mRNA_Ecto-sp13_S_contig15533.4118.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15533.4118.1
Unique NamemRNA_Ecto-sp13_S_contig15533.4118.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: D8LC81_ECTSI (MMtag domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC81_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 8.010e-29
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    4 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRG+
Sbjct:    1 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGK 48
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BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: A0A6H5JW83_9PHAE (MMtag domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW83_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.080e-26
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    4 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRG+
Sbjct:    1 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGK 48
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BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: G4YNR6_PHYSP (MMtag domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YNR6_PHYSP)

HSP 1 Score: 86.3 bits (212), Expect = 2.930e-20
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 TMGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            + G   YRVGGTRGG DQFKWEDVK D +RENYLGHS+ APVGRWQ+G+
Sbjct:    2 SFGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGK 50
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BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: T0QSS1_SAPDV (MMtag domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QSS1_SAPDV)

HSP 1 Score: 86.3 bits (212), Expect = 3.010e-20
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 TMGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            + G   YRVGGTRGGQDQFKW+DVK D +RENYLGHSL APVGRW +G+
Sbjct:    2 SFGKTNYRVGGTRGGQDQFKWDDVKNDKYRENYLGHSLQAPVGRWAKGK 50
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BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: A0A7S2HQR7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HQR7_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 4.920e-20
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 TMGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            +MG   YRVGGTRGG DQFKW+DVK D +R+NYLGHSL APVGRWQRG+
Sbjct:    8 SMGKDSYRVGGTRGGADQFKWDDVKDDKYRDNYLGHSLHAPVGRWQRGK 56
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BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: A0A3R7J9M4_9STRA (MMtag domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9M4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.280e-19
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 TMGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            + G   YRVGGTRGG DQFKWEDVK D +RENYLGHS+ APVGRWQ+G+
Sbjct:    2 SFGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGK 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: A0A067D0L3_SAPPC (MMtag domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D0L3_SAPPC)

HSP 1 Score: 86.3 bits (212), Expect = 1.680e-19
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 TMGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            + G   YRVGGTRGGQDQFKW+DVK D +RENYLGHSL APVGRW +G+
Sbjct:    2 SFGKTNYRVGGTRGGQDQFKWDDVKNDKYRENYLGHSLQAPVGRWAKGK 50
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BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: A0A2P4XPU4_9STRA (T-complex protein 1 subunit zeta n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPU4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.800e-19
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 TMGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            + G   YR+GGTRGG DQFKWEDVK D +RENYLGHS+ APVGRWQ+G+
Sbjct:    2 SFGKTNYRIGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGK 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: A0A6A3FVT6_9STRA (MMtag domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FVT6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.120e-19
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    4 MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            +G   YRVGGTRGG DQFKWEDVK D +RENYLGHS+ APVGRWQ+G+
Sbjct:    3 LGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGK 50
[Close]
BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Match: H3HC65_PHYRM (MMtag domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HC65_PHYRM)

HSP 1 Score: 86.3 bits (212), Expect = 3.560e-19
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 TMGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGE 147
            + G   YRVGGTRGG DQFKWEDVK D +RENYLGHS+ APVGRWQ+G+
Sbjct:    2 SFGKTNYRVGGTRGGADQFKWEDVKNDKYRENYLGHSVQAPVGRWQKGK 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15533.4118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC81_ECTSI8.010e-2997.92MMtag domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JW83_9PHAE2.080e-2697.92MMtag domain-containing protein n=1 Tax=Ectocarpus... [more]
G4YNR6_PHYSP2.930e-2073.47MMtag domain-containing protein n=1 Tax=Phytophtho... [more]
T0QSS1_SAPDV3.010e-2073.47MMtag domain-containing protein n=1 Tax=Saprolegni... [more]
A0A7S2HQR7_9EUKA4.920e-2075.51Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A3R7J9M4_9STRA1.280e-1973.47MMtag domain-containing protein n=3 Tax=Phytophtho... [more]
A0A067D0L3_SAPPC1.680e-1973.47MMtag domain-containing protein n=1 Tax=Saprolegni... [more]
A0A2P4XPU4_9STRA1.800e-1971.43T-complex protein 1 subunit zeta n=1 Tax=Phytophth... [more]
A0A6A3FVT6_9STRA3.120e-1975.00MMtag domain-containing protein n=6 Tax=Phytophtho... [more]
H3HC65_PHYRM3.560e-1973.47MMtag domain-containing protein n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15533contigEcto-sp13_S_contig15533:196..348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score109.4
Seed ortholog evalue5e-22
Seed eggNOG ortholog2880.D8LC81
Preferred nameC1orf35
Model size153
KEGG koko:K09498,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503,GO:0101002,GO:1904813
Exons1
EggNOG free text desc.Kinase phosphorylation protein
EggNOG OGsKOG4520@1,KOG4520@2759
Ec32 ortholog descriptionKinase phosphorylation domain
Ec32 orthologEc-20_004770.1
EC3.6.4.12
Cds size150
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko03400,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.8429208-CDS-Ecto-sp13_S_contig15533:195..3451681462823.8429208-CDS-Ecto-sp13_S_contig15533:195..345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15533 196..345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.856239-UTR-Ecto-sp13_S_contig15533:345..3481681462823.856239-UTR-Ecto-sp13_S_contig15533:345..348Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15533 346..348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15533.4118.1prot_Ecto-sp13_S_contig15533.4118.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15533 196..345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15533.4118.1

>prot_Ecto-sp13_S_contig15533.4118.1 ID=prot_Ecto-sp13_S_contig15533.4118.1|Name=mRNA_Ecto-sp13_S_contig15533.4118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MGDKRYRVGGTRGGQDQFKWEDVKGDVHRENYLGHSLLAPVGRWQRGES*
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mRNA from alignment at Ecto-sp13_S_contig15533:196..348-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15533.4118.1 ID=mRNA_Ecto-sp13_S_contig15533.4118.1|Name=mRNA_Ecto-sp13_S_contig15533.4118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15533:196..348- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAATGGGCGATAAGCGGTATCGCGTTGGTGGTACTCGTGGTGGGCAGGA
TCAGTTCAAGTGGGAAGATGTGAAGGGAGATGTCCACCGTGAGAACTACC
TCGGGCACAGCCTTCTGGCCCCTGTCGGTCGATGGCAGAGAGGTGAGAGT
TAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15533:196..348-

>mRNA_Ecto-sp13_S_contig15533.4118.1 ID=mRNA_Ecto-sp13_S_contig15533.4118.1|Name=mRNA_Ecto-sp13_S_contig15533.4118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15533:196..348- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGATAAGCGGTATCGCGTTGGTGGTACTCGTGGTGGGCAGGATCA
GTTCAAGTGGGAAGATGTGAAGGGAGATGTCCACCGTGAGAACTACCTCG
GGCACAGCCTTCTGGCCCCTGTCGGTCGATGGCAGAGAGGTGAGAGTTAA
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