mRNA_Ecto-sp13_S_contig15534.4120.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15534.4120.1
Unique NamemRNA_Ecto-sp13_S_contig15534.4120.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: A0A6H5L2G1_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G1_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 6.340e-70
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQVRMV 348
            QAKIQKMIEQEAID NYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQ   V
Sbjct:  167 QAKIQKMIEQEAIDHNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQTSDV 282
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: D7FZE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE4_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 4.410e-69
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQVRMV 348
            QAKIQKMI+QEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQ   V
Sbjct:  167 QAKIQKMIDQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQTSDV 282
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: A0A0A1SYP8_9HYPO (DNA damage-inducible protein 1 n=1 Tax=Torrubiella hemipterigena TaxID=1531966 RepID=A0A0A1SYP8_9HYPO)

HSP 1 Score: 154 bits (390), Expect = 1.380e-42
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQ 336
            Q +I++MI QE + +N   AME  PEVF RV MLY++ E+NG +VKAFVDSGAQ+TIMS ACAE CG+MRLVDTRF G ARGVGT KI+GR+H AQIKIG  H PCSFT+++
Sbjct:  226 QQRIEEMIRQERVMENLQNAMEHNPEVFGRVHMLYVNVEVNGHKVKAFVDSGAQATIMSPACAENCGVMRLVDTRFAGVARGVGTAKIIGRVHSAQIKIGTQHLPCSFTVME 337
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: G3JEF4_CORMM (DNA damage-inducible protein 1 n=2 Tax=Cordyceps militaris TaxID=73501 RepID=G3JEF4_CORMM)

HSP 1 Score: 153 bits (386), Expect = 1.190e-41
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQ 336
            Q KI++MI QE + +N   AME  PEVF RV MLY+D E+NG +VKAFVDSGAQ+TIMS +CAE CG+MRL+DTRF G ARGVGT  I+GR+H AQIKIG  H PCSFT+++
Sbjct:  262 QRKIEEMIRQERVMENLQNAMEHNPEVFGRVHMLYVDVEVNGHKVKAFVDSGAQATIMSPSCAEACGIMRLIDTRFAGVARGVGTANIIGRVHSAQIKIGAMHLPCSFTVME 373
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: A0A8H6NM56_9PEZI (DNA damage-inducible protein 1 n=4 Tax=Colletotrichum TaxID=5455 RepID=A0A8H6NM56_9PEZI)

HSP 1 Score: 151 bits (381), Expect = 1.270e-41
Identity = 74/116 (63.79%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQVRMV 348
            QAKI++MI QE + +N   AME  PEVF RV MLY+D E+NG RVKA VDSGAQ+TIMS ACAE CG+MRLVD RF G ARGVGT  I+GR+H AQIK+G    PCSFT+++ + V
Sbjct:  182 QAKIEEMIRQERVMENLQNAMEHNPEVFGRVHMLYVDVEVNGHRVKALVDSGAQATIMSPACAEACGIMRLVDKRFAGVARGVGTANIIGRVHSAQIKVGSLFLPCSFTVMEGKQV 297
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: A0A168KBZ3_CORDF (DNA damage-inducible protein 1 n=2 Tax=Cordyceps confragosa TaxID=2714763 RepID=A0A168KBZ3_CORDF)

HSP 1 Score: 151 bits (382), Expect = 1.290e-41
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQ 336
            Q KI++MI QE + +N   AME  PEVF RV MLY++ E+NG +VKAFVDSGAQ+TIMS +CAE CG+MRLVDTRF G ARGVGT  I+GR+H AQIKIG  H PCSFT+++
Sbjct:  181 QRKIEEMIRQERVMENLQNAMEHNPEVFGRVHMLYVNVEVNGHKVKAFVDSGAQATIMSPSCAEACGIMRLVDTRFAGVARGVGTANIIGRVHSAQIKIGAMHLPCSFTVME 292
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: K3W291_FUSPC (DNA damage-inducible protein 1 n=19 Tax=Fusarium TaxID=5506 RepID=K3W291_FUSPC)

HSP 1 Score: 150 bits (379), Expect = 1.840e-41
Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQVRMV 348
            Q KI++MI QE + +N   AME  PEVF RV MLY+D E+NG  VKAFVDSGAQ+TIMS +CAE CG+MRLVDTRF G ARGVGT  I+GR+H AQIKIG+   PCSFT+++ + V
Sbjct:  149 QRKIEEMIRQERVMENLQNAMEHNPEVFGRVHMLYVDVEVNGHPVKAFVDSGAQATIMSPSCAEACGIMRLVDTRFAGVARGVGTANIIGRVHSAQIKIGNLFLPCSFTVMEGKSV 264
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: A0A2N6NEZ4_BEABA (DNA damage-inducible protein 1 n=4 Tax=Beauveria TaxID=5581 RepID=A0A2N6NEZ4_BEABA)

HSP 1 Score: 151 bits (382), Expect = 1.880e-41
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQ 336
            Q KI++MI QE + +N   AME  PEVF RV MLY++ E+NG +VKAFVDSGAQ+TIMS +CAE CG+MRLVDTRF G ARGVGT  I+GR+H AQIKIG  H PCSFT+++
Sbjct:  207 QRKIEEMIRQERVMENLQNAMEHNPEVFGRVHMLYVNVEVNGHKVKAFVDSGAQATIMSPSCAEACGIMRLVDTRFAGVARGVGTANIIGRVHSAQIKIGAMHLPCSFTVME 318
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: A0A4U6XFP1_9PEZI (DNA damage-inducible protein 1 n=11 Tax=Colletotrichum TaxID=5455 RepID=A0A4U6XFP1_9PEZI)

HSP 1 Score: 150 bits (379), Expect = 2.210e-41
Identity = 73/116 (62.93%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQVRMV 348
            QAKI++MI QE + +N   AME  PEVF RV MLY+D E+NG RVKA VDSGAQ+TIMS +CAE CG+MRLVD RF G ARGVGT  I+GR+H AQIK+G    PCSFT+++ + V
Sbjct:  173 QAKIEEMIRQERVMENLQNAMEHNPEVFGRVHMLYVDVEVNGHRVKALVDSGAQATIMSPSCAEACGIMRLVDKRFAGVARGVGTANIIGRVHSAQIKVGSMFLPCSFTVMEGKQV 288
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BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Match: A0A0P7BEN5_9HYPO (DNA damage-inducible protein 1 n=1 Tax=Neonectria ditissima TaxID=78410 RepID=A0A0P7BEN5_9HYPO)

HSP 1 Score: 150 bits (378), Expect = 2.220e-41
Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:    1 QAKIQKMIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQVRMV 348
            Q KI++MI QE + +N   AME  PEVF RV MLY+D E+NG +VKA VDSGAQ+TIMS ACAE CG+MRLVDTRF G ARGVGT  I+GR+H AQIKIG+   PCSFT+++ + V
Sbjct:  150 QRKIEEMIRQERVMENLQNAMEHNPEVFGRVHMLYVDVEVNGHKVKALVDSGAQATIMSPACAEVCGIMRLVDTRFAGVARGVGTATIIGRVHSAQIKIGNLFLPCSFTVMEGKSV 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15534.4120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2G1_9PHAE6.340e-7096.55Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FZE4_ECTSI4.410e-6996.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0A1SYP8_9HYPO1.380e-4266.07DNA damage-inducible protein 1 n=1 Tax=Torrubiella... [more]
G3JEF4_CORMM1.190e-4165.18DNA damage-inducible protein 1 n=2 Tax=Cordyceps m... [more]
A0A8H6NM56_9PEZI1.270e-4163.79DNA damage-inducible protein 1 n=4 Tax=Colletotric... [more]
A0A168KBZ3_CORDF1.290e-4165.18DNA damage-inducible protein 1 n=2 Tax=Cordyceps c... [more]
K3W291_FUSPC1.840e-4163.79DNA damage-inducible protein 1 n=19 Tax=Fusarium T... [more]
A0A2N6NEZ4_BEABA1.880e-4165.18DNA damage-inducible protein 1 n=4 Tax=Beauveria T... [more]
A0A4U6XFP1_9PEZI2.210e-4162.93DNA damage-inducible protein 1 n=11 Tax=Colletotri... [more]
A0A0P7BEN5_9HYPO2.220e-4163.79DNA damage-inducible protein 1 n=1 Tax=Neonectria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15534contigEcto-sp13_S_contig15534:2086..3634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score217.2
Seed ortholog evalue3.8e-54
Seed eggNOG ortholog2880.D7FZE4
Model size354
KEGG koko:K09537,ko:K11885
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG0012@1,KOG0012@2759
Cds size336
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.9773586-UTR-Ecto-sp13_S_contig15534:2085..21031681462823.9773586-UTR-Ecto-sp13_S_contig15534:2085..2103Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15534 2086..2103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.990386-CDS-Ecto-sp13_S_contig15534:2103..22021681462823.990386-CDS-Ecto-sp13_S_contig15534:2103..2202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15534 2104..2202 +
1681462824.0011628-CDS-Ecto-sp13_S_contig15534:2915..30421681462824.0011628-CDS-Ecto-sp13_S_contig15534:2915..3042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15534 2916..3042 +
1681462824.0114706-CDS-Ecto-sp13_S_contig15534:3524..36341681462824.0114706-CDS-Ecto-sp13_S_contig15534:3524..3634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15534 3525..3634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15534.4120.1prot_Ecto-sp13_S_contig15534.4120.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15534 2104..3634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15534.4120.1

>prot_Ecto-sp13_S_contig15534.4120.1 ID=prot_Ecto-sp13_S_contig15534.4120.1|Name=mRNA_Ecto-sp13_S_contig15534.4120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MIEQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQST
IMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPC
SFTILQVRMVG*
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mRNA from alignment at Ecto-sp13_S_contig15534:2086..3634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15534.4120.1 ID=mRNA_Ecto-sp13_S_contig15534.4120.1|Name=mRNA_Ecto-sp13_S_contig15534.4120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15534:2086..3634+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGCAAAGATCCAAAAGATGATCGAACAAGAGGCGATCGACCAGAACTA
TCACATGGCTATGGAGGAGGCCCCTGAGGTCTTCGCACGCGTCAGCATGC
TCTACATCGACACCGAGGTAGATAATGTAGTGACCAGGCTTGTGCGTCCG
CGTGCACGCATGACAGAGTAAGGGACAACTAGCATTTTTCCCTTTTGTCT
TCTTTTTTCGTATGTAGTGATGACGTCCCCCACATCCTGAGCGTTATTTT
TTTTGGCCATCTCTTGGTGCGAGCCTGGACGGTTTATGATACGCGTGATG
ATGTCGATATCTGTTGCTGTGGCATTGTCCCTTCCCTGTGATGTTTGGAA
GCGACGTGAGGATAACGCAAAGGTTACACAAGGACGGAAGCGAGAAAGTC
CCCCCCCCCCGCCGGAGATAAAAAACGTGTCCGTATAAATTTTGCGTGTG
GTGATTGCTTGCTCGTCTCGCTTGTTTGTGAGTGCTTGCTTCCGCCTCTT
TCCCGTCGTTGTGCGCTTCTTGGAACGATTACTGCTGTTGCATGAGCCGC
GCCATGTATCCGACTCGCAAGTGTGTGACCAGACATCTCGGTCGGTCTTG
ACTAACAAGCACGCATTTGCACGCATGCCTGTGTGTTTTTGTGCACGTGT
GTGGTTTATTTCGCCATCATTATTATGTAAATTCATTCGCTCTGACCGGT
GTGCCTGCGAGAATGTGTGTGTGTGTGTTTCAGTTATCGTTATTATGAGC
ATCAACTTGTCTACCCGGCTGATCATTGTGCGTGTACACGTGGTTGTGTT
TTTGTTTGCACCCGCGTCGGCGGTCCCTAGATCAACGGCGTCCGGGTGAA
GGCGTTCGTCGACAGCGGCGCCCAGAGCACCATCATGTCGGCGGCCTGCG
CTGAGAAGTGCGGGCTGATGCGGCTGGTCGACACCCGCTTTCACGGAGAA
GCTCGAGGTATGTTATTTAGATAGGTAGCCTGCTATAGGTTTACACGGTC
TAAATGCATTTGTGGATGCGCCTGTGTGACAAAATGTGTTGGTGTTTGCG
TGTGCCCCTGGCACCTGTGTACGCCTACCACATGAATTGTGTACGGGTGT
TTGGGGCGACCTTTGAGAACGGGGCATCTTTTCCGAAACGTCCGTCGAGG
AGGCACGCTTCCTTCGTTTCACAATGTCGTCGACCAATAAATAGAGGGCA
TGTTCCGACGGGAGGAAAGGGGGTGCTAGCATTTAGTACCCTACGTCCAT
TGGAGTTTTTTTTTCTTCCATCTCGTGAGGAGCAAGGCCCACACGATTGT
ACCTTCCTAAGCGCGCTCGAACACCGCTCTTATGAGTTTCTTTTGTTATG
GCGGTCGAGTGTTTTTTTTTTGTTGCCCAGTCCGACATTCTTTCTCCCTT
TGCTGCTCACTGCGTGCAATTACACTGCGGCCGACTCAGGGGTGGGGACG
GGGAAGATCCTGGGAAGAATACACATGGCGCAGATCAAGATCGGGGATCA
TCACTTCCCGTGCAGCTTCACCATCCTCCAGGTGAGGATGGTCGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15534:2086..3634+

>mRNA_Ecto-sp13_S_contig15534.4120.1 ID=mRNA_Ecto-sp13_S_contig15534.4120.1|Name=mRNA_Ecto-sp13_S_contig15534.4120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15534:2086..3634+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAACAAGAGGCGATCGACCAGAACTATCACATGGCTATGGAGGA
GGCCCCTGAGGTCTTCGCACGCGTCAGCATGCTCTACATCGACACCGAGA
TCAACGGCGTCCGGGTGAAGGCGTTCGTCGACAGCGGCGCCCAGAGCACC
ATCATGTCGGCGGCCTGCGCTGAGAAGTGCGGGCTGATGCGGCTGGTCGA
CACCCGCTTTCACGGAGAAGCTCGAGGGGTGGGGACGGGGAAGATCCTGG
GAAGAATACACATGGCGCAGATCAAGATCGGGGATCATCACTTCCCGTGC
AGCTTCACCATCCTCCAGGTGAGGATGGTCGGGTAG
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