mRNA_Ecto-sp13_S_contig15565.4134.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15565.4134.1
Unique NamemRNA_Ecto-sp13_S_contig15565.4134.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15565.4134.1 vs. uniprot
Match: D7G1B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B0_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 1.670e-107
Identity = 163/171 (95.32%), Postives = 167/171 (97.66%), Query Frame = 1 
Query:    1 VRTAVVVQANEAGLTEGVQWYLPNVAAFDHVFDRNSTYRDASLAFDMRGALGVRACTPRTGKMAQDTLTLANVNESGLQGITLDSCPFPRNGSWADGSLMRDSLLSASGTLVGATGPLGMSVGEDDDGRDANTVTFCAVNLKPDATHGARFEVISTLDGATLESEDGEGFQ 513
            +RT V+ QANEAGLTEGVQWYLPNVAAFDHVFDRNSTYRDASLAFDMRGALGVRACTPRTGKMAQDTLTLANVN SGLQGI LDSCPFPRNGSWADG+LMRDSLLSASGTLVGATGPLGMSVGEDDDGRDA+TVTFCAVNLKPDATHGARFEVISTLDGATLESEDGEGFQ
Sbjct:  166 IRT-VLSQANEAGLTEGVQWYLPNVAAFDHVFDRNSTYRDASLAFDMRGALGVRACTPRTGKMAQDTLTLANVNGSGLQGIALDSCPFPRNGSWADGALMRDSLLSASGTLVGATGPLGMSVGEDDDGRDADTVTFCAVNLKPDATHGARFEVISTLDGATLESEDGEGFQ 335
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BLAST of mRNA_Ecto-sp13_S_contig15565.4134.1 vs. uniprot
Match: A0A6H5JES6_9PHAE (PBPe domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES6_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.270e-63
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:  187 MAQDTLTLANVNESGLQGITLDSCPFPRNGSWADGSLMRDSLLSASGTLVGATGPLGMSVGEDDDGRDANTVTFCAVNLKPDATHGARFEVISTLDGATLESEDGEGFQ 513
            MAQDTLTLANVN+SGLQGI LDSCPFPRNGSWADG+LMRDSLLSASGTLVGATGPLGMSVGEDDDGRD +TVTFCAVNLKPDATHGARFEVISTLDGATL+SEDGEGFQ
Sbjct:    1 MAQDTLTLANVNDSGLQGIVLDSCPFPRNGSWADGALMRDSLLSASGTLVGATGPLGMSVGEDDDGRDVDTVTFCAVNLKPDATHGARFEVISTLDGATLDSEDGEGFQ 109
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BLAST of mRNA_Ecto-sp13_S_contig15565.4134.1 vs. uniprot
Match: A0A6H5J962_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J962_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.750e-30
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:    1 VRTAVVVQANEAGLTEGVQWYLPNVAAFDHVFDRNSTYRDASLAFDMRGALGVRACTPRTGKM 189
            VRT V+ QANEAGLTEGVQWYLPNVAAFDHVFDRNSTYRDASLAFDMRGALGVRACTPRTGK+
Sbjct:  182 VRT-VLSQANEAGLTEGVQWYLPNVAAFDHVFDRNSTYRDASLAFDMRGALGVRACTPRTGKV 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15565.4134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1B0_ECTSI1.670e-10795.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JES6_9PHAE1.270e-6394.50PBPe domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5J962_9PHAE1.750e-3093.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15565contigEcto-sp13_S_contig15565:1120..3654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score327.0
Seed ortholog evalue5.2e-87
