mRNA_Ecto-sp13_S_contig15537.4121.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15537.4121.1
Unique NamemRNA_Ecto-sp13_S_contig15537.4121.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15537.4121.1 vs. uniprot
Match: D7G5K8_ECTSI (Scaper protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K8_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 1.760e-119
Identity = 304/346 (87.86%), Postives = 312/346 (90.17%), Query Frame = 1 
Query:    1 AVETTTERSNADAIARVAAVGSGNDGCADSRNKGEKSDSPPQREEGAAQDGERNNIPPLGRDQYHHSADNNWEVVVAGVREHYDEGTGRKQGGDDDEEGEESDVDXXXXXXXXXDPDSAYVDAMEKIWAEAEAXXXXXXXXXXXAWARLPTDVTCCPSEYVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKTGLVSLPFAPGAESGSDVPLRRQSSGGICSRRTVMGAHAGVRQGAVGGSDDDADELLDLEIEIPVPGEAEEERVGAAVGDIERFAGNGKEEA-LRQRVNTLASEDADVENASLHSWYQAGDRPDLDSEE 1035
            AVETTTE SNADA+A VAAVGS NDG ADSRNKGEKSDSPP  E+GA QDGE NNIPPLGRDQ HHSADN  EVVVAGVRE  DEGTGRKQ GD           XXXXXXXXX PDSAYVDAMEKIWAEAEAXXXXXXXXXXXAWARLPTDVTCCPSE  GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKTG+VSLPFAPGAE+GSDVPLRRQSSGGIC RRT MGA+AGVRQGAVGGSDDD DELLDLEIEIPVPGEAEEERVGAAVGDIERFAG+G+EE  LRQRVNTLASEDADVENASLHSWYQA DRPDLDSE+
Sbjct:  737 AVETTTEGSNADAVASVAAVGSRNDGGADSRNKGEKSDSPPHCEKGATQDGETNNIPPLGRDQCHHSADNYREVVVAGVRERDDEGTGRKQEGDXXXXXXXXXXXXXXXXXXXXXPDSAYVDAMEKIWAEAEAXXXXXXXXXXXAWARLPTDVTCCPSESEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKTGVVSLPFAPGAENGSDVPLRRQSSGGICGRRTAMGANAGVRQGAVGGSDDDVDELLDLEIEIPVPGEAEEERVGAAVGDIERFAGDGEEEGELRQRVNTLASEDADVENASLHSWYQASDRPDLDSED 1082
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BLAST of mRNA_Ecto-sp13_S_contig15537.4121.1 vs. uniprot
Match: A0A6H5JBR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR7_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 1.350e-106
Identity = 278/322 (86.34%), Postives = 288/322 (89.44%), Query Frame = 1 
Query:    1 AVETTTERSNADAIARVAAVGSGNDGCADSRNKGEKSDSPPQREEGAAQDGERNNIPPLGRDQYHHSADNNWEVVVAGVREHYDEGTGRKQGGDDDEEGEESDVDXXXXXXXXXDPDSAYVDAMEKIWAEAEAXXXXXXXXXXXAWARLPTDVTCCPSEYVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKTGLVSLPFAPGAESGSDVPLRRQSSGGICSRRTVMGAHAGVRQGAVGGSDDDADELLDLEIEIPVPGEAEEERVGAAVGDIERFAGNGKEEALRQRVNTLASEDA 966
            AVETTTE SNA+AIA VA VGSGNDGCADSRNKGEKSDSPP+RE GAAQDGE NNIPPLGRDQ H SADNN EVVVAGV E  DEGTGRKQ GD+          XXXXXXXXXDPD AYVDAMEKIWAEAEAXXXXXXXXXXXAWARLPTDVTCCPSEY GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   TG+V LP A GAESGSDVPLR QSSGGICSRRTVMGA+AGVRQGAVGGSDDD DELLDLEIE+PVPGEAEEE VGAAVGDIERFAGNG+EEALRQRV TLAS+++
