mRNA_Ecto-sp13_S_contig15561.4132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15561.4132.1
Unique NamemRNA_Ecto-sp13_S_contig15561.4132.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15561.4132.1 vs. uniprot
Match: D7G5M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 5.020e-49
Identity = 130/160 (81.25%), Postives = 136/160 (85.00%), Query Frame = 1 
Query:    1 GGGVIWTKGEVTILGGNFSGNDGAESGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEGRINITQGTFTNNEADFGGFLYKEGPGNASCTGASVTGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAM 480
            GGGVIWTKG VTILGGNFSGN   E+GGV       XXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE+G I+ITQGTFTNNEADFGGFLYKEGPGNASCTGAS+ GHRGV+GGA+YAVEG KLEWGCDLVNNSAL GPAM
Sbjct:   11 GGGVIWTKGNVTILGGNFSGNAVPEAGGVVLAAEESXXXXXXXLFQGNEALDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEDGHISITQGTFTNNEADFGGFLYKEGPGNASCTGASIAGHRGVNGGALYAVEGPKLEWGCDLVNNSALTGPAM 170
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BLAST of mRNA_Ecto-sp13_S_contig15561.4132.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 5.650e-38
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:  256 EEEGRINITQGTFTNNEADFGGFLYKEGPGNASCTGASVTGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAM 480
            EE G INITQGTFTNNEADFGGFLYKEGPGNASCTGASV GHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPA+
Sbjct:  511 EEGGHINITQGTFTNNEADFGGFLYKEGPGNASCTGASVVGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAI 585
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BLAST of mRNA_Ecto-sp13_S_contig15561.4132.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 7.550e-38
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:  256 EEEGRINITQGTFTNNEADFGGFLYKEGPGNASCTGASVTGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAM 480
            EE+G I+ITQGTFTNNEADFGGFLYKEGPGNASCTGASV GHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPA+
Sbjct:  161 EEDGHIDITQGTFTNNEADFGGFLYKEGPGNASCTGASVAGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAI 235
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BLAST of mRNA_Ecto-sp13_S_contig15561.4132.1 vs. uniprot
Match: A0A6H5JS62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS62_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.390e-35
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:  283 QGTFTNNEADFGGFLYKEGPGNASCTGASVTGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAM 480
            QGTFTNNEADFGGFLYKE PGNASCTGASV  HRGVDGGAVYAVEGAKLEWGC LVNNSALAGPAM
Sbjct:    2 QGTFTNNEADFGGFLYKEVPGNASCTGASVARHRGVDGGAVYAVEGAKLEWGCHLVNNSALAGPAM 67
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BLAST of mRNA_Ecto-sp13_S_contig15561.4132.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.420e-32
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:  277 ITQGTFTNNEADFGGFLYKEGPGNASCTGASVTGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAM 480
            ITQGTFTNNEADFGGFLYKEG GNA CTGASV GHRGVDGGAVYAVEGAKLEWGC LVNNSALAGPA+
Sbjct:  606 ITQGTFTNNEADFGGFLYKEGSGNAYCTGASVVGHRGVDGGAVYAVEGAKLEWGCHLVNNSALAGPAI 673
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BLAST of mRNA_Ecto-sp13_S_contig15561.4132.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.840e-14