Seed eggNOG ortholog2880.D7G1B0
Model size513
KEGG koko:K05313
KEGG TC1.A.10.1.14,1.A.10.1.15,1.A.10.1.16,1.A.10.1.17
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ionotropic glutamate receptor activity
EggNOG OGsKOG1052@1,KOG1052@2759
Ec32 ortholog descriptionIonotropic glutamate receptor
Ec32 orthologEc-12_005170.1
Cds size513
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.9619074-CDS-Ecto-sp13_S_contig15565:1119..13051681462824.9619074-CDS-Ecto-sp13_S_contig15565:1119..1305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15565 1120..1305 +
1681462824.9719808-CDS-Ecto-sp13_S_contig15565:2919..29871681462824.9719808-CDS-Ecto-sp13_S_contig15565:2919..2987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15565 2920..2987 +
1681462824.98007-CDS-Ecto-sp13_S_contig15565:3395..36541681462824.98007-CDS-Ecto-sp13_S_contig15565:3395..3654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15565 3396..3654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15565.4134.1prot_Ecto-sp13_S_contig15565.4134.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15565 1120..3654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15565.4134.1

>prot_Ecto-sp13_S_contig15565.4134.1 ID=prot_Ecto-sp13_S_contig15565.4134.1|Name=mRNA_Ecto-sp13_S_contig15565.4134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
VRTAVVVQANEAGLTEGVQWYLPNVAAFDHVFDRNSTYRDASLAFDMRGA
LGVRACTPRTGKMAQDTLTLANVNESGLQGITLDSCPFPRNGSWADGSLM
RDSLLSASGTLVGATGPLGMSVGEDDDGRDANTVTFCAVNLKPDATHGAR
FEVISTLDGATLESEDGEGFQ
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mRNA from alignment at Ecto-sp13_S_contig15565:1120..3654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15565.4134.1 ID=mRNA_Ecto-sp13_S_contig15565.4134.1|Name=mRNA_Ecto-sp13_S_contig15565.4134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2535bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15565:1120..3654+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGCACCGCGGTCGTCGTTCAGGCCAATGAGGCCGGCCTGACGGAGGG
GGTGCAGTGGTACCTGCCCAACGTGGCGGCCTTCGACCACGTCTTCGACC
GGAACTCCACGTACCGCGACGCGAGCCTCGCCTTCGACATGCGAGGCGCG
CTCGGCGTTCGGGCCTGCACGCCCCGCACAGGCAAGGTTTGATAGCTCTC
TTCTTGGGTCTTGATCTTCTGGCCCGGCCTTCTGGCCCGGCCTTCATTCC
GGCGTCTCTCTAGGCTTTTGTTATTTGTCGGACTTTGGCGTCCACGCTTT
CTACTCCGCCCCAAGATTCTCCAACTGTAACCGATTTCGCAGGAGCTGTC
TCTGCCAGTCTCGTTTTGTGTCGGGTTTTTGCTGTTTGCGTCTATCGCGT
GTTGGTTTATTGCGGTGTATCATTCCCGGCGCGTTGATTTTACCAGCGTC
TGCTTATCCAAACGTTCCGTTCACGACGTGTGGATCACCGTTCTTTGGCG
ACGGCGGCGGCTCCGCATGTGCCTCCCCTCACCCCTCCTCCCGCCCTCCC
GCCTTCCCTCCGCGTCCACATGCCCTCCATCCCATCGTGTTTGCCTCTTT
GTCTTTTTTGTCTTGCTTTTTTCTTCAGGGGATGGGGCGACGATGGCAGA
AGAACTCTCGCAAGAGTGGGTGCGGCTGGACGCAGACGAGTACCCCGGTG
CAGGGCCCGACGGGGTCACCGCGGACGGGCTGATCGACCCCGTCCTGGCC
