mRNA_Ecto-sp13_S_contig15540.4123.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15540.4123.1
Unique NamemRNA_Ecto-sp13_S_contig15540.4123.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15540.4123.1 vs. uniprot
Match: D7FRN2_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN2_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 8.620e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 3 
Query:   42 LEDDSEQARKVQAKAIEARRHRVCKAALDNMAGEAVGALFATMADRAMGIDVDGKGTGAGSTLDSQHKDS 251
            LEDDSEQARKVQAKAIEARRHRVCKAALDNMAGEAVG+LFATMADRAMGIDVDGKGTGAGS L+SQH+DS
Sbjct: 1723 LEDDSEQARKVQAKAIEARRHRVCKAALDNMAGEAVGSLFATMADRAMGIDVDGKGTGAGSALESQHEDS 1792
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15540.4123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRN2_ECTSI8.620e-3194.29RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15540contigEcto-sp13_S_contig15540:822..1360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size258
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.180945-CDS-Ecto-sp13_S_contig15540:821..8621681462824.180945-CDS-Ecto-sp13_S_contig15540:821..862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15540 822..862 +
1681462824.1904614-CDS-Ecto-sp13_S_contig15540:1143..13601681462824.1904614-CDS-Ecto-sp13_S_contig15540:1143..1360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15540 1144..1360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15540.4123.1prot_Ecto-sp13_S_contig15540.4123.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15540 822..1360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15540.4123.1

>prot_Ecto-sp13_S_contig15540.4123.1 ID=prot_Ecto-sp13_S_contig15540.4123.1|Name=mRNA_Ecto-sp13_S_contig15540.4123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MFEGKERRKELIRDWRTTASRRGRCRPRPSRPDGTGCARPPSTTWPAKPS
ARSSPPWPTELWASTSMARAPVPVLLSTHNIRTVTG
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mRNA from alignment at Ecto-sp13_S_contig15540:822..1360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15540.4123.1 ID=mRNA_Ecto-sp13_S_contig15540.4123.1|Name=mRNA_Ecto-sp13_S_contig15540.4123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=539bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15540:822..1360+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGAAGGAAAGGAGCGCCGGAAGGAGCTCATTCGGGAGTTACGTAT
CGCCAAGCAGGTAGAACTCTGCATAGGTTTGGCTGTGTTGGTGTTTCCTT
GTATCTCTGCACCGCTTTCGTGCCTTCAGCTGGTATCGTGGAACCCATCG
CCGTGTCCCAGTCTGGTTCTCTCGTTCTCTGTCGAGCTTGCTACCAAATG
GACGAACCCCGCACTTACACCCCTTCCTACAGTGGTACAGTCTTTCGGAG
ATTCGCCCCTTCGCACCGGCTCACTCACTCTATTTCTTCTCCCCCCCCTC
CCCCCCCCCCCCGCGCCCGCAGTTGGAGGACGACAGCGAGCAGGCGAGGA
AGGTGCAGGCCAAGGCCATCGAGGCCAGACGGCACAGGGTGTGCAAGGCC
GCCCTCGACAACATGGCCGGCGAAGCCGTCGGCGCGCTCTTCGCCACCAT
GGCCGACAGAGCTATGGGCATCGACGTCGATGGCAAGGGCACCGGTGCCG
GTTCTACTCTCGACTCACAACATAAGGACAGTCACGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15540:822..1360+

>mRNA_Ecto-sp13_S_contig15540.4123.1 ID=mRNA_Ecto-sp13_S_contig15540.4123.1|Name=mRNA_Ecto-sp13_S_contig15540.4123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15540:822..1360+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGAAGGAAAGGAGCGCCGGAAGGAGCTCATTCGGGATTGGAGGAC
GACAGCGAGCAGGCGAGGAAGGTGCAGGCCAAGGCCATCGAGGCCAGACG
GCACAGGGTGTGCAAGGCCGCCCTCGACAACATGGCCGGCGAAGCCGTCG
GCGCGCTCTTCGCCACCATGGCCGACAGAGCTATGGGCATCGACGTCGAT
GGCAAGGGCACCGGTGCCGGTTCTACTCTCGACTCACAACATAAGGACAG
TCACGGGG
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