Sbjct:  590 AVETTTEGSNAEAIASVATVGSGNDGCADSRNKGEKSDSPPRRETGAAQDGEINNIPPLGRDQCHPSADNNREVVVAGVGERDDEGTGRKQEGDEXXXXXXXXXXXXXXXXXXXDPDFAYVDAMEKIWAEAEAXXXXXXXXXXXAWARLPTDVTCCPSEYEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGVVLLPLASGAESGSDVPLRSQSSGGICSRRTVMGANAGVRQGAVGGSDDDVDELLDLEIEVPVPGEAEEELVGAAVGDIERFAGNGEEEALRQRVKTLASKES 911
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15537.4121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5K8_ECTSI1.760e-11987.86Scaper protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JBR7_9PHAE1.350e-10686.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15537contigEcto-sp13_S_contig15537:697..3444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score399.1
Seed ortholog evalue2.7e-108
Seed eggNOG ortholog2880.D7G5K8
Preferred nameSCAPER
Model size1307
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0015630,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
Exons4
EggNOG OGsKOG4722@1,KOG4722@2759
Ec32 ortholog descriptionScaper protein
Ec32 orthologEc-22_001040.1
Cds size1305
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462824.036961-CDS-Ecto-sp13_S_contig15537:696..11161681462824.036961-CDS-Ecto-sp13_S_contig15537:696..1116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15537 697..1116 +
1681462824.0575895-CDS-Ecto-sp13_S_contig15537:1573..21141681462824.0575895-CDS-Ecto-sp13_S_contig15537:1573..2114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15537 1574..2114 +
1681462824.0688026-CDS-Ecto-sp13_S_contig15537:2652..27621681462824.0688026-CDS-Ecto-sp13_S_contig15537:2652..2762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15537 2653..2762 +
1681462824.079537-CDS-Ecto-sp13_S_contig15537:3210..34441681462824.079537-CDS-Ecto-sp13_S_contig15537:3210..3444Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15537 3211..3444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15537.4121.1prot_Ecto-sp13_S_contig15537.4121.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15537 697..3444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15537.4121.1

>prot_Ecto-sp13_S_contig15537.4121.1 ID=prot_Ecto-sp13_S_contig15537.4121.1|Name=mRNA_Ecto-sp13_S_contig15537.4121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=435bp
AVETTTERSNADAIARVAAVGSGNDGCADSRNKGEKSDSPPQREEGAAQD
GERNNIPPLGRDQYHHSADNNWEVVVAGVREHYDEGTGRKQGGDDDEEGE
ESDVDGEEGEEEDEDPDSAYVDAMEKIWAEAEAWVDAEAQAEEEAWARLP
TDVTCCPSEYVGGGGSDIEESTPAAAATKSTADTAGAARSSLDHRRKPPG
RDEDDDDDYAGGAAAEKTGLVSLPFAPGAESGSDVPLRRQSSGGICSRRT
VMGAHAGVRQGAVGGSDDDADELLDLEIEIPVPGEAEEERVGAAVGDIER
