mRNA_Ecto-sp13_S_contig15532.4117.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15532.4117.1
Unique NamemRNA_Ecto-sp13_S_contig15532.4117.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig15532.4117.1 vs. uniprot
Match: A0A6H5JT89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT89_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.360e-60
Identity = 243/326 (74.54%), Postives = 245/326 (75.15%), Query Frame = 1 
Query:    1 DDSGGGKGVLSRKEAGGWRHHERPQHTHYRSELHQHYQYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---PWXXXXXXRGGGAHRLEDYSSRVVMGPVASPPRVVSSHVDGPMAIVEVAGGGDATGRGGYGPSAAAEE------PYGFYVGGKNKGRDWAT-PAAAAAVQDHAEGAEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARATPVRSQGRESPKAALMARVAEESRSSAEVEEGRPPEAGRXXXXXXXXXXXXXXXVSANGRRPREG 948
            DDSG GKGVLSRKEAGGWRHHERP HTHYRSELHQHYQY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   PW      RGGG HRLEDYS +VVMGPVASPPRVVSSHV GPMAIVEVAGGGDATGRGGY PSA          PYGFYVGGKNKGR WAT                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARATPVRSQGRESPKAALMARVAEE RSSAEVE GRPP+AGR                SANGRRP EG
Sbjct: 1494 DDSGEGKGVLSRKEAGGWRHHERPPHTHYRSELHQHYQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPAHAAPSSSARRAPSTHPWMIPVGGRGGGTHRLEDYSGQVVMGPVASPPRVVSSHVHGPMAIVEVAGGGDATGRGGYRPSAXXXXXXXXXXPYGFYVGGKNKGRGWATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARATPVRSQGRESPKAALMARVAEECRSSAEVEMGRPPKAGREDGGSDDGGRSGDDTESANGRRPPEG 1819
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BLAST of mRNA_Ecto-sp13_S_contig15532.4117.1 vs. uniprot
Match: D7G3G2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G2_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.570e-51
Identity = 207/324 (63.89%), Postives = 210/324 (64.81%), Query Frame = 1 
Query:    1 DDSGGGKGVLSRKEAGGWRHHERPQHTHYRSELHQHYQYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWXXXXXXRGGGAHRLEDYSSRVVMGPVASPPRVVSSHVDGPMAIVEVAGGGDATGRGGYGPSAAAEEPYGFYVGGKNKGRDWATPAAAAAVQDHAEGAEATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------ARATPVRSQGRESPKAALMARVAEESRSSAEVEEGRPPEAGRXXXXXXXXXXXXXXXVSANGRRPREG 948
            D+SGGGKGVLSRKEAGGWRHHERPQHTHYRSELHQHYQY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     PW      RGGG HRLEDYS+RVVMGPVASPPRVVSSHVDGPMAIVEVAGGGDATGRGGYGPS                                        XXXXXXXXXXX                           XXXXXXXXXXXXXX        ARATPVRSQGRESPK ALMARVA+ESRSSAE EEGRPPEAG   XXXXXXXXX     SANGRRPREG
Sbjct: 1573 DESGGGKGVLSRKEAGGWRHHERPQHTHYRSELHQHYQYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAHVAPSSARRAPSTH----PWMMSGGGRGGGVHRLEDYSNRVVMGPVASPPRVVSSHVDGPMAIVEVAGGGDATGRGGYGPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSAERQGSPPRHQQQGHGSSVAPARAXXXXXXXXXXXXXXSLPSGGGGARATPVRSQGRESPKTALMARVAQESRSSAEAEEGRPPEAGPEGXXXXXXXXXGDDTESANGRRPREG 1892
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15532.4117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT89_9PHAE1.360e-6074.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3G2_ECTSI1.570e-5163.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15532contigEcto-sp13_S_contig15532:2257..3306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1050
Hectar predicted targeting categoryother localisation
Exons1
Cds size1050
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462823.8133662-CDS-Ecto-sp13_S_contig15532:2256..33061681462823.8133662-CDS-Ecto-sp13_S_contig15532:2256..3306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15532 2257..3306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15532.4117.1prot_Ecto-sp13_S_contig15532.4117.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15532 2257..3306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15532.4117.1

>prot_Ecto-sp13_S_contig15532.4117.1 ID=prot_Ecto-sp13_S_contig15532.4117.1|Name=mRNA_Ecto-sp13_S_contig15532.4117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
DDSGGGKGVLSRKEAGGWRHHERPQHTHYRSELHQHYQYQQQQQQQQQQQ
QQRQSGGGGGMPMAHHARMLPVPPPPGSHAAPSSSSRRAPSTHPWMMPGG
GRGGGAHRLEDYSSRVVMGPVASPPRVVSSHVDGPMAIVEVAGGGDATGR
GGYGPSAAAEEPYGFYVGGKNKGRDWATPAAAAAVQDHAEGAEATAAAAA
RRSAERRGSPPRHQQQGHGSIVSSARAKTAAAANSSPTPSSPPSGGGGAR
ATPVRSQGRESPKAALMARVAEESRSSAEVEEGRPPEAGREGGGSDDGGR
SGDNTVSANGRRPREGAAEEDEEKLRANGDGGAGQQQEYRKQQQNIKLQR
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mRNA from alignment at Ecto-sp13_S_contig15532:2257..3306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15532.4117.1 ID=mRNA_Ecto-sp13_S_contig15532.4117.1|Name=mRNA_Ecto-sp13_S_contig15532.4117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15532:2257..3306+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGACTCGGGTGGGGGTAAAGGGGTCCTGTCGAGGAAAGAAGCGGGGGG
GTGGCGGCACCACGAGCGCCCGCAGCACACACACTATCGCTCGGAGCTCC
ATCAGCACTACCAGTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACAACGCCAAAGCGGCGGGGGCGGGGGCATGCCCATGGCCCACCACGC
TCGCATGCTCCCGGTTCCCCCGCCGCCGGGGTCTCACGCGGCGCCCTCCT
CCTCCTCACGGAGGGCGCCGTCGACCCATCCCTGGATGATGCCCGGCGGG
GGACGGGGCGGGGGTGCCCACAGACTCGAGGACTACAGCAGTCGGGTGGT
GATGGGACCGGTCGCGTCGCCGCCGCGGGTGGTGTCCTCTCACGTCGATG
GGCCGATGGCGATCGTGGAGGTTGCCGGTGGTGGCGACGCAACAGGGCGG
GGGGGTTACGGCCCGTCGGCGGCGGCAGAGGAACCGTACGGCTTTTACGT
CGGAGGGAAGAACAAGGGGAGGGACTGGGCTACCCCGGCGGCGGCGGCGG
CCGTGCAGGACCACGCCGAGGGAGCGGAAGCAACCGCCGCCGCCGCCGCG
CGTCGTAGCGCGGAGAGGCGAGGGTCACCGCCTCGACACCAGCAGCAAGG
GCATGGCAGCATCGTGTCATCGGCAAGGGCAAAGACAGCAGCAGCTGCCA
ATTCTTCTCCAACACCATCTTCGCCGCCCTCCGGCGGGGGTGGAGCCCGC
GCTACCCCTGTGAGGTCTCAGGGACGCGAGTCGCCGAAGGCGGCGTTGAT
GGCCCGCGTGGCGGAGGAGTCCCGCTCGAGTGCTGAGGTGGAGGAGGGGC
GACCCCCGGAGGCAGGCCGGGAGGGCGGCGGCAGCGATGACGGTGGTCGA
AGCGGGGACAATACCGTGAGCGCTAACGGTCGGCGACCGCGCGAGGGGGC
CGCCGAGGAGGACGAGGAGAAGCTGCGCGCTAACGGCGACGGCGGCGCGG
GTCAGCAACAGGAGTACCGAAAGCAACAGCAAAATATCAAGCTGCAGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15532:2257..3306+

>mRNA_Ecto-sp13_S_contig15532.4117.1 ID=mRNA_Ecto-sp13_S_contig15532.4117.1|Name=mRNA_Ecto-sp13_S_contig15532.4117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15532:2257..3306+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGACTCGGGTGGGGGTAAAGGGGTCCTGTCGAGGAAAGAAGCGGGGGG
GTGGCGGCACCACGAGCGCCCGCAGCACACACACTATCGCTCGGAGCTCC
ATCAGCACTACCAGTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACAACGCCAAAGCGGCGGGGGCGGGGGCATGCCCATGGCCCACCACGC
TCGCATGCTCCCGGTTCCCCCGCCGCCGGGGTCTCACGCGGCGCCCTCCT
CCTCCTCACGGAGGGCGCCGTCGACCCATCCCTGGATGATGCCCGGCGGG
GGACGGGGCGGGGGTGCCCACAGACTCGAGGACTACAGCAGTCGGGTGGT
GATGGGACCGGTCGCGTCGCCGCCGCGGGTGGTGTCCTCTCACGTCGATG
GGCCGATGGCGATCGTGGAGGTTGCCGGTGGTGGCGACGCAACAGGGCGG
GGGGGTTACGGCCCGTCGGCGGCGGCAGAGGAACCGTACGGCTTTTACGT
CGGAGGGAAGAACAAGGGGAGGGACTGGGCTACCCCGGCGGCGGCGGCGG
CCGTGCAGGACCACGCCGAGGGAGCGGAAGCAACCGCCGCCGCCGCCGCG
CGTCGTAGCGCGGAGAGGCGAGGGTCACCGCCTCGACACCAGCAGCAAGG
GCATGGCAGCATCGTGTCATCGGCAAGGGCAAAGACAGCAGCAGCTGCCA
ATTCTTCTCCAACACCATCTTCGCCGCCCTCCGGCGGGGGTGGAGCCCGC
GCTACCCCTGTGAGGTCTCAGGGACGCGAGTCGCCGAAGGCGGCGTTGAT
GGCCCGCGTGGCGGAGGAGTCCCGCTCGAGTGCTGAGGTGGAGGAGGGGC
GACCCCCGGAGGCAGGCCGGGAGGGCGGCGGCAGCGATGACGGTGGTCGA
AGCGGGGACAATACCGTGAGCGCTAACGGTCGGCGACCGCGCGAGGGGGC
CGCCGAGGAGGACGAGGAGAAGCTGCGCGCTAACGGCGACGGCGGCGCGG
GTCAGCAACAGGAGTACCGAAAGCAACAGCAAAATATCAAGCTGCAGAGA
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