATCCAGGGGGG
CGACAAACGGGCAACGGGACCGAGCAGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15566:1..4129-

>mRNA_Ecto-sp13_S_contig15566.4135.1 ID=mRNA_Ecto-sp13_S_contig15566.4135.1|Name=mRNA_Ecto-sp13_S_contig15566.4135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15566:1..4129- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGAAGGTTAGGCCGTCGGCCCAGCCACTCGTCAGGCTCTCTCGT
CCCAGGAGAGCCCACCGAAGAAGCAGATTCTTTCGCAGGCGTTGGCGGCA
GCACGCAAGGAGGCGGCGGCGGCGTAGCCGGCGACTTGGATGTAGCAGCT
CCCCCTGACGTCCTGGGAAGTCGCTCGGGATTCGGTGTACAAGATACCCA
GGGGATAGGTCCAGGGCCTACAGGGGCGAGAGAAGACGGTGGTGGTGGGG
TTGTCGGGGAAGGTATCAGGGGCTGCGCAGAATGGGCAGTTTCCTTCTCG
GGGTCCCTGCAGCAAGGAATCGCGACGGTACAGACGGAACACGCGGTGTG
CGTCGCCCCCCGCAACCTCGGTATGGACGGACCGCCGGAAGGCCTGGAGG
CGTTTTTTTGCCCCGGTCTGCCGGCCAGCGGAGAGGCCCCTCGTGCGTGC
CCCCCTCTAAGCGGTGGGAAATCATCATTGGGGGTGGGGAAAGGTGGCCG
TGGAAGCTGCAGCAGTCGGGGGGGCTGCTTTGGACGGGGCGTGCCACCTC
CTCCGCCTCGACTGTTCACGTTCGCTGCCCCCGGGCGTAACGGGACCGGC
ACCTTCTACGGCGCATGCCTCTCGGTGTTCCGACCCGTGTCGCAGTGGGT
AGGGGGCGAGCCTGCTGCCGATGTTGCTGCACACGGAATCAACCGCGGCA
GCTCGAATTCACCTCCCCCGTGTCCCACATCAGCGGCAACGGCGACAGCA
ACAACCACGAGTGCGCCAGATATGCAAGCACCTCTCGTGGAGGAAGCAAG
CAAGGCTGGGATCGACGGCATCATGGGTGATGCATCTAGCCGTACGGAGA
CGGCCTCGCACGTAGACGGTGGGGCTGCTACTGCTGCTTCTGTTGGAGAA
GAGCGTGCTCCTGCTCGGTTGTCAGGCGTAGGAGATGTTTCAGACGTGTT
GGACGGGGAGGTGCAGACTGTGGACGGCGGAGCGCAGGGCAACATGGGGG
ACAACAAGGCGCCATCTGAGGAAGGGGCGATAGAGAGAGAGGACTTGGGG
AAGCTGAGTGCTGATGGTGGTGTCAGCTCGACAGCGGAGAGGGAGACCGC
CTACGGTGTCGTCGAAGATGCGGTGCTCGACGACGCGACCGAGGCAAAAG
AGGCCGCCGCCGTTGATGCTGCCGCTACGGCGCAGAAGAAAAAAGAGGCT
GCGAACACGACAACCTTGGACAAGACCCCGTCCATGCTCGAGATGCTCAA
GCTGAAGAAGGCCATGGGGATCTTCGGCAAGTCTTCATCGGTGGGCCAGA
ATAAGGTGTCCCCAAGCCCTGCTTCGACAGCGCCGATGTCTAGCCTGCCG
CCCTCCGTTGCCACAACGGAAGTGGCGCCAGAGTCAGACACGGAGGAGTT
GCGAGTAGAGGTCGACGGGCAGGGGGCAGACGAAGCACCCGGTGGGCTTG
AGGGCAGTGGCGGTACGGGCGCGGTGGCCAAGACAAACACGACGGCAGCG
GCGGCGGCTTCACCATCCATGATGGACCTCTCGTCCAGGTTTAGGCTAGG
CATGGGCATGTTCGGAAGCGGCAAGGCTTCACCAAGGGTGGTGACGGGGT
CGGGGTTCAGCCCGAAGTTGGGCACACAAGCCGCCGCCGCCACCGCCGCT
GCCGCTGCTGCCAGCACTTCCCCGGCTGCGGGTAGTGCGCCTGTGGAACC
GTCGCCGACGCCGTCCTCGTCTTCTGGCGGTGTGGGAAAGTTTTCGAGCT
ACGCCCGTCGCGCTGGAAATTTCTTAGGCTCCGATTCCAGAGGAGTCGGC
CGTTCCCCGCGGCCCACCCAGCCGCCGCCGTCCCCCGACGTGCTGCCCAA
CGGACCGCCACCGCCGTCGCCTCTAGTTCCGGTCTACCTCTCCTCCCCAC
CGCCAGAAGCCGAGGACGCAGTCCTCGGACACGGCGAGGCTACGGCTGTG
GCGGCGGCGGCGGCGGGGGCCGTTGACGTCGGTACGGATGGTGCTTCTCG
ACAGCTCTCAGACTCAGCCGCAAGCGGAGCGGGTGGAAGGAACAAGCACA
AGCGTTCGCTCTCGGACGTGCCGCCAGCCGACGCGGCTTCGGCAGCGGCG
GCGGCGGTCGTGGACGCGAACGAACTGACTTCGGCTGCTTCGTCGGGAGT
GGGTGACGCTTCCAAAGGAAGGTCAATGAGCGCCGCGTCCAGCGGTGTCG
GCAGCAGCAGCAGCAGCAGTGGCTCAGGGCCCGGGGCGCGGAGACAAGGC
GAGTCGGCCGACGGCAGCGGAGGCAATGGCCGTCAGAAGCACACGTTTTT
CGTGGCCAGCGGAGTGTGCCTCCTTTCAACTCGCCCCGAGATAGGGGCGA
TGCGACGGGCGCTGGCGGCGTACTGGGCGGCCCACGGGGACGGCATATTG
GCCAGAGGGTCCGCGATAGAGGGCGGTGCTGCTGCCGCACACGCGGGGGG
AGAAGGTCCGGCTTTGGCTGCTCCCCAATCGGGCGGCAGCGGCGGCAGCA
CCGACCGCGGTCGCAGTGGCAGTGATGGCGAGGTGACAGAGGCAACTACC
GAAGTTTCCGGTGAGGCCGAAGACGAACAAGAGCAAGAAGAGAAGAAGGA
CGTCGGGGCATGGACGGAGATGGACCCCAGCACGCTCCGAGACGTGTTGG
TACCGTTTGTGACACGAGAGCGGCGGGAGGAGAAAGACAGAGAGGGCCAA
GCCCATCGCGACGACAAGGAACGCCGGCGGTCGGCGGGCGCTTCGCAGGA
CCGGACGAGTGCGGCGGATGTCTTGACGAAGTCCTTTTCCGCTGGAAGCC
TCAGGCATCCCGGCCAATCCAGGGGGGCGACAAACGGGCAACGGGACCGA
GCAGAA
back to top