mRNA_Ecto-sp13_S_contig1555.4128.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1555.4128.1
Unique NamemRNA_Ecto-sp13_S_contig1555.4128.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1555.4128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1555contigEcto-sp13_S_contig1555:2867..3735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size869
Hectar predicted targeting categoryother localisation
Exons1
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.426942-CDS-Ecto-sp13_S_contig1555:2866..33971681462824.426942-CDS-Ecto-sp13_S_contig1555:2866..3397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1555 2867..3397 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.4418292-UTR-Ecto-sp13_S_contig1555:3397..37351681462824.4418292-UTR-Ecto-sp13_S_contig1555:3397..3735Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1555 3398..3735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1555.4128.1prot_Ecto-sp13_S_contig1555.4128.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1555 2867..3397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1555.4128.1

>prot_Ecto-sp13_S_contig1555.4128.1 ID=prot_Ecto-sp13_S_contig1555.4128.1|Name=mRNA_Ecto-sp13_S_contig1555.4128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MCSAGRTTRQASADAAVREAGRRGEYASQPGTLAARCPCRYTESHRPLRA
AGVGEQNLRRLPTAPKSRRRPNLDGEDHAYGPPGAPDILQYSILQICRWD
ENNEDGQLTLFRHFRGAQVEINRLEGAQTICGFLQHRMPRGDRSVWRREG
AWERHAPPPAKPSCSIASVATRFEQA*
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mRNA from alignment at Ecto-sp13_S_contig1555:2867..3735+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1555.4128.1 ID=mRNA_Ecto-sp13_S_contig1555.4128.1|Name=mRNA_Ecto-sp13_S_contig1555.4128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=869bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1555:2867..3735+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCAGTGCCGGCAGGACTACTAGGCAGGCGTCGGCTGATGCTGCGGT
TCGTGAGGCAGGCCGACGGGGCGAGTACGCGTCACAACCGGGCACATTAG
CAGCGCGCTGTCCCTGCCGTTACACGGAGAGCCATCGCCCGCTTCGGGCA
GCAGGAGTTGGGGAACAGAATCTGCGTCGCCTACCTACCGCACCGAAATC
TCGGCGCCGACCAAATCTTGACGGAGAGGATCACGCATATGGACCACCCG
GTGCGCCCGACATACTCCAATACAGCATACTACAAATATGTAGATGGGAC
GAAAACAACGAGGACGGCCAACTGACACTGTTTAGGCATTTCCGCGGAGC
CCAAGTAGAAATAAATAGGCTGGAGGGTGCCCAAACGATCTGTGGGTTCT
TACAACACAGGATGCCTCGAGGCGATCGAAGCGTTTGGCGGCGGGAAGGG
GCATGGGAAAGGCATGCCCCCCCCCCAGCGAAACCATCGTGCTCTATTGC
CTCTGTTGCTACACGATTCGAACAAGCCTGACGACAATCCACGCCGCGAC
TCACCCCATCGACAAGACTTTCTGGGTGATAGGATGGCAACAACACCGCG
AATGAACAGGAGCCAAGGCTGGCCACCGACGATCGGCAGCAGACACAGGT
CCCCCACCCAGGCCCACGCCAAAACACAAAGGCTGCAAACTAATAAAGAA
GGCAAGACCGGGCTGTAGAGGGAATATGGGAATTCTGCAAAAGAACAGTT
GACAAGAAACCGTGGTACACTACACATGTAAACTATCGAGAGGTACACCA
ATCGCGCCGCACGGGTATTTGCAGGAAAATACGCGACGGGTGCCCCCCGC
ACCTGCATATTATTTAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1555:2867..3735+

>mRNA_Ecto-sp13_S_contig1555.4128.1 ID=mRNA_Ecto-sp13_S_contig1555.4128.1|Name=mRNA_Ecto-sp13_S_contig1555.4128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1555:2867..3735+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCAGTGCCGGCAGGACTACTAGGCAGGCGTCGGCTGATGCTGCGGT
TCGTGAGGCAGGCCGACGGGGCGAGTACGCGTCACAACCGGGCACATTAG
CAGCGCGCTGTCCCTGCCGTTACACGGAGAGCCATCGCCCGCTTCGGGCA
GCAGGAGTTGGGGAACAGAATCTGCGTCGCCTACCTACCGCACCGAAATC
TCGGCGCCGACCAAATCTTGACGGAGAGGATCACGCATATGGACCACCCG
GTGCGCCCGACATACTCCAATACAGCATACTACAAATATGTAGATGGGAC
GAAAACAACGAGGACGGCCAACTGACACTGTTTAGGCATTTCCGCGGAGC
CCAAGTAGAAATAAATAGGCTGGAGGGTGCCCAAACGATCTGTGGGTTCT
TACAACACAGGATGCCTCGAGGCGATCGAAGCGTTTGGCGGCGGGAAGGG
GCATGGGAAAGGCATGCCCCCCCCCCAGCGAAACCATCGTGCTCTATTGC
CTCTGTTGCTACACGATTCGAACAAGCCTGA
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