Identity = 93/159 (58.49%), Postives = 112/159 (70.44%), Query Frame = 1 
Query:    4 GGVIWTKGEVTILGGNFSGNDGAESGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEGRINITQGTFTNNEADFGGFLYKEGPGNASCTGASVTGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAM 480
            GGV+WT+GE+++LGG+FS N+ A++GGV            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          G F +N           G GNA+C+GA+V  H G+DGGA+YA++GA LEW C +  NSAL GPA+
Sbjct:  302 GGVLWTRGEISVLGGHFS-NNSAKNGGVIQGSLNSTVVVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNFISNXXXXXXXXXXXGEGNATCSGATVLQHEGIDGGAIYAIDGANLEWACHIRENSALIGPAI 459
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BLAST of mRNA_Ecto-sp13_S_contig15561.4132.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.650e-14
Identity = 98/159 (61.64%), Postives = 113/159 (71.07%), Query Frame = 1 
Query:    4 GGVIWTKGEVTILGGNFSGNDGAESGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEGRINITQGTFTNNEADFGGFLYKEGPGNASCTGASVTGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAM 480
            GGV+WT+G +++LGG+FS N+ A++GGV          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     I IT GTF +N+ADF          NA+C         GVDGGA+YAV+GA LEW C L  NSAL GPA+
Sbjct:  523 GGVLWTRGNISVLGGHFS-NNSAKNGGVIQGSLKSSVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADIEITGGTFISNKADFXXXXXXXXXXNAACXXXXXXXXXGVDGGAIYAVDGANLEWECHLRENSALIGPAI 680
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BLAST of mRNA_Ecto-sp13_S_contig15561.4132.1 vs. uniprot
Match: D7G120_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G120_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 5.110e-5
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:  379 HRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAM 480
            H GVDG A+YA++GA LEW C+L  NSAL GPA+
Sbjct:  438 HEGVDGDAIYAIDGANLEWECNLRENSALIGPAI 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15561.4132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G5M1_ECTSI5.020e-4981.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0B0_ECTSI5.650e-3894.67Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G0A8_ECTSI7.550e-3893.33Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JS62_9PHAE2.390e-3593.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA9_9PHAE6.420e-3292.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G119_ECTSI1.840e-1458.49Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5K4A5_9PHAE8.650e-1461.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G120_ECTSI5.110e-564.71Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15561contigEcto-sp13_S_contig15561:645..2010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size483
Hectar predicted targeting categoryother localisation
Exons3
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.8458695-CDS-Ecto-sp13_S_contig15561:644..7681681462824.8458695-CDS-Ecto-sp13_S_contig15561:644..768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15561 645..768 +
1681462824.85658-CDS-Ecto-sp13_S_contig15561:1367..15191681462824.85658-CDS-Ecto-sp13_S_contig15561:1367..1519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15561 1368..1519 +
1681462824.8682358-CDS-Ecto-sp13_S_contig15561:1803..20101681462824.8682358-CDS-Ecto-sp13_S_contig15561:1803..2010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15561 1804..2010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15561.4132.1prot_Ecto-sp13_S_contig15561.4132.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15561 645..2010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15561.4132.1

>prot_Ecto-sp13_S_contig15561.4132.1 ID=prot_Ecto-sp13_S_contig15561.4132.1|Name=mRNA_Ecto-sp13_S_contig15561.4132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
GGGVIWTKGEVTILGGNFSGNDGAESGGVVLASEGSTIVIAGGLFQGNEA
LDGGVVFVGEGATVEVEGGVFDSNHAGNAGGAFAAEEEGRINITQGTFTN
NEADFGGFLYKEGPGNASCTGASVTGHRGVDGGAVYAVEGAKLEWGCDLV
NNSALAGPAM*
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mRNA from alignment at Ecto-sp13_S_contig15561:645..2010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15561.4132.1 ID=mRNA_Ecto-sp13_S_contig15561.4132.1|Name=mRNA_Ecto-sp13_S_contig15561.4132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15561:645..2010+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGCGGCGTGATCTGGACCAAGGGCGAGGTGACCATCCTCGGGGGAAA
TTTTTCGGGGAACGATGGGGCGGAATCGGGAGGAGTAGTGCTCGCTTCGG
AGGGAAGCACGATCGTAATTGCGGGTACGATAGACTCTTCCTCGTGGTAG
TGGTAGTGGTGGTGATGTTAGTGGAGGTGGTTAACGTTGCTGTCGTTGTT
GTTGTTGTTGTTGATGATGATGGTGGTGGTAGTTGTTGTTGCCCTCGTCG
TTGCCTTTGTTGTTGTTGACGGCGGCGTTGTTGTTGTTTAATATGTTTTT
TTGTTTTAATCGTAGCCCCGGGACGTCGAAAGATGTACCATTGCACTACC
GGGCGGCACCATTCATTCGCGTTGCACTGGCTCGAAAAGCAACATAACGT
ATTTTGCAAAGGGCTACAAACGATTTCTAGGTGCTTTTTTTAATAGTGCT
TGGCTTTTTGAGGAGGATTGACTTACGTCCGCTTGCGGCCCGGCGTATGT
GACTACCCGCTAGTTGGGTACCCTCTTTATTCAAAAGGGGCCTCCGATAT
TAGAGCGTTAAGGGTCTTTGTCTCACCACCCTCTTCTGTCGAAGCCGTAC
TGCCGCATGTGTGTCCCCTCTTCGCAAAGGATGTAGTTTTGTTGACTCCA
CCAGCGTGTAGATGGAGATGTTTTTTTGTAACCGTAGCGTTTCCTGCTCA
AACTCGGTCTCGGTTTGTTCAAGGTGGTCTGTTCCAGGGTAACGAGGCGT
TGGACGGAGGCGTCGTGTTCGTGGGCGAGGGGGCGACGGTGGAAGTGGAA
GGAGGCGTCTTCGACTCTAACCATGCTGGCAATGCGGGCGGCGCCTTCGC
TGCGGAGGAAGAAGGACGCATTAACGTGAGAGGTGGAGAGAGGAGAGAGA
GCAGAGACAGACAGACAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAG
ACAGACAGACAGGCAGATAGATAGAGGGCACATTGATGTGAGGTGTGAGA
GGAGAGAGAGAAGAGACAAGATAGATTGGCAGACAGGCAGGCGGGCTAAA
AGACAGACGTGCATGGAAAGAAGGGGGGCTTTGCGGGTCTCGAAACAACA
ACGAGCCCCCATCCACTATGACAACCAATACCCGGTATACACCAACACCA
ATTGTACAGATCACGCAAGGAACTTTCACGAACAACGAGGCCGACTTCGG
GGGATTTCTGTACAAGGAAGGGCCGGGGAACGCCTCCTGCACGGGTGCGA
GCGTCACGGGGCACCGCGGTGTCGACGGGGGTGCCGTGTATGCCGTCGAG
GGGGCCAAGCTGGAGTGGGGGTGCGACCTGGTGAACAACTCTGCACTTGC
GGGACCTGCCATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15561:645..2010+

>mRNA_Ecto-sp13_S_contig15561.4132.1 ID=mRNA_Ecto-sp13_S_contig15561.4132.1|Name=mRNA_Ecto-sp13_S_contig15561.4132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15561:645..2010+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGCGGCGTGATCTGGACCAAGGGCGAGGTGACCATCCTCGGGGGAAA
TTTTTCGGGGAACGATGGGGCGGAATCGGGAGGAGTAGTGCTCGCTTCGG
AGGGAAGCACGATCGTAATTGCGGGTGGTCTGTTCCAGGGTAACGAGGCG
TTGGACGGAGGCGTCGTGTTCGTGGGCGAGGGGGCGACGGTGGAAGTGGA
AGGAGGCGTCTTCGACTCTAACCATGCTGGCAATGCGGGCGGCGCCTTCG
CTGCGGAGGAAGAAGGACGCATTAACATCACGCAAGGAACTTTCACGAAC
AACGAGGCCGACTTCGGGGGATTTCTGTACAAGGAAGGGCCGGGGAACGC
CTCCTGCACGGGTGCGAGCGTCACGGGGCACCGCGGTGTCGACGGGGGTG
CCGTGTATGCCGTCGAGGGGGCCAAGCTGGAGTGGGGGTGCGACCTGGTG
AACAACTCTGCACTTGCGGGACCTGCCATGTGA
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