FAGNGKEEALRQRVNTLASEDADVENASLHSWYQAGDRPDLDSEEDNDKE
EEEEEETEEAQDEHTSKTTESAAAAAAAEHSAGSKHGDTGNGSTDAHKQA
ERGKGKERGGCHAPSDSPRFPRSPANSPVAEAGHH
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mRNA from alignment at Ecto-sp13_S_contig15537:697..3444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15537.4121.1 ID=mRNA_Ecto-sp13_S_contig15537.4121.1|Name=mRNA_Ecto-sp13_S_contig15537.4121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2748bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15537:697..3444+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGGAGACAACCACCGAACGGAGCAATGCGGACGCGATAGCTAGGGT
TGCCGCTGTAGGCAGCGGGAACGACGGCTGCGCTGACAGCCGCAACAAGG
GCGAGAAGAGCGATAGCCCGCCACAACGCGAGGAGGGAGCGGCGCAGGAT
GGCGAAAGAAACAATATCCCACCGCTGGGGCGGGATCAATACCACCACAG
CGCCGACAACAATTGGGAGGTCGTCGTGGCTGGGGTCAGAGAACATTATG
ACGAGGGCACCGGCCGGAAACAAGGAGGAGATGACGACGAGGAGGGAGAG
GAATCGGATGTTGACGGAGAGGAAGGGGAGGAGGAAGATGAGGACCCAGA
CTCTGCATACGTCGACGCCATGGAGAAAATCTGGGCGGAGGCGGAGGCCT
GGGTGGACGCGGAGGCTCAGGTTAGTCTGCGCCCGCCGTGCGCCAGAATT
GTGTCGAAGCATCGATAGGGAGACAGGCCGCAGGAAGGGGAGGGGAGTCC
TTTGCGCTAGCAGTGGGACGTCATGACTCTTTCAGACGAAACGGAACTGG
GCGTCTCTCATCACGACGAGGACGAACACCCCTGCAAATTCCCAGGAGAA
GAAACATTGTAAATGCACCCTGTCGTTGTTTACTGTACGTATACAGATCT
CGATGTTCTTTCAGGGAGAGAACAACATCAAGCTGCTACAGACATCATCG
TCCATGCCTATTTCTTAGAGCTCAGCGTACATGTGTTTGTGAGCTGGCAC
CTCGATTGTTTACCACGCCCCCTCCCCCCCTTCCCGAGACCCCCGTACTC
CGCAACCTAACCCAACCCGTGGTCGGTGGCACAACGACGGTGCCACCACC
GGACGCGATCCTGCGCGGCGCTTGCAGGCTGAAGAGGAGGCATGGGCCCG
GCTCCCAACCGACGTGACCTGCTGTCCCTCGGAGTACGTGGGGGGGGGGG
GTTCCGACATCGAAGAGTCAACGCCGGCAGCGGCAGCAACGAAGTCAACA
GCAGACACGGCGGGGGCGGCACGATCGTCATTAGATCACCGCCGGAAGCC
ACCCGGCCGTGACGAAGACGACGACGACGACTACGCTGGTGGTGCAGCGG
CGGAGAAGACGGGATTGGTGTCGCTACCTTTCGCGCCTGGCGCCGAGAGC
GGTTCGGATGTACCGCTAAGGCGCCAAAGCAGCGGCGGTATCTGCAGCCG
TCGCACCGTAATGGGTGCTCACGCCGGCGTTCGGCAGGGCGCGGTTGGCG
GTAGCGACGATGACGCGGACGAGTTGCTCGACCTGGAGATCGAGATTCCG
GTACCCGGGGAGGCGGAGGAAGAGCGGGTCGGGGCAGCAGTCGGAGACAT
TGAGAGATTTGCAGGGAATGGCAAGGAGGAGGCGTTGCGTCAACGGGTGA
ACACGTTGGCGTCGGAAGGTGAGAGCTGTACTTTTTCGGTTCTCGTGTCC
CGTGCTCAAGTAGGTTCCACCACAACGGATTGTGCTTGAGGACAGATCAC
AGAGAGCGCACCTCAGGACGGCAATCACTCTTAGGAGAAGTGCACGCACG
TTTTTTCATGGCGATTCTCATCACACGTCCACTTGCGACCAAAGATGCAG
CCACGACGTGTGGTAGAGGACACCTTGCAAGCAAGGAACAACCTTACCAG
AACCTTCAACAGGCCTTGTCAAGGAAGCAAGAGGGTGCAGCGAGGGTAGG
AGGCACTCTCCCTTCCAGGGCGGGAAACGCCTTCGGACTGGACCGAAATC
AACCCGGGTGTCTCGCAATACGTCCTGTATTTGTGTTCTGTTCACGTTGA
TGTTGATTAGTCTCCAGCTTCAGCATCAAGGTCAGGCTCGACTGAATCAT
GCACCGGTTCACCCCCCACCCACCCTACCCCCTCTCCTTCCCACAACCCC
TTTTCGGCCTCCTCGTTTGTGTGGTCTCCTTCTTGCCGCTGGCTGCTTTG
CTGCAGACGCGGACGTCGAGAACGCCTCCCTGCATTCCTGGTATCAGGCT
GGTGACCGACCTGATCTAGACTCTGAAGAGGACAACGACAAGGAGGAGGA
GGAAGAGGAAGAGACGGTGAGCTTGGGCCTCCCAATTGCTTGAGTTTTTC
GTGTGGTGGAGCATTCCGCCCAGTTGGGCCTTGCGTATAGGCTTCCGGGA
GGGAGAGCTTTGTTCATTTCACGCGATGGGGGCGACGTGTTGCTCAGTGA
AGAACCCAAGCAAGCACTGTGGTTGACCATGGTTTGTTTTTTGTGGCGTC
AATGGTGTCTCCTTCTTGACATACGCCTATAAAACAATACAGCCCAGGAC
ACAAAAGTATCGCGTGTGTCCTGTGAAGTTAATCCTTCGTCGTTTGTGCT
TATTCAAGCCGGAGGTATGTACACAGGCTTGACCGCGTCGTTTGCTGTTG
GTTACTCCGGCCAAATATCGTCAATATGGTTGTAGCATCAACAGCAGCAG
GTATCTGGAGAACTCGAAAAAGAGTACCTTGATAACAACCGACCAAGTGT
TGTTTGTGTCGCAGGAGGAGGCTCAGGATGAACACACGTCGAAAACAACC
GAATCAGCTGCAGCAGCAGCAGCAGCGGAGCATTCCGCCGGCAGCAAGCA
TGGCGATACCGGCAATGGTAGCACGGATGCACACAAGCAAGCAGAAAGAG
GGAAGGGAAAAGAACGGGGAGGTTGTCATGCTCCGTCCGACTCCCCGAGA
TTCCCAAGATCACCAGCGAACTCCCCAGTCGCGGAGGCTGGCCATCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15537:697..3444+

>mRNA_Ecto-sp13_S_contig15537.4121.1 ID=mRNA_Ecto-sp13_S_contig15537.4121.1|Name=mRNA_Ecto-sp13_S_contig15537.4121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1305bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15537:697..3444+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGGAGACAACCACCGAACGGAGCAATGCGGACGCGATAGCTAGGGT
TGCCGCTGTAGGCAGCGGGAACGACGGCTGCGCTGACAGCCGCAACAAGG
GCGAGAAGAGCGATAGCCCGCCACAACGCGAGGAGGGAGCGGCGCAGGAT
GGCGAAAGAAACAATATCCCACCGCTGGGGCGGGATCAATACCACCACAG
CGCCGACAACAATTGGGAGGTCGTCGTGGCTGGGGTCAGAGAACATTATG
ACGAGGGCACCGGCCGGAAACAAGGAGGAGATGACGACGAGGAGGGAGAG
GAATCGGATGTTGACGGAGAGGAAGGGGAGGAGGAAGATGAGGACCCAGA
CTCTGCATACGTCGACGCCATGGAGAAAATCTGGGCGGAGGCGGAGGCCT
GGGTGGACGCGGAGGCTCAGGCTGAAGAGGAGGCATGGGCCCGGCTCCCA
ACCGACGTGACCTGCTGTCCCTCGGAGTACGTGGGGGGGGGGGGTTCCGA
CATCGAAGAGTCAACGCCGGCAGCGGCAGCAACGAAGTCAACAGCAGACA
CGGCGGGGGCGGCACGATCGTCATTAGATCACCGCCGGAAGCCACCCGGC
CGTGACGAAGACGACGACGACGACTACGCTGGTGGTGCAGCGGCGGAGAA
GACGGGATTGGTGTCGCTACCTTTCGCGCCTGGCGCCGAGAGCGGTTCGG
ATGTACCGCTAAGGCGCCAAAGCAGCGGCGGTATCTGCAGCCGTCGCACC
GTAATGGGTGCTCACGCCGGCGTTCGGCAGGGCGCGGTTGGCGGTAGCGA
CGATGACGCGGACGAGTTGCTCGACCTGGAGATCGAGATTCCGGTACCCG
GGGAGGCGGAGGAAGAGCGGGTCGGGGCAGCAGTCGGAGACATTGAGAGA
TTTGCAGGGAATGGCAAGGAGGAGGCGTTGCGTCAACGGGTGAACACGTT
GGCGTCGGAAGACGCGGACGTCGAGAACGCCTCCCTGCATTCCTGGTATC
AGGCTGGTGACCGACCTGATCTAGACTCTGAAGAGGACAACGACAAGGAG
GAGGAGGAAGAGGAAGAGACGGAGGAGGCTCAGGATGAACACACGTCGAA
AACAACCGAATCAGCTGCAGCAGCAGCAGCAGCGGAGCATTCCGCCGGCA
GCAAGCATGGCGATACCGGCAATGGTAGCACGGATGCACACAAGCAAGCA
GAAAGAGGGAAGGGAAAAGAACGGGGAGGTTGTCATGCTCCGTCCGACTC
CCCGAGATTCCCAAGATCACCAGCGAACTCCCCAGTCGCGGAGGCTGGCC
ATCAT
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