TTCGCGTACGACTCGATATTTTTGGCGGCTGCGGCGGCGCAGGTGCGTCG
ACGAGGCGGGGTGGGTAACGCAGGCTTCTCTCTCGCCCCCCCCCCGCGTT
TTTGCCTCCCGCGTGTAATGTTGCGTCAGGCGGGGATGGTTTAGGAAGGA
TGGAATGAAGGGTCATCCTTGTCTCTGATCGTACTGCCCTTGGGATTTCT
TCGTGTGATGAAGCGATACAGAGCGATTATCGGAACGGGCATAACTACAG
TCAGTCGCTCGTGTGTGTGTGTGCGTGTGTATCTTCATTGTTAGCATTAA
CCGCGGTAACCGGCTCACCAATGAAAAGACGTGGGTCTCATTGCGGTTGA
AAGGAAAAAGTGCTCCTAAAATGCCATGATCTGGGACTCCGTAAGAGGCG
TCATGTGCGGGCGTGTTGTTTTTCCATTTATTCTGGACGTCAGTTTCATC
AAACCTTTTGGTACTGTTGTTTAGAAGGACCAGCCCCAGTCGGGATGCCA
CAGCCGACGCTGTCGTACTGCGCTAGCGGAAGCAGCGGGGTACGATTTGA
TGTGCAGTGGTTGGGTTGGTTGCGCCAGTAGCAGCAGCAGCAAATGCCGC
AGTTACTAGATGCGGTAGCGCTTTTACATTGGTCTTGTCCTTCCTTGAAC
GTGATGCTTTTCGCTCGATGGGTTTCGAGCGGGAAGAGAATAGGTTTTGC
TTGAGATGGGACGCCGGGGTGGTACGTGTGTGGTTTTTTTCGTTGTTAGC
ATCGACCGCGCTAACCGGCTGACCCACGAGAAGACATCAGTCTCAGTGCG
GTTGAAAGCACACGTATGTGTATGTGTGTTTGTCGTCTTCTCTGTTGATG
CTGACAGGCGGCAGCGCTCTCTCTCCGTCACTCACTCCCTTACCCACTCC
CCTCACTCCCTTACTCTTCTGTGTCGGTTGTGCCCCGGCACACCCCTTCG
CCCGGCCAATTGTCCCACCCGTCTCGTTAAGCTGAATTTGTAACCTCCCC
CCTTGTCCGCCTGCTTGTCGCGTCCGTCACTTCGTCCGCGGTGGCGACAG
ATGGCGCAGGACACGCTCACTTTGGCGAACGTGAACGAATCGGGGCTCCA
AGGGATAACGCTGGACAGGTGAGACACGTGCTTGGAGAATTATTTCCTGT
TTTATCAATGCGTGAGGTGTGTGTGTGTGTGTGTCTTTTTTTCCAGTGTT
ACCATCGACCTCGCTAACCGGCTGACCGTTGAAAAAAAGTCAGCCTTGCA
GTGTGACATGTTGTTCTGTTTTCTCTGGCGGGAAAGAAAGAATCAAGGTT
CTGCGAAAGAGGCGTATGCAAGGAGGTGTGTTTGCCGCCAGGGGGGGGTC
TGTTGTGGCACAAGCCCGCTTGCCCTCCTCTTCCTCCTCCTGCCCTTGCT
CCTGTCGTGTACATCCACATTCACCTCAACGAATCCCAACATCCAACGAC
CGTCACGCCCGCGTCCACCTGCTGTCACTACGCTGGTGACCATCGCCGCC
GCCGCCGCCGCCGCGAAAATCACCAGCTGCCCGTTTCCCAGGAACGGGTC
CTGGGCGGACGGCTCCTTGATGCGCGACTCCCTCCTGTCCGCGTCGGGTA
CCCTGGTCGGAGCCACGGGGCCCCTGGGCATGTCCGTCGGGGAGGACGAC
GACGGGAGGGACGCGAACACGGTCACCTTCTGCGCGGTGAATCTCAAGCC
GGACGCCACCCACGGGGCGAGGTTCGAGGTGATCAGCACGCTGGACGGCG
CGACCCTCGAGAGCGAGGACGGCGAGGGCTTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15565:1120..3654+

>mRNA_Ecto-sp13_S_contig15565.4134.1 ID=mRNA_Ecto-sp13_S_contig15565.4134.1|Name=mRNA_Ecto-sp13_S_contig15565.4134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15565:1120..3654+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGCACCGCGGTCGTCGTTCAGGCCAATGAGGCCGGCCTGACGGAGGG
GGTGCAGTGGTACCTGCCCAACGTGGCGGCCTTCGACCACGTCTTCGACC
GGAACTCCACGTACCGCGACGCGAGCCTCGCCTTCGACATGCGAGGCGCG
CTCGGCGTTCGGGCCTGCACGCCCCGCACAGGCAAGATGGCGCAGGACAC
GCTCACTTTGGCGAACGTGAACGAATCGGGGCTCCAAGGGATAACGCTGG
ACAGCTGCCCGTTTCCCAGGAACGGGTCCTGGGCGGACGGCTCCTTGATG
CGCGACTCCCTCCTGTCCGCGTCGGGTACCCTGGTCGGAGCCACGGGGCC
CCTGGGCATGTCCGTCGGGGAGGACGACGACGGGAGGGACGCGAACACGG
TCACCTTCTGCGCGGTGAATCTCAAGCCGGACGCCACCCACGGGGCGAGG
TTCGAGGTGATCAGCACGCTGGACGGCGCGACCCTCGAGAGCGAGGACGG
CGAGGGCTTCCAG
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