mRNA_Ecto-sp13_S_contig15533.4119.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: D8LC82_ECTSI (Haloacid dehalogenase (HAD) superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC82_ECTSI) HSP 1 Score: 426 bits (1096), Expect = 2.730e-149 Identity = 210/218 (96.33%), Postives = 213/218 (97.71%), Query Frame = 3
Query: 30 LVDEGMNNRVVKACIAAGCSVVGPVLAFSASGFGVKALDSSDGVSSSTQRPNPKLSPWMGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
L D GMNNRVVKACIAAGCSV GPVLAFSASGFGVKALDSSD VSSSTQRPNPKL+PWMGQSFNAQAVSSM+RVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGL RCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGG+ADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN
Sbjct: 16 LADRGMNNRVVKACIAAGCSVAGPVLAFSASGFGVKALDSSDCVSSSTQRPNPKLTPWMGQSFNAQAVSSMSRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 233
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: A0A6H5K9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X3_9PHAE) HSP 1 Score: 317 bits (811), Expect = 5.130e-107 Identity = 154/160 (96.25%), Postives = 157/160 (98.12%), Query Frame = 3
Query: 204 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
MGQSFNAQAVSSMTRVVRHPALAVPHLSLA+IGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGL RCMEVFEGSVCIMSNSAGTRDDPDY AIRIETALGIPVLRHDEKKPGG+ADVLAFF+GKDPEGGTVRLDELCFVGDRLLTDVVFGN
Sbjct: 1 MGQSFNAQAVSSMTRVVRHPALAVPHLSLANIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYVHAIRIETALGIPVLRHDEKKPGGIADVLAFFKGKDPEGGTVRLDELCFVGDRLLTDVVFGN 160
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: A0A835Z207_9STRA (Mitochondrial PGP phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z207_9STRA) HSP 1 Score: 218 bits (556), Expect = 8.220e-68 Identity = 103/162 (63.58%), Postives = 127/162 (78.40%), Query Frame = 3
Query: 198 PWMGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
PWMGQSFN++AV ++ V+RHP+LAVPHL+L +I +LDF LKAMG +G+IFDKDNTLTAPY + +HP + +G RC F GSVCIMSNSAGT DD ++ AI+IET LGIPVLRH EKKPGGL +VLAFF + + G + +LC +GDRLLTDVVFGN
Sbjct: 3 PWMGQSFNSKAVRTLGSVIRHPSLAVPHLALTNIAQLDFAALKAMGIRGIIFDKDNTLTAPYVEELHPAISDGFRRCQSHFGGSVCIMSNSAGTGDDVNFESAIKIETGLGIPVLRHREKKPGGLPEVLAFFRERCADEG-IEARDLCVIGDRLLTDVVFGN 163
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: A0A7S1ISK9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISK9_9EUGL) HSP 1 Score: 203 bits (517), Expect = 2.900e-62 Identity = 100/167 (59.88%), Postives = 121/167 (72.46%), Query Frame = 3
Query: 186 PKLSPW-MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
P +S W GQS+NA A+ ++ RV P+LA+PH+++ HIG LDF L+ GCKG++FDKDNTLTAPY + VHPLV EGL RC+ F+G VCI+SNSAGT DD Y A +IE LG+PV+RH EKKP GL DVL FF + G VR EL VGDRLLTDVVFGN
Sbjct: 28 PTMSSWHAGQSWNANAMGALGRVAAQPSLAIPHVTVTHIGCLDFHALREAGCKGIVFDKDNTLTAPYVEEVHPLVREGLDRCLREFQGRVCILSNSAGTDDDEGYEAARKIEAGLGLPVIRHKEKKPAGLQDVLDFFHHQS--GEAVRPTELVMVGDRLLTDVVFGN 192
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: A0A8J9RZH6_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9RZH6_PHATR) HSP 1 Score: 172 bits (436), Expect = 9.270e-51 Identity = 88/161 (54.66%), Postives = 111/161 (68.94%), Query Frame = 3
Query: 204 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVF-EGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
M QS N +A+ +M V+R P L VP LS+A + +++F LK G V+FDKDNTLT+PYE+ +HPL +G+ + VF V I+SNSAGT+DD DY DAIRIE LGI V+RH+EKKPGGL +VLA F+ DP LC VGDRLLTD+VFGN
Sbjct: 1 MVQSINTKALLTMASVLRRPGLMVPQLSVATVSQMNFTALKDHGIAAVMFDKDNTLTSPYENEIHPLAAQGIDEALRVFGRDRVAILSNSAGTKDDVDYTDAIRIENVLGIQVIRHEEKKPGGLDEVLAHFDLTDPA-------TLCMVGDRLLTDIVFGN 154
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: A0A448ZEQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ0_9STRA) HSP 1 Score: 172 bits (437), Expect = 2.550e-50 Identity = 90/162 (55.56%), Postives = 114/162 (70.37%), Query Frame = 3
Query: 204 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLK-AMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVFEG-SVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
M QS NA+A++++ V+RHP L VPH+S+A++ L++ +K G + ++FDKDNTLTAPY+ TVH +GL R E+F +V IMSNSAGT+DDP Y DA IE ALGI V+RHDEKKPGGL +VL F+ DP LC VGDRLLTDVVFGN
Sbjct: 1 MVQSLNAKALATLAYVLRHPTLIVPHVSVANVSELNYRAMKECAGIRAILFDKDNTLTAPYDMTVHRDAAKGLKRAKEIFGAENVAIMSNSAGTKDDPGYEDAKMIEEALGIAVIRHDEKKPGGLDEVLKHFDVDDPA-------TLCMVGDRLLTDVVFGN 155
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: A0A7S2TGD2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TGD2_9EUKA) HSP 1 Score: 173 bits (438), Expect = 8.420e-50 Identity = 82/161 (50.93%), Postives = 113/161 (70.19%), Query Frame = 3
Query: 204 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVFEG-SVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
+GQS N A+ ++ +V+R P+L +PH+S+ H+G LDF+ L+A G + V+FDKDNTLTAPY HPL + G +C+EVF +V IMSNSAGT DD ++ +A +E ALG+PVLRH KKPGG A++ A + GG + D++C VGDRL TDV+FG
Sbjct: 79 LGQSLNLDAIGALAQVIRRPSLLLPHISVPHVGHLDFDALRASGIRAVVFDKDNTLTAPYSLEPHPLTKPGFEKCVEVFGAENVMIMSNSAGTDDDEEHREARVVEEALGVPVLRHRAKKPGGYAELAAHY------GGALTPDQMCIVGDRLFTDVLFGT 233
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: A0A6V3JXN8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3JXN8_9EUKA) HSP 1 Score: 169 bits (428), Expect = 1.300e-48 Identity = 81/161 (50.31%), Postives = 108/161 (67.08%), Query Frame = 3
Query: 204 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVFEG-SVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
+GQS N A+ S+ RV+R P+L VPH+S+ H+G +DF LKA G + V+FDKDNTLTAPY HPL + +C+E F +V IMSNSAGT DD +Y +A +E ALG+PVLRH KKPGG ++ A + G + D++C +GDRL TDV+FG
Sbjct: 54 LGQSLNMDAIGSLARVLRKPSLLVPHVSVPHVGHMDFAALKASGIRAVVFDKDNTLTAPYSLEPHPLTKPAFAKCVEEFGAENVIIMSNSAGTNDDAEYREAKIVEDALGVPVLRHSAKKPGGFDELTAHYNG------ALTPDQICIIGDRLFTDVLFGT 208
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: A0A1Z5JVZ9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVZ9_FISSO) HSP 1 Score: 165 bits (418), Expect = 1.650e-47 Identity = 88/163 (53.99%), Postives = 114/163 (69.94%), Query Frame = 3
Query: 204 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLK-AMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVF-EGSVCIMSNSAGT-RDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
M QS N++A+ ++ V R PAL VPHLS+ + +++++ LK G + VIFDKDNTLTAPY VHP +GL R ++VF + V I+SNSAGT +DDPD+ DA++IE ALGI V+RH EKKPGGL +VL F DP +LC VGDRLLTD+VFGN
Sbjct: 1 MVQSVNSKAILTLASVARRPALLVPHLSVPTVSQINYDALKRCAGIEAVIFDKDNTLTAPYGSCVHPDASDGLQRVLDVFGKERVAILSNSAGTVQDDPDFRDALQIEEALGISVIRHKEKKPGGLEEVLQHFAMTDPA-------KLCMVGDRLLTDIVFGN 156
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Match: A0A7S2PRD8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRD8_9STRA) HSP 1 Score: 165 bits (417), Expect = 5.060e-47 Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = 3
Query: 204 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLK-AMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLMRCMEVFEGS-VCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGLADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGN 683
M QS N +A+ ++ V+R P LA PHL++ + +++ L+ G + VIFDKDNTL+APYE VHP ++GL MEVF S V ++SNSAGT+DDP Y DA +IE A+GI V+RHDEKKPGGL +V+ F+ D +LC VGDRLLTD+VFGN
Sbjct: 18 MVQSLNTKAIVTLASVMRRPYLASPHLAVGTVSEVNYTALRDEAGIRAVIFDKDNTLSAPYETVVHPKADQGLKNAMEVFGPSNVAVLSNSAGTKDDPGYEDAKKIEEAMGIAVIRHDEKKPGGLKEVMDHFDDVDDAS------QLCMVGDRLLTDIVFGN 173 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15533.4119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15533.4119.1 >prot_Ecto-sp13_S_contig15533.4119.1 ID=prot_Ecto-sp13_S_contig15533.4119.1|Name=mRNA_Ecto-sp13_S_contig15533.4119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp MNNRVVKACIAAGCSVVGPVLAFSASGFGVKALDSSDGVSSSTQRPNPKLback to top mRNA from alignment at Ecto-sp13_S_contig15533:689..4134+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15533.4119.1 ID=mRNA_Ecto-sp13_S_contig15533.4119.1|Name=mRNA_Ecto-sp13_S_contig15533.4119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15533:689..4134+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15533:689..4134+ >mRNA_Ecto-sp13_S_contig15533.4119.1 ID=mRNA_Ecto-sp13_S_contig15533.4119.1|Name=mRNA_Ecto-sp13_S_contig15533.4119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15533:689..4